FFCP PHASE1:Hg19::chr15:74495394..74495448,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30650 | |||
|TSSclassifier=strong | |||
|UniProt=B3KPB8,Q9BX79 | |||
|association_with_transcript=107bp_to_NM_001142618,uc002axl.2,uc010bji.2,uc010bjj.1_5end | |||
|description=CAGE_peak_4_at_STRA6_5end | |||
|id=chr15:74495394..74495448,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.53e-11;19!CL:0002622;7.98e-08;3!CL:0000708;1.10e-07;3!CL:0000064;1.17e-07;3!CL:0000067;1.17e-07;3!CL:0005012;1.17e-07;3!CL:0002304;1.17e-07;3!CL:0000333;2.35e-07;5!CL:0000346;8.80e-07;3!CL:1000428;8.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.44e-11,19;CL:0002622,8.29e-08,3;CL:0000708,1.06e-07,3;CL:0000064,1.18e-07,3;CL:0000067,1.18e-07,3;CL:0005012,1.18e-07,3;CL:0002304,1.18e-07,3;CL:0000346,7.97e-07,3;CL:1000428,7.97e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000020!6.39e-10!23;UBERON:0001032!3.04e-09!24;UBERON:0004456!3.04e-09!24;UBERON:0002200!6.47e-09!11;UBERON:0006876!6.47e-09!11;UBERON:0007625!1.17e-08!11;UBERON:0000970!1.54e-08!20;UBERON:0000019!4.45e-08!19;UBERON:0000047!4.45e-08!19;UBERON:0004088!4.45e-08!19;UBERON:0003072!4.45e-08!19;UBERON:0003071!4.45e-08!19;UBERON:0004128!4.45e-08!19;UBERON:0001456!5.93e-08!21;UBERON:0002104!6.98e-08!21;UBERON:0000481!4.40e-07!347;UBERON:0002203!5.49e-07!6;UBERON:0001768!5.49e-07!6;UBERON:0005085!5.77e-07!29;UBERON:0000924!5.86e-07!173;UBERON:0006601!5.86e-07!173;UBERON:0004121!8.79e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;4.91e-16;11!UBERON:0007625;3.35e-15;11!UBERON:0000019;2.93e-14;19!UBERON:0000047;2.93e-14;19!UBERON:0004088;2.93e-14;19!UBERON:0010230;2.93e-14;19!UBERON:0002203;2.02e-13;6!UBERON:0001768;2.02e-13;6!UBERON:0002200;2.02e-13;6!UBERON:0000970;2.15e-13;20!UBERON:0002104;1.30e-12;21!UBERON:0001456;1.30e-12;21!UBERON:0001801;1.09e-11;14!UBERON:0000020;2.96e-11;23!UBERON:0001032;1.15e-10;24!UBERON:0004456;1.15e-10;24!UBERON:0000478;3.22e-10;24!UBERON:0000488;7.60e-10;4!UBERON:0003210;1.10e-07;3!UBERON:0001778;1.17e-07;3!UBERON:0001775;1.17e-07;3!UBERON:0005631;1.93e-07;10!UBERON:0000158;1.93e-07;10!UBERON:0000013;2.35e-07;5!UBERON:0002410;2.35e-07;5!UBERON:0010371;4.25e-07;31!UBERON:0000412;8.80e-07;3!UBERON:0001992;8.80e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,5.66e-16,11;UBERON:0007625,3.47e-15,11;UBERON:0002203,2.39e-13,6;UBERON:0001768,2.39e-13,6;UBERON:0002200,2.39e-13,6;UBERON:0000019,2.45e-13,20;UBERON:0000047,2.45e-13,20;UBERON:0010312,2.45e-13,20;UBERON:0004088,2.45e-13,20;UBERON:0010230,2.45e-13,20;UBERON:0003072,2.45e-13,20;UBERON:0004128,2.45e-13,20;UBERON:0003071,2.45e-13,20;UBERON:0000970,1.47e-12,21;UBERON:0002104,1.47e-12,21;UBERON:0005085,3.77e-12,31;UBERON:0001456,7.50e-12,22;UBERON:0001801,1.08e-11,14;UBERON:0005631,6.60e-11,14;UBERON:0000158,6.60e-11,14;UBERON:0000020,1.28e-10,24;UBERON:0001032,1.28e-10,24;UBERON:0004456,1.28e-10,24;UBERON:0000478,2.83e-10,24;UBERON:0000488,8.08e-10,4;UBERON:0003210,1.06e-07,3;UBERON:0001778,1.18e-07,3;UBERON:0001775,1.18e-07,3;UBERON:0000013,1.70e-07,5;UBERON:0002410,1.70e-07,5;UBERON:0003124,3.12e-07,7;UBERON:0000412,7.97e-07,3;UBERON:0001992,7.97e-07,3;UBERON:0004121,8.10e-07,171;UBERON:0000924,8.10e-07,171;UBERON:0006601,8.10e-07,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