FFCP PHASE1:Hg19::chr22:37505742..37505761,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=164656 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16517 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-139bp_to_ENST00000406856,uc003aqt.1_5end | |||
|coexpression_cluster_id=C76 | |||
|description=CAGE_peak_1_at_TMPRSS6_5end | |||
|id=chr22:37505742..37505761,- | |||
|ontology_enrichment_celltype=CL:0000181!3.67e-09!12;CL:0000417!3.67e-09!12;CL:0000668!3.67e-09!12;CL:0000414!3.67e-09!12;CL:0000412!3.67e-09!12;CL:0000182!3.67e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:0002553;6.16e-09;1!CL:0000167;1.59e-08;1!CL:0000164;1.59e-08;1!CL:0000502;1.59e-08;1!CL:0000172;1.59e-08;1!CL:0000313;1.59e-08;1!CL:0000173;1.59e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,6.65e-09,1;CL:0000167,1.91e-08,1;CL:0000164,1.91e-08,1;CL:0000502,1.91e-08,1;CL:0000172,1.91e-08,1;CL:0000173,1.91e-08,1;CL:0002351,1.91e-08,1;CL:0000313,2.06e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.55e-08;30!CL:0002351;1.59e-08;1 | |||
|ontology_enrichment_disease=DOID:5093!1.60e-12!4;DOID:1612!1.60e-12!4;DOID:299!4.54e-10!25;DOID:305!3.56e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:2152;1.59e-08;1!DOID:4430;1.59e-08;1!DOID:5093;4.01e-08;4!DOID:1612;4.01e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.91e-08,1;DOID:2152,2.06e-08,1;DOID:5093,3.59e-08,4;DOID:1612,3.59e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0005911!8.39e-14!82;UBERON:0004921!2.97e-12!129;UBERON:0004185!2.97e-12!129;UBERON:0002368!3.06e-12!35;UBERON:0003929!4.59e-12!54;UBERON:0001007!1.20e-11!155;UBERON:0001555!1.20e-11!155;UBERON:0007026!1.20e-11!155;UBERON:0004119!6.45e-11!169;UBERON:0000925!6.45e-11!169;UBERON:0006595!6.45e-11!169;UBERON:0009497!1.10e-10!25;UBERON:0000015!1.10e-10!25;UBERON:0002423!1.10e-10!25;UBERON:0006235!1.10e-10!25;UBERON:0004161!1.10e-10!25;UBERON:0000949!2.24e-10!45;UBERON:0005057!3.39e-10!26;UBERON:0008835!3.55e-10!22;UBERON:0003894!3.55e-10!22;UBERON:0002107!9.99e-10!19;UBERON:0006925!9.99e-10!19;UBERON:0008836!9.99e-10!19;UBERON:0009854!1.18e-09!23;UBERON:0002530!1.67e-09!59;UBERON:0007499!9.69e-09!25;UBERON:0009856!2.46e-08!26;UBERON:0000077!2.97e-08!130;UBERON:0000007!1.16e-07!2;UBERON:0001041!1.32e-07!98;UBERON:0009569!1.36e-07!113;UBERON:0000160!4.87e-07!27;UBERON:0000466!5.14e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;4.83e-16;2!UBERON:0002107;5.14e-10;19!UBERON:0006925;5.14e-10;19!UBERON:0002368;1.03e-09;33!UBERON:0002171;1.01e-08;1!UBERON:0006518;1.01e-08;1!UBERON:0008949;1.01e-08;1!UBERON:0000101;1.01e-08;1!UBERON:0002167;1.01e-08;1!UBERON:0007029;1.59e-08;1!UBERON:0004911;1.59e-08;1!UBERON:0003296;1.81e-08;4!UBERON:0010133;1.81e-08;4!UBERON:0002423;1.48e-07;25!UBERON:0002108;8.92e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,5.41e-16,2;UBERON:0002107,5.14e-10,19;UBERON:0006925,5.14e-10,19;UBERON:0008836,5.14e-10,19;UBERON:0002368,6.50e-10,35;UBERON:0004921,1.18e-09,118;UBERON:0005911,3.53e-09,82;UBERON:0002171,9.74e-09,1;UBERON:0006518,9.74e-09,1;UBERON:0008949,9.74e-09,1;UBERON:0000101,9.74e-09,1;UBERON:0002167,9.74e-09,1;UBERON:0007029,1.13e-08,1;UBERON:0008835,1.28e-08,22;UBERON:0003894,1.28e-08,22;UBERON:0003296,1.92e-08,4;UBERON:0010133,1.92e-08,4;UBERON:0004911,2.06e-08,1;UBERON:0009854,3.11e-08,23;UBERON:0007499,1.48e-07,25;UBERON:0009497,1.48e-07,25;UBERON:0000015,1.48e-07,25;UBERON:0002423,1.48e-07,25;UBERON:0006235,1.48e-07,25;UBERON:0004161,1.48e-07,25;UBERON:0000949,1.59e-07,45;UBERON:0001007,2.15e-07,145;UBERON:0001555,2.15e-07,145;UBERON:0007026,2.15e-07,145;UBERON:0009856,2.96e-07,26;UBERON:0002530,3.90e-07,59;UBERON:0001041,5.15e-07