FFCP PHASE1:Hg19::chr12:33049691..33049756,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5318 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9024 | |||
|TSSclassifier=strong | |||
|UniProt=Q99959 | |||
|association_with_transcript=-1bp_to_ENST00000070846_5end | |||
|description=CAGE_peak_1_at_PKP2_5end | |||
|id=chr12:33049691..33049756,- | |||
|ontology_enrichment_celltype=CL:0000066!1.19e-32!254;CL:0000223!6.18e-16!59;CL:0002076!1.02e-12!43;CL:0000076!2.47e-11!62;CL:0002251!2.54e-09!21;CL:0000077!4.11e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002251;5.74e-11;20!CL:0002076;6.93e-11;42!CL:0000077;1.99e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.04e-33,253;CL:0000223,1.90e-17,58;CL:0002076,4.20e-14,42;CL:0002251,5.71e-11,20;CL:0000076,1.23e-10,63;CL:0000077,2.03e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;2.46e-09;58 | |||
|ontology_enrichment_disease=DOID:305!7.77e-20!106;DOID:0050687!4.84e-12!143;DOID:1749!9.56e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.71e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.61e-20,106;DOID:0050687,9.60e-13,143;DOID:1749,4.94e-07,14;DOID:162,5.66e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.41e-18!169;UBERON:0000925!2.41e-18!169;UBERON:0006595!2.41e-18!169;UBERON:0004921!1.61e-16!129;UBERON:0004185!1.61e-16!129;UBERON:0000062!9.91e-16!511;UBERON:0001048!3.18e-15!168;UBERON:0001007!7.66e-15!155;UBERON:0001555!7.66e-15!155;UBERON:0007026!7.66e-15!155;UBERON:0000466!6.93e-13!126;UBERON:0000922!7.88e-13!612;UBERON:0000077!8.87e-13!130;UBERON:0001041!3.23e-12!98;UBERON:0000468!5.31e-12!659;UBERON:0002050!2.85e-11!605;UBERON:0005423!2.85e-11!605;UBERON:0000923!4.42e-11!604;UBERON:0005291!4.42e-11!604;UBERON:0006598!4.42e-11!604;UBERON:0002532!4.42e-11!604;UBERON:0000064!5.45e-11!219;UBERON:0000481!1.04e-10!347;UBERON:0000467!4.22e-10!625;UBERON:0005911!4.68e-10!82;UBERON:0007023!4.73e-10!115;UBERON:0000480!7.27e-10!626;UBERON:0002365!2.68e-09!31;UBERON:0002330!2.68e-09!31;UBERON:0000464!8.49e-09!104;UBERON:0002530!8.62e-09!59;UBERON:0001004!2.67e-08!72;UBERON:0005177!5.95e-08!107;UBERON:0000063!1.32e-07!97;UBERON:0004111!3.20e-07!241;UBERON:0000119!3.64e-07!312;UBERON:0000483!4.22e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.34e-10;33!UBERON:0002365;1.44e-09;31!UBERON:0002330;1.44e-09;31!UBERON:0005409;3.28e-07;22!UBERON:0002423;7.97e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.49e-19,160;UBERON:0000925,1.49e-19,160;UBERON:0006595,1.49e-19,160;UBERON:0004921,8.23e-18,118;UBERON:0001007,7.64e-16,145;UBERON:0001555,7.64e-16,145;UBERON:0007026,7.64e-16,145;UBERON:0001048,1.04e-15,160;UBERON:0011216,2.55e-14,223;UBERON:0001041,1.49e-13,87;UBERON:0000922,7.79e-11,592;UBERON:0005911,1.42e-10,82;UBERON:0007023,7.12e-10,114;UBERON:0002365,7.73e-10,31;UBERON:0002330,7.73e-10,31;UBERON:0005423,1.38e-09,581;UBERON:0002530,4.03e-09,59;UBERON:0005177,4.19e-09,101;UBERON:0001004,8.32e-09,74;UBERON:0002050,3.72e-08,564;UBERON:0000923,2.58e-07,560;UBERON:0010316,2.58e-07,560;UBERON:0005291,2.58e-07,560;UBERON:0006598,2.58e-07,560;UBERON:0010317,2.58e-07,560;UBERON:0002532,2.58e-07,560;UBERON:0004111,2.81e-07,240;UBERON:0003929,5.20e-07,54;UBERON:0009497,8.04e-07,25;UBERON:0000015,8.04e-07,25;UBERON:0002423,8.04e-07,25;UBERON:0006235,8.04e-07,25;UBERON:0004161,8.04e-07,25 | |||