,2.18441372130172,2.11013582582763,1.73272894144065,0.994192127183747,0,0,0,0,0.861847406537515,0.204000691244253,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0.722878304769133,0,0,0,0,5.0103453096956,4.43458794925128,3.51339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573673241497627,0,0,0,0.24666754841716,0,0.134710672069688,0,9.83823279692054,14.404398112,1.64025002283658,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0.336672227908132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0.116193942869518,0.725627385107593,0,0,1.56449532329816,5.14592750554308,1.38134921352481,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0,7.03428022223955,0.109750285408626,0,0,0.0925884451585296,0.651616610620649,0,5.77325368101093,2.78232971940184,5.16598254637615,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36393253036082,7.84728123899904,3.0802080044799,3.10252117818667,0,0.845302752556,7.71220538096124,6.24044621468197,0,0,0,0.285955987316295,2.71310802695722,0.823240336780769,0,0.355391948742546,2.37585561880029,0,0.871533458600294,0.799783929456456,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,0,0,0,0,2.08575535922538,6.00204625271613,0.813795071099207,1.45579603071565,0.356857977594324,0.315404830067869,2.45996971484698,0,0,0,0,0,2.60650843404249,3.32861967686659,6.86286847621712,0,0,0,1.81876542867756,0,3.0239029332968,0,0,0,0,0,0,0,0,1.24293207719189,0.0821271560138091,0,0.116210378459959,0,0,0.0920809889358963,4.36294903025506,9.650831904356,3.2781103739856,0.451199612907412,0,0,0,0.527758144464379,0,0,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,1.02580050046556,2.95213181129735,0.325378394664303,0.618246069886334,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.429680979473094,0.145016693914229,0.0852266274161009,0.178064071293475,0.165284915360978,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0.37064843820784,0,7.07100901783368,0,0.190630193923825,0,0.42793898803392,5.72765846266686,0,0.359744915166629,0.823611089208164,0.824686816419805,0,0,0,0,0,0,3.00299805097569,0,0,0,0,0,0.578775534266688,0,0.202910376962704,0.30982349809975,0,0.286822704408103,0.196498082026242,0,0.354761064070598,0,0,1.13841952129715,5.94889024416471,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0.355709216742071,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44876399560722,0,0,0,0,0,0,0,0,0.844501632511974,0,0,0.251932747854276,0,0.123084805461069,0,0.179736702294654,4.29650819221462,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0.796554137998498,1.27126825146383,0.472775363535873,1.72371686620732,0.291604613383254,0.347249989866585,0,0,0,0,0,1.09692698576986,0,0,2.6932590476329,0,0.46112780877612,0.359030577639089,0.325942115766024,1.27600463892768,3.38911095586891,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,1.53036380815245,1.0741718536843,0.150323419414493,0.103688191397247,9.30515421790059,8.60579085276297,5.02292669451561,7.16834578637753,0,0,0,1.37189356380129,0.0870592065804026,0.52418000472609,0,0.19351266257817,0,0.0821154570532092,0,0.176512253383001,0.451961481561065,0,0,0.189932387867636,0.977756913674015,0.0801588202515337,0.213452994739353,1.79828648623917,0.432271251462318,0.114536596165916,0,0,0,0,0,0.104