FFCP PHASE1:Hg19::chr9:123165438..123165450,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=489bp_to_ENST00000484546_5end | |||
|description=CAGE_peak_9_at_CDK5RAP2_5end | |||
|id=chr9:123165438..123165450,- | |||
|ontology_enrichment_celltype=CL:0000048!2.34e-12!430;CL:0000723!3.57e-12!436;CL:0002320!5.28e-12!365;CL:0000055!1.46e-11!180;CL:0000057!2.19e-11!75;CL:0000034!2.95e-11!444;CL:0002371!8.19e-11!591;CL:0000144!8.13e-10!625;CL:0000548!9.77e-10!679;CL:0000004!9.77e-10!679;CL:0000255!9.77e-10!679;CL:0000012!1.87e-09!682;CL:0000134!3.92e-09!358;CL:0000219!1.58e-07!390;CL:0002540!2.01e-07!6;CL:0002057!8.47e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002564;2.93e-12;3!CL:0000594;1.01e-10;3!CL:0002540;2.22e-10;6!CL:0000188;1.68e-09;9!CL:0002602;1.01e-08;2!CL:0002575;3.19e-08;2!CL:0000680;4.11e-08;7!CL:0000860;1.66e-07;33!CL:0002057;1.66e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,3.12e-12,3;CL:0000594,1.38e-10,3;CL:0002540,2.23e-10,6;CL:0000188,1.82e-09,9;CL:0002320,8.78e-09,361;CL:0002602,9.24e-09,2;CL:0002575,5.67e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.09e-11!375;UBERON:0002204!1.86e-09!167;UBERON:0002200!3.45e-08!11;UBERON:0006876!3.45e-08!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;2.95e-19;5!UBERON:0002216;2.95e-19;5!UBERON:0011134;2.95e-19;5!UBERON:0002209;2.95e-19;5!UBERON:0002213;2.95e-19;5!UBERON:0007844;2.95e-19;5!UBERON:0011138;2.95e-19;5!UBERON:0001130;2.95e-19;5!UBERON:0001066;2.95e-19;5!UBERON:0001468;2.95e-19;5!UBERON:0004765;1.18e-12;26!UBERON:0002242;2.93e-12;3!UBERON:0004905;6.80e-12;8!UBERON:0000982;6.80e-12;8!UBERON:0004770;6.80e-12;8!UBERON:0006444;1.01e-08;2!UBERON:0001995;1.01e-08;2!UBERON:0004715;1.01e-08;2!UBERON:0002371;1.22e-07;12!UBERON:0001134;2.29e-07;16!UBERON:0002036;2.29e-07;16!UBERON:0002204;2.42e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.87e-19,5;UBERON:0002216,2.87e-19,5;UBERON:0011134,2.87e-19,5;UBERON:0002209,2.87e-19,5;UBERON:0002213,2.87e-19,5;UBERON:0005856,2.87e-19,5;UBERON:0005866,2.87e-19,5;UBERON:0005863,2.87e-19,5;UBERON:0007844,2.87e-19,5;UBERON:0011138,2.87e-19,5;UBERON:0001130,2.87e-19,5;UBERON:0001066,2.87e-19,5;UBERON:0001468,2.87e-19,5;UBERON:0002242,3.12e-12,3;UBERON:0003068,3.12e-12,3;UBERON:0002328,3.12e-12,3;UBERON:0004880,3.12e-12,3;UBERON:0004765,5.01e-12,90;UBERON:0004905,6.69e-12,8;UBERON:0000982,6.69e-12,8;UBERON:0004770,6.69e-12,8;UBERON:0002204,1.64e-10,167;UBERON:0001434,2.44e-10,100;UBERON:0002384,5.58e-09,371;UBERON:0006444,9.24e-09,2;UBERON:0001995,9.24e-09,2;UBERON:0004715,9.24e-09,2;UBERON:0002371,7.51e-08,76;UBERON:0001474,4.91e-07,82 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,3.15859936713415,0.261185628199839,0,0,0,0,5.19818682432196,3.64537113300707,0,1.20538905604795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436194716338694,0.377875943688809,0,1.16214518452842,1.23350366406548,0.929119112685311,1.43846196161075,1.5369642391746,0.47296445977717,0,0,0,0.941211697713023,1.09162460023138,0.224723484445085,0,0,0,1.9791078011203,0.797854630486527,0.426224750532694,0,2.26954089876456,0.622822248995575,1.7587406567972,1.0429658368404,0.65156653411535,1.21079900526674,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.383587685530591,0,3.50936537445123,1.30361867064741,1.5905718941022,0.486634870302636,0.0945348171640679,0.221729397462564,0.351339142772504,0,0,0,1.29818957461873,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0.311211035399766,0,0,1.05950199351452,0.576175924479999,0.234321431833797,0.624320153660641,0.570471821544449,0.597794722207204,0,0,0.140450806702248,1.22492502752936,0.368502951935304,0.723280468230358,0,0,0,1.43723628363248,0,0.125118519871964,0,0.438977620880838,0,0,0.113432183160021,0.179389635688862,1.2813443329114,4.02670612203168,0.300091096084402,0.824420233907511,0,0,0,0.487185025805993,0.252433774244115,1.47279837827679,0.161646056818812,0,0.604512589365842,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0.464367928031979,2.16563844500876,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,1.47008711385542,0,0,0,0.882926198829301,0.122988438543114,0.171567810298526,0,1.1240175325762,0,0,0.325808305310325,3.11980435583874,0,0,0.469634776943287,0,0,0,0,0,