FFCP PHASE1:Hg19::chr4:106473768..106473804,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54848 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25968 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NXL2,C9JIB4 | |||
|association_with_transcript=0bp_to_ENST00000265154,ENST00000420470,NM_001242729,NM_017700,uc003hxu.2_5end | |||
|coexpression_cluster_id=C2767 | |||
|description=CAGE_peak_1_at_ARHGEF38_5end | |||
|id=chr4:106473768..106473804,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.49e-09;29!UBERON:0006595;6.10e-09;86!UBERON:0001041;3.71e-07;30 | |||
|ontology_enrichment_disease=DOID:305!3.73e-15!106;DOID:299!4.16e-13!25;DOID:0050687!4.80e-10!143;DOID:0050615!3.64e-08!16;DOID:1324!8.59e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:299;1.49e-08;25!DOID:3493;4.09e-08;2!DOID:1325;1.18e-07;7!DOID:3904;1.18e-07;7!DOID:4468;8.01e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.40e-08,25;DOID:3493,4.02e-08,2;DOID:1325,1.30e-07,7;DOID:3904,1.30e-07,7;DOID:305,5.28e-07,106;DOID:4468,7.31e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.19e-20!169;UBERON:0000925!5.19e-20!169;UBERON:0006595!5.19e-20!169;UBERON:0001007!2.25e-19!155;UBERON:0001555!2.25e-19!155;UBERON:0007026!2.25e-19!155;UBERON:0004921!3.41e-19!129;UBERON:0004185!3.41e-19!129;UBERON:0000077!1.53e-14!130;UBERON:0005409!6.35e-13!35;UBERON:0000160!7.45e-12!27;UBERON:0005911!3.98e-10!82;UBERON:0000466!6.41e-10!126;UBERON:0001041!7.04e-10!98;UBERON:0007023!9.17e-10!115;UBERON:0000464!1.22e-09!104;UBERON:0005153!1.57e-09!37;UBERON:0002294!3.61e-09!7;UBERON:0001173!3.61e-09!7;UBERON:0004912!3.61e-09!7;UBERON:0001004!1.53e-08!72;UBERON:0002048!1.72e-08!22;UBERON:0000117!1.72e-08!22;UBERON:0000171!1.72e-08!22;UBERON:0000170!1.72e-08!22;UBERON:0005597!1.72e-08!22;UBERON:0000118!1.72e-08!22;UBERON:0000065!1.08e-07!53;UBERON:0005177!2.41e-07!107;UBERON:0005178!8.16e-07!34;UBERON:0002224!8.16e-07!34;UBERON:0009569!8.45e-07!113;UBERON:0002108!8.51e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.26e-20;22!UBERON:0004921;2.56e-18;33!UBERON:0000160;9.58e-16;17!UBERON:0002108;1.16e-10;4!UBERON:0001155;2.22e-08;9!UBERON:0002048;3.12e-08;22!UBERON:0000117;3.12e-08;22!UBERON:0000171;3.12e-08;22!UBERON:0000170;3.12e-08;22!UBERON:0000007;3.82e-08;2!UBERON:0001041;6.21e-08;14!UBERON:0001829;1.09e-07;2!UBERON:0000058;1.11e-07;10!UBERON:0003127;1.17e-07;2!UBERON:0002294;2.11e-07;7!UBERON:0001173;2.11e-07;7!UBERON:0000341;4.60e-07;2!UBERON:0000059;8.52e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,6.34e-18,25;UBERON:0004921,1.28e-16,118;UBERON:0000160,8.67e-16,17;UBERON:0001007,1.56e-15,145;UBERON:0001555,1.56e-15,145;UBERON:0007026,1.56e-15,145;UBERON:0004119,2.59e-13,160;UBERON:0000925,2.59e-13,160;UBERON:0006595,2.59e-13,160;UBERON:0007023,4.64e-13,114;UBERON:0002108,1.22e-10,4;UBERON:0005153,4.25e-10,37;UBERON:0001155,1.96e-08,9;UBERON:0002048,3.14e-08,22;UBERON:0000117,3.14e-08,22;UBERON:0000171,3.14e-08,22;UBERON:0000170,3.14e-08,22;UBERON:0005597,3.14e-08,22;UBERON:0000118,3.14e-08,22;UBERON:0005911,3.27e-08,82;UBERON:0000007,3.89e-08,2;UBERON:0001829,1.09e-07,2;UBERON:0001041,1.13e-07,87;UBERON:0003127,1.17e-07,2;UBERON:0005178,1.17e-07,34;UBERON:0002224,1.17e-07,34;UBERON:0000915,1.22e-07,52;UBERON:0005157,2.15e-07,47;UBERON:0005181,2.20e-07,35;UBERON:0011216,3.01e-07,223;UBERON:0000341,4.74e-07,2;UBERON:0000059,7.73e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53643503843824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.464775771478074,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,15.7425201335185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.16383192917273,0,0.0920809889358963,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61996756571508,0,0,0,0,0,0,0,0,0,0,0,0,2.19172787076177,3.