|phase1_expression=0.363356758541113,4.06790995392868,0.986680828671798,2.00146596706261,1.78784437770915,0.872338524100369,2.53299878168311,0,4.70134130759709,13.02389863458,6.97801167972428,25.5576405392302,18.1999214977633,0.37129905888014,0,0,0,0,0.487932798790507,1.23121058076788,2.04000691244253,2.5076377718247,2.57612388417951,3.83248390204076,3.51519390865448,0.0764134057479513,0,0,1.18009283054671,1.15148819429164,5.26374819274658,23.9049518364521,19.5783847205863,20.7062245693401,0,0,12.9184193307333,0.553995408531877,1.60435557976113,1.95309783644267,0.671746422719773,0,0.257575567634187,0.436194716338694,0.755751887377619,0,0.929716147622738,0.411167888021826,0,0.28769239232215,0.768482119587302,0.47296445977717,0.344745680736619,1.93645405075148,0,1.31769637679823,0.272906150057846,0.674170453335254,1.53041946185451,0.320929027076094,0.639337125799041,0.659702600373432,0.598390972864896,0,0.870627715885752,1.13477044938228,1.24564449799115,0.502497330513487,0,0.65156653411535,1.81619850790011,0.368277635987565,0.949387162322653,1.26753171787165,3.18906449947565,0.419317291016752,1.23561494261145,2.25265339262259,1.44653028027372,0.855038231223746,1.39241674039363,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,3.96513985737078,0,9.74521113667785,0.983548850569165,0.393010762749165,0.205601498999509,0,0.651844533267181,0,0,0.222820913770347,0,0.443067789167242,0.270803863765016,0.768547918354051,1.1705341280389,0.493313713811028,1.65810010671509,0,0.741432815810302,0,0,0.226618685395132,0,0,0,0.637130828648193,0,0,0.150575119077773,0.511946444617674,1.24930726552346,1.18388626022008,0.821127996921047,0,0,0,31.694892620815,59.6923765136236,75.1831863639958,0,0,0,0,0,3.21418378357831,7.53879951372717,5.18225235589444,7.66227591661619,25.500670180478,21.8762821242813,0,0.174129737299267,0.930705723632056,0,0.571994910780128,0,0.596287222100115,1.72046919021225,5.20710752411391,14.1326985481002,8.80948816040802,7.15306909044175,10.4497483268405,0,0,1.00416183829401,0.402829317109147,0.760272105718513,3.90499292077071,0.735326160691737,6.48113558305408,4.46498641420399,3.59246996201872,2.0270066486998,0,0,0.183201743930407,0,0,33.5792420149751,0,2.5326102332916,5.95841313659485,3.72887606973458,1.41867352879343,20.7450712052654,4.2699598291882,6.41335625884616,56.3291974073577,12.9322245186901,9.97117608992098,7.41651395460164,6.91411109375999,1.17160715916898,0,2.85235910772225,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,6.37112953356618,12.9351265526923,0.168336113954066,0,0,0,0,0,33.6893583985262,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0,2.42469085228218,0,0,0,49.8613001161306,46.0940943798511,65.1046431533039,15.7346080907178,11.3975600756477,22.4254309738171,17.9333625176591,18.9240638156721,5.47466038613745,0,0,0,0,0,9.10962360306798,11.1265895451547,9.15841913557232,9.37498768225348,12.6370077573596,9.25355414533277,7.82021587328954,10.0072947213927,6.92544882503503,0,5.60967095213783,44.4499932237912,32.3419165048192,39.2940607947676,55.0383241339471,34.8566044942028,0,228.143553497476,7.89211927373218,29.4130764895116,21.3563331189477,57.7036301642761,45.8312803534721,0.977424915930974,0,10.1031939417691,4.75314660397815,49.7812863559884,1.58803092537181,2.77791307545966,2.09279567458058,7.11183958163348,3.43394464837949,0,0,0,33.7441802352397,30.9087115885902,30.7651961015979,48.7198363503495,50.2796713629154,30.2872316540517,0,0,0.829312462163088,2.16179930125442,0.37872730027914,0.190493682876507,0,0,5.13217338068116,0,0,0,2.46688385559794,8.28324130783232,1.3200891447771,64.