FFCP PHASE1:Hg19::chr12:52880994..52881011,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52880994..52881011,-
|short_description=p@chr12:52880994..52881011,-
|description=CAGE_peak_at_chr12:52880994..52881011,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:52880994..52881011,- | |||
|coexpression_cluster_id=C405 | |||
|description=CAGE_peak_at_chr12:52880994..52881011,- | |||
|id=chr12:52880994..52881011,- | |||
|ontology_enrichment_celltype=CL:0002076!8.24e-16!43;CL:0000244!4.38e-15!4;CL:0000731!4.38e-15!4;CL:0002159!7.00e-13!13;CL:0002621!8.16e-13!3;CL:0000066!9.89e-13!254;CL:0000223!1.42e-10!59;CL:0000240!4.05e-10!6;CL:0000311!4.05e-10!6;CL:0000079!4.05e-10!6;CL:0000237!4.05e-10!6;CL:0000036!4.05e-10!6;CL:0000357!4.05e-10!6;CL:0000114!4.05e-10!6;CL:0002251!4.68e-10!21;CL:0002368!9.18e-10!13;CL:0002327!8.15e-09!4;CL:0000575!1.61e-08!2;CL:0000312!2.93e-07!5;CL:0000076!6.33e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002621;1.33e-21;3!CL:0000575;4.93e-14;2!CL:0000349;4.43e-12;19!CL:0002076;1.34e-11;42!CL:0000240;1.14e-10;6!CL:0000311;1.14e-10;6!CL:0000079;1.14e-10;6!CL:0000237;1.14e-10;6!CL:0002577;1.17e-09;3!CL:0002252;1.77e-08;1!CL:0002251;1.81e-08;20!CL:0002368;2.00e-08;13!CL:0002336;7.33e-08;1!CL:0002261;7.33e-08;1!CL:0002170;7.33e-08;1!CL:0002159;8.23e-08;14!CL:0000244;1.05e-07;4!CL:0000731;1.05e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,9.79e-22,3;CL:0000575,4.94e-14,2;CL:0000349,4.53e-12,19;CL:0002076,1.06e-11,42;CL:0000240,1.53e-10,6;CL:0000311,1.53e-10,6;CL:0000079,1.53e-10,6;CL:0000237,1.53e-10,6;CL:0000036,1.53e-10,6;CL:0000357,1.53e-10,6;CL:0000114,1.53e-10,6;CL:0002577,1.12e-09,3;CL:0002252,1.77e-08,1;CL:0002251,1.84e-08,20;CL:0002368,1.85e-08,13;CL:0000223,4.43e-08,58;CL:0002159,8.78e-08,14;CL:0000244,9.64e-08,4;CL:0000731,9.64e-08,4;CL:0002336,1.06e-07,1;CL:0002261,1.06e-07,1;CL:0002170,1.06e-07,1;CL:0000066,1.33e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000357;1.14e-10;6!CL:0000114;1.14e-10;6!UBERON:0009143;7.33e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!2.76e-11!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.85e-16!14;UBERON:0000158!7.85e-16!14;UBERON:0003124!7.57e-13!7;UBERON:0001949!8.16e-13!3;UBERON:0000365!4.40e-12!5;UBERON:0004119!6.25e-11!169;UBERON:0000925!6.25e-11!169;UBERON:0006595!6.25e-11!169;UBERON:0001004!1.47e-10!72;UBERON:0005910!4.46e-10!6;UBERON:0000166!5.11e-10!21;UBERON:0000165!4.42e-09!28;UBERON:0000930!4.42e-09!28;UBERON:0001911!8.15e-09!4;UBERON:0005333!8.15e-09!4;UBERON:0008425!8.15e-09!4;UBERON:0005311!8.15e-09!4;UBERON:0001987!9.32e-09!4;UBERON:0004340!9.32e-09!4;UBERON:0000478!1.15e-08!24;UBERON:0005795!3.59e-07!22;UBERON:0001444!4.49e-07!48;UBERON:0000161!6.44e-07!35;UBERON:0003100!6.91e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.33e-21;3!UBERON:0000486;3.12e-14;12!UBERON:0005631;6.47e-11;10!UBERON:0000158;6.47e-11;10!UBERON:0001043;4.68e-10;3!UBERON:0003929;1.48e-09;7!UBERON:0000478;1.86e-09;24!UBERON:0000305;3.02e-09;7!UBERON:0003729;1.22e-08;13!UBERON:0003350;2.04e-08;8!UBERON:0001828;2.04e-08;8!UBERON:0001987;1.87e-07;4!UBERON:0000964;1.87e-07;4!UBERON:0010409;1.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,9.79e-22,3;UBERON:0005631,1.48e-16,14;UBERON:0000158,1.48e-16,14;UBERON:0001043,3.49e-10,3;UBERON:0009143,3.49e-10,3;UBERON:0000478,1.90e-09,24;UBERON:0000305,2.67e-09,7;UBERON:0003124,6.90e-09,7;UBERON:0003729,1.24e-08,13;UBERON:0003350,1.83e-08,8;UBERON:0001828,1.83e-08,8;UBERON:0004923,1.86e-08,66;UBERON:0004871,3.40e-08,8;UBERON:0004119,1.56e-07,160;UBERON:0000925,1.56e-07,160;UBERON:0006595,1.56e-07,160;UBERON:0001987,1.81e-07,4;UBERON:0004340,1.81e-07,4;UBERON:0000964,1.87e-07,4;UBERON:0010409,1.87e-07,4;UBERON:0004348,1.87e-07,4;UBERON:0005427,1.87e