,87;UBERON:0002108,9.73e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.3775174109154,36.3646070170722,7.68026878685825,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57117284469109,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.1910164127826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8665650299266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0.994147647766298,0,0,0,0,0,0,134.784020102038,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,1.5625665665114,0.0874599999961957,0,0,0,0.709163045303809,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,1.27600463892768,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787831823072237,0.741742725430498,0.808842526250219,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0862975946987,5.30027555648885,0,0,0,2.11444506695002,0.320362237703084,3.61569901729232,2.48543433208317,0,0,0.60896299190448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04334160082733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.00285374142735,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,0,0,0.451261970095544,0,0.781514011233092,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,3.03482802118316,4.78090601837725,0.354809480650555,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,1.11855431797792,0,0,0,0,0,1.94284397223656,0,0.795803100645473,0,0,0,0,0.463044948647668,1.09279780251979,0.470317296361523,0,1.17838273550813,0,0,0,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,3.7031878836078,0,0,0,0,0,0,0,0,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0.372448285775147,0,0,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@TMPRSS6 | |||
}} |
Revision as of 15:46, 21 January 2014
Short description: | p1@TMPRSS6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMPRSS6_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | -139bp_to_ENST00000406856, uc003aqt.1_5end |
EntrezGene: | TMPRSS6 |
HGNC: | 16517 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 6.65e-09 | 1 |
peptide hormone secreting cell | 1.91e-08 | 1 |
enteroendocrine cell | 1.91e-08 | 1 |
type D enteroendocrine cell | 1.91e-08 | 1 |
somatostatin secreting cell | 1.91e-08 | 1 |
pancreatic D cell | 1.91e-08 | 1 |
progenitor cell of endocrine pancreas | 1.91e-08 | 1 |
serous secreting cell | 2.06e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 5.41e-16 | 2 |
liver | 5.14e-10 | 19 |
digestive gland | 5.14e-10 | 19 |
liver bud | 5.14e-10 | 19 |
endocrine gland | 6.50e-10 | 35 |
subdivision of digestive tract | 1.18e-09 | 118 |
endo-epithelium | 3.53e-09 | 82 |
lower lobe of right lung | 9.74e-09 | 1 |
right lung lobe | 9.74e-09 | 1 |
lower lobe of lung | 9.74e-09 | 1 |
lobe of lung | 9.74e-09 | 1 |
right lung | 9.74e-09 | 1 |
surface | 1.13e-08 | 1 |
hepatic diverticulum | 1.28e-08 | 22 |
liver primordium | 1.28e-08 | 22 |
gland of diencephalon | 1.92e-08 | 4 |
neuroendocrine gland | 1.92e-08 | 4 |
epithelium of female gonad | 2.06e-08 | 1 |
digestive tract diverticulum | 3.11e-08 | 23 |
epithelial sac | 1.48e-07 | 25 |
epithelium of foregut-midgut junction | 1.48e-07 | 25 |
anatomical boundary | 1.48e-07 | 25 |
hepatobiliary system | 1.48e-07 | 25 |
foregut-midgut junction | 1.48e-07 | 25 |
septum transversum | 1.48e-07 | 25 |
endocrine system | 1.59e-07 | 45 |
digestive system | 2.15e-07 | 145 |
digestive tract | 2.15e-07 | 145 |
primitive gut | 2.15e-07 | 145 |
sac | 2.96e-07 | 26 |
gland | 3.90e-07 | 59 |
foregut | 5.15e-07 | 87 |
small intestine | 9.73e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.91e-08 | 1 |
ovary epithelial cancer | 2.06e-08 | 1 |
thoracic cancer | 3.59e-08 | 4 |
breast cancer | 3.59e-08 | 4 |