5065861631311,0,0,0.26593811658487,0,0,0,0,32.7419605477158,29.3015666911379,10.70212437815,0,31.9852753868291,1.58390374586686,8.741741934728,13.0730018790044,28.6922484692504,0,0,0,0.239624855491583,0,0,0,0.410952645100767,0,0,0,0.215627574859517,0.385029108839245,0,1.30139853857622,1.54657762555539,1.50764638800914,0.637938751653163,1.49801404789436,0,0.414415513436035,0.613457458595699,0,0,0.207970861530807,0,1.10391690523754,0,0,0,2.0694614258501,0,0.184369168541703,0,1.37060810223918,0.343143423810856,2.27444828735176,0.647142602455851,0.640365346820666,4.85004114314015,23.3009615314696,25.7031749330228,0.248107807818777,0.460385919864187,0,1.53766979106841,0.511707249066704,3.37793234401576,1.48418066444991,0,0.355123450626254,0,0,0,246.553277166909,33.083567600042,31.5837792050124,0.459257792658427,0.182091168006717,0.262248829918848,4.96319574198153,7.08541101360616,3.92174884588428,10.2297457257282,4.64427167128653,0,0.340187410553031,0.863663664408557,0,8.67028600140329,6.02027728625824,10.1950509218015,8.31076008928724,6.94011739638753,0.438519753291869,0,11.5402556302375,26.2411716559765,10.4121086292577,54.6117361732928,0,0,17.2279661398852,13.6512651667669,4.82051789532479,0,0,0.15350367472613,0.137836572484531,0.214840489736547,0.435050081742686,0.0852266274161009,0.445160178233687,20.6606144201223,25.369088892194,31.2651145611731,26.7056541458652,0,0,0,0.616067160352178,0.532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| |||
|short_description=p1@PKP2 | |||
}} |
Revision as of 12:56, 11 January 2014
Short description: | p1@PKP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PKP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000070846_5end |
EntrezGene: | PKP2 |
HGNC: | 9024 |
UniProt: | Q99959 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.04e-33 | 253 |
endodermal cell | 1.90e-17 | 58 |
endo-epithelial cell | 4.20e-14 | 42 |
epithelial cell of alimentary canal | 5.71e-11 | 20 |
squamous epithelial cell | 1.23e-10 | 63 |
mesothelial cell | 2.03e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.49e-19 | 160 |
endoderm | 1.49e-19 | 160 |
presumptive endoderm | 1.49e-19 | 160 |
subdivision of digestive tract | 8.23e-18 | 118 |
digestive system | 7.64e-16 | 145 |
digestive tract | 7.64e-16 | 145 |
primitive gut | 7.64e-16 | 145 |
primordium | 1.04e-15 | 160 |
organ system subdivision | 2.55e-14 | 223 |
foregut | 1.49e-13 | 87 |
embryo | 7.79e-11 | 592 |
endo-epithelium | 1.42e-10 | 82 |
adult organism | 7.12e-10 | 114 |
exocrine gland | 7.73e-10 | 31 |
exocrine system | 7.73e-10 | 31 |
developing anatomical structure | 1.38e-09 | 581 |
gland | 4.03e-09 | 59 |
trunk region element | 4.19e-09 | 101 |
respiratory system | 8.32e-09 | 74 |
embryonic structure | 3.72e-08 | 564 |
germ layer | 2.58e-07 | 560 |
germ layer / neural crest | 2.58e-07 | 560 |
embryonic tissue | 2.58e-07 | 560 |
presumptive structure | 2.58e-07 | 560 |
germ layer / neural crest derived structure | 2.58e-07 | 560 |
epiblast (generic) | 2.58e-07 | 560 |
anatomical conduit | 2.81e-07 | 240 |
gut epithelium | 5.20e-07 | 54 |
epithelium of foregut-midgut junction | 8.04e-07 | 25 |
anatomical boundary | 8.04e-07 | 25 |
hepatobiliary system | 8.04e-07 | 25 |
foregut-midgut junction | 8.04e-07 | 25 |
septum transversum | 8.04e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.61e-20 | 106 |
cell type cancer | 9.60e-13 | 143 |
squamous cell carcinoma | 4.94e-07 | 14 |
cancer | 5.66e-07 | 235 |