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.40285509343189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10531672999548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60456474173561,4.63668405004419,2.86804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.9735987513844,1.1240175325762,0.201057944823262,1.11106134190236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,1.97028749946266,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,0.384380134730212,1.53135254993501,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11688647996127,0,0,0,4.3050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,2.00070672109872,0,0,0,0,0.957003479195758,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,1.93978032976839,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,4.57205170583619,0,0.740872583160463,1.00411087549747,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.40285509343189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10531672999548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60456474173561,4.63668405004419,2.86804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.9735987513844,1.1240175325762,0.201057944823262,1.11106134190236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,1.97028749946266,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,0.384380134730212,1.53135254993501,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11688647996127,0,0,0,4.3050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,2.00070672109872,0,0,0,0,0.957003479195758,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,1.93978032976839,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,4.57205170583619,0,0.740872583160463,1.00411087549747,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr12:52880994..52881011,- | |||
}} | }} |
Latest revision as of 09:32, 24 July 2015
Short description: | p@chr12:52880994..52881011, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52880994..52881011, - |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 9.79e-22 | 3 |
corneal epithelial cell | 4.94e-14 | 2 |
extraembryonic cell | 4.53e-12 | 19 |
endo-epithelial cell | 1.06e-11 | 42 |
stratified squamous epithelial cell | 1.53e-10 | 6 |
keratin accumulating cell | 1.53e-10 | 6 |
stratified epithelial cell | 1.53e-10 | 6 |
keratinizing barrier epithelial cell | 1.53e-10 | 6 |
epithelial fate stem cell | 1.53e-10 | 6 |
stratified epithelial stem cell | 1.53e-10 | 6 |
surface ectodermal cell | 1.53e-10 | 6 |
placental epithelial cell | 1.12e-09 | 3 |
epithelial cell of esophagus | 1.77e-08 | 1 |
epithelial cell of alimentary canal | 1.84e-08 | 20 |
respiratory epithelial cell | 1.85e-08 | 13 |
endodermal cell | 4.43e-08 | 58 |
general ecto-epithelial cell | 8.78e-08 | 14 |
transitional epithelial cell | 9.64e-08 | 4 |
urothelial cell | 9.64e-08 | 4 |
buccal mucosa cell | 1.06e-07 | 1 |
endothelial cell of viscerocranial mucosa | 1.06e-07 | 1 |
keratinized cell of the oral mucosa | 1.06e-07 | 1 |
epithelial cell | 1.33e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 9.79e-22 | 3 |
extraembryonic membrane | 1.48e-16 | 14 |
membranous layer | 1.48e-16 | 14 |
esophagus | 3.49e-10 | 3 |
esophageal region | 3.49e-10 | 3 |
extraembryonic structure | 1.90e-09 | 24 |
amnion | 2.67e-09 | 7 |
chorion | 6.90e-09 | 7 |
mouth mucosa | 1.24e-08 | 13 |
epithelium of mucosa | 1.83e-08 | 8 |
gingiva | 1.83e-08 | 8 |
organ component layer | 1.86e-08 | 66 |
somatic layer of lateral plate mesoderm | 3.40e-08 | 8 |
endoderm-derived structure | 1.56e-07 | 160 |
endoderm | 1.56e-07 | 160 |
presumptive endoderm | 1.56e-07 | 160 |
placenta | 1.81e-07 | 4 |
allantois | 1.81e-07 | 4 |
cornea | 1.87e-07 | 4 |
eye surface | 1.87e-07 | 4 |
optic eminence | 1.87e-07 | 4 |
corneal primordium | 1.87e-07 | 4 |