602846312333,1.12198039399954,0.288950589901519,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0.242998226632099,0,0,0.104909176269996,0,0,0,0,0,0,0,0,2.93928624098468,0,0,0,1.13312091520126,0,0,0,0,0.855434189421647,1.40963004463334,0.106787412567695,0,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0.366078794705889,0,1.14681839138014,0.443716206147409,0.372578417648301,1.10678907948985,0.124980407962107,0.454947352624943,0,8.23430368943601,0.468334905806882,0,0.597019211547496,0,0,0,0,0,0,0,0.310874401165561,0,0.159296767163702,0,0,0.414706207840855,5.58267600571789,4.69570555630561,1.05180326298053,4.95046775819434,0.813741466409323,0,0.751873899297419,0,6.36953421917786,0,0,0,0,0,0,0,0.680117776536817,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68578179737669,11.7529044422383,4.71797825567689,1.74735421107222,0.678930119816101,0,0.247871528518004,0.558644917973244,0,0,0,0.705351887381368,0,0.128458450192919,0,0,0,0,0.138314504928436,0.161475645631851,0,1.57036349601641,0,0,0.346576998451015,0,2.0710797781803,0.397832444232549,0.225630985047772,1.61364054962816,0,0,0,2.06998520703863,0,0,0.206686796501184,0.0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| |||
|short_description=p4@STRA6 | |||
}} |
Revision as of 00:30, 12 January 2014
Short description: | p4@STRA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_STRA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 107bp_to_NM_001142618, uc002axl.2, uc010bji.2, uc010bjj.1_5end |
EntrezGene: | STRA6 |
HGNC: | 30650 |
UniProt: | B3KPB8Q9BX79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.44e-11 | 19 |
prostate stromal cell | 8.29e-08 | 3 |
leptomeningeal cell | 1.06e-07 | 3 |
ciliated cell | 1.18e-07 | 3 |
ciliated epithelial cell | 1.18e-07 | 3 |
multi-ciliated epithelial cell | 1.18e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.18e-07 | 3 |
hair follicle dermal papilla cell | 7.97e-07 | 3 |
stem cell of epidermis | 7.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 5.66e-16 | 11 |
pigment epithelium of eye | 3.47e-15 | 11 |
vasculature of eye | 2.39e-13 | 6 |
uvea | 2.39e-13 | 6 |
vasculature of head | 2.39e-13 | 6 |
camera-type eye | 2.45e-13 | 20 |
simple eye | 2.45e-13 | 20 |
immature eye | 2.45e-13 | 20 |
ocular region | 2.45e-13 | 20 |
eyeball of camera-type eye | 2.45e-13 | 20 |
optic cup | 2.45e-13 | 20 |
optic vesicle | 2.45e-13 | 20 |
eye primordium | 2.45e-13 | 20 |
eye | 1.47e-12 | 21 |
visual system | 1.47e-12 | 21 |
ectodermal placode | 3.77e-12 | 31 |
face | 7.50e-12 | 22 |
anterior segment of eyeball | 1.08e-11 | 14 |
extraembryonic membrane | 6.60e-11 | 14 |
membranous layer | 6.60e-11 | 14 |
sense organ | 1.28e-10 | 24 |
sensory system | 1.28e-10 | 24 |
entire sense organ system | 1.28e-10 | 24 |
extraembryonic structure | 2.83e-10 | 24 |
atypical epithelium | 8.08e-10 | 4 |
blood-cerebrospinal fluid barrier | 1.06e-07 | 3 |
ciliary epithelium | 1.18e-07 | 3 |
ciliary body | 1.18e-07 | 3 |
sympathetic nervous system | 1.70e-07 | 5 |
autonomic nervous system | 1.70e-07 | 5 |
chorion | 3.12e-07 | 7 |
dermal papilla | 7.97e-07 | 3 |
papillary layer of dermis | 7.97e-07 | 3 |
ectoderm-derived structure | 8.10e-07 | 171 |
ectoderm | 8.10e-07 | 171 |
presumptive ectoderm | 8.10e-07 | 171 |