0,0.468008530278475,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,0.646358578788889,3.57656445851882,0,0,0,3.60090323966999,5.67396528093113,4.52917704327369,0.142977993658148,1.62786481617433,0,0.325736184293735,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.868687840005475,3.90405012845728,0.895304816199478,0,0.197030760201927,0,0,0.254094624222463,0,0,0,0,0,0,0,8.83378740377807,8.50289885801451,2.17012018959788,0.207970861530807,0.356857977594324,0,0.819989904948992,2.40756879782175,0,0,0,1.47495334833363,0.0868836144680828,4.30762546418029,1.02943027143257,0,0.215714200818617,0.213455115606889,0,0,0.30239029332968,0.496215615637554,0,0.841980283299221,0.128139149255701,0,0,1.48418066444991,0.771048469013278,0.355123450626254,0.492762936082855,0,0.581051892299796,0,0,0,0.459257792658427,0,0.262248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,0,0,2.7728751080636,2.30255512089194,0.413509717453592,1.07420244868274,1.59518363305651,1.19317278382541,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,0.37064843820784,0,0.372158369359667,0.949138274156178,0.190630193923825,0,0,0.318203247925937,0,0,0,0,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0.354761064070598,0.422215270595328,0,0.75894634753143,0.699869440489966,0,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,5.10892010102955,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0.137041924646751,0.596143835108969,0,0,0.160317640503067,0,0,0,0,0.171594997861965,0,0,0,0,0.104602846312333,0.917983958726896,0.866851769704557,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,1.71086837884329,0.704815022316672,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,1.19403842309499,0.467426619694449,0.554805861502613,0.378806010550178,2.0125432140206,0.889811221596536,0.457680136793847,0.604923695052956,0.932623203496683,0.295710299979268,0.318593534327405,0.449803112163605,0.621051827505038,0,0.797525143673985,0,0,0,0,1.09109195521536,0.107410557042488,0.464033759878494,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0.168942440653073,0.256241518587947,3.45430341731199,0.303859956177382,0,0,0,0,0,12.288645437686,0,0.19998739585493,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0.825788063434183,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685952037749674,0.0679697329768317,0.0657727735628491,0.472775363535873,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.397901550322736,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,1.84870251452567,0,0.126166424835079,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p9@CDK5RAP2 | |||
}} |
Revision as of 03:04, 23 January 2014
Short description: | p9@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CDK5RAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 489bp_to_ENST00000484546_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 3.12e-12 | 3 |
skeletal muscle satellite cell | 1.38e-10 | 3 |
mesenchymal stem cell of the bone marrow | 2.23e-10 | 6 |
cell of skeletal muscle | 1.82e-09 | 9 |
connective tissue cell | 8.78e-09 | 361 |
annulus pulposus cell | 9.24e-09 | 2 |
central nervous system pericyte | 5.67e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 2.87e-19 | 5 |
symphysis | 2.87e-19 | 5 |
nonsynovial joint | 2.87e-19 | 5 |
fibrous joint | 2.87e-19 | 5 |
cartilaginous joint | 2.87e-19 | 5 |
developing mesenchymal condensation | 2.87e-19 | 5 |
pre-cartilage condensation | 2.87e-19 | 5 |
cartilaginous condensation | 2.87e-19 | 5 |
cartilage element | 2.87e-19 | 5 |
post-cranial axial skeletal system | 2.87e-19 | 5 |
vertebral column | 2.87e-19 | 5 |
intervertebral disk | 2.87e-19 | 5 |
intervertebral joint | 2.87e-19 | 5 |
nucleus pulposus | 3.12e-12 | 3 |
axial mesoderm | 3.12e-12 | 3 |
notochord | 3.12e-12 | 3 |
chordamesoderm | 3.12e-12 | 3 |
skeletal element | 5.01e-12 | 90 |
articulation | 6.69e-12 | 8 |
skeletal joint | 6.69e-12 | 8 |
articular system | 6.69e-12 | 8 |
musculoskeletal system | 1.64e-10 | 167 |
skeletal system | 2.44e-10 | 100 |
connective tissue | 5.58e-09 | 371 |
annulus fibrosus | 9.24e-09 | 2 |
fibrocartilage | 9.24e-09 | 2 |
annulus fibrosus disci intervertebralis | 9.24e-09 | 2 |
bone marrow | 7.51e-08 | 76 |
bone element | 4.91e-07 | 82 |