59169090190492,5.79445320064835,0,0,0,0.179736702294654,5.54965641494388,0,0,0,0,0,0,0,4.16684417736373,36.7331999984022,4.34999745260876,0,9.91589236141789,1.18193840883968,0,0,0,0,0,0,0,0,0,0,0,1.61595542857974,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95397290339238,2.77495773870551,1.97894300007517,0,3.98104772431402,6.1035719507304,10.9985426088053,0,0,0,0,0,0,0,0.782658475728359,0,1.57833761139756,6.04953580243319,0,0,0.450970258243478,0.103688191397247,0,0,0,0,0.569219092059585,0,0,0,0,9.95942008979572,0,0,0,0,0,0,0.451961481561065,0,0,0,4.69323318563527,0.240476460754601,8.5381197895741,0,15.8499458869517,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275078873194468,0.415440338029185,0,0,0,0,6.46206799853425,3.46200281690987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0.704815022316672,9.93122936879561,41.0303236310128,14.4983669371518,0,0,0,0.638341257770182,0,0,0,0,40.0487945438097,0,0,0,0,0,0,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0,1.20336525358812,0,7.81514011233093,0.261906694481422,0,4.43568258651136,0,0,0,0,0,8.22386650285773,1.48863353516788,0,0.894336993477167,0,0,20.0298649398088,38.4749103383693,0.354809480650555,0,0,0,0,0,4.78295028135897,9.81163660631425,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,8.17431981758527,0,0,0,0,0,0,0.223710863595585,20.611549059201,22.189062346773,0,0,0,0,4.2109103423179,0.596852325484105,0,15.1347749932206,0,15.5491728873674,7.02284838782296,5.02686989159102,14.1095188908457,0,16.2616817500122,0,0,0,0,0,0,0,0.178553938605658,0,1.7653100671617,2.19100916473955,11.009502801709,0,0,0,0,16.3998320559774,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0,0,0,3.19850972851471,4.76128862927481,0,0.248298857183432,0,4.83718402914053,0.404234377916439,0.870866991587845,0,0.942928742204225,12.7665525598964,7.65118820055831,0,0,0,0.0898252021065869,0,1.1001729976458,0.813792356631477,0.665756774185513,0,0 | |||
|short_description=p1@ARHGEF38 | |||
}} |
Revision as of 02:37, 22 January 2014
Short description: | p1@ARHGEF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARHGEF38_5end |
Coexpression cluster: | C2767_lung_breast_maxillary_pituitary_signet_temporal_gastric |
Association with transcript: | 0bp_to_ENST00000265154, ENST00000420470, NM_001242729, NM_017700, uc003hxu.2_5end |
EntrezGene: | ARHGEF38 |
HGNC: | 25968 |
UniProt: | Q9NXL2C9JIB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 6.34e-18 | 25 |
subdivision of digestive tract | 1.28e-16 | 118 |
intestine | 8.67e-16 | 17 |
digestive system | 1.56e-15 | 145 |
digestive tract | 1.56e-15 | 145 |
primitive gut | 1.56e-15 | 145 |
endoderm-derived structure | 2.59e-13 | 160 |
endoderm | 2.59e-13 | 160 |
presumptive endoderm | 2.59e-13 | 160 |
adult organism | 4.64e-13 | 114 |
small intestine | 1.22e-10 | 4 |
epithelial bud | 4.25e-10 | 37 |
colon | 1.96e-08 | 9 |
lung | 3.14e-08 | 22 |
respiratory tube | 3.14e-08 | 22 |
respiration organ | 3.14e-08 | 22 |
pair of lungs | 3.14e-08 | 22 |
lung primordium | 3.14e-08 | 22 |
lung bud | 3.14e-08 | 22 |
endo-epithelium | 3.27e-08 | 82 |
pituitary gland | 3.89e-08 | 2 |
major salivary gland | 1.09e-07 | 2 |
foregut | 1.13e-07 | 87 |
open tracheal system trachea | 1.17e-07 | 2 |
thoracic cavity element | 1.17e-07 | 34 |
thoracic cavity | 1.17e-07 | 34 |
thoracic segment of trunk | 1.22e-07 | 52 |
epithelial fold | 2.15e-07 | 47 |
thoracic segment organ | 2.20e-07 | 35 |
organ system subdivision | 3.01e-07 | 223 |
throat | 4.74e-07 | 2 |
large intestine | 7.73e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.40e-08 | 25 |
signet ring cell adenocarcinoma | 4.02e-08 | 2 |
bronchus cancer | 1.30e-07 | 7 |
bronchogenic carcinoma | 1.30e-07 | 7 |
carcinoma | 5.28e-07 | 106 |
clear cell adenocarcinoma | 7.31e-07 | 2 |