MCL coexpression mm9:2084: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0.526181258129675,0.113689570421085,0.0228344671311385,0.0171594316221685,0.0232955559438984,0.827570640091054,0.69912593367751,0.0866495318817805,0.0400380762665588,0,0.15471256368877,0.18737080420156,0.066721267682841,0.0505884323627801,0.0299450922540768,0,0.0161137880934194,0,0,0,0,0.0349734566612038,0.024403695044288,0.0217438549458489,0,0,0,0,0,0,0.0379597560589355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284760565298805,0.251405483484983,0,0,0,0.0200046982636228,0,0,0,0,0,0,0,0,0,0,0,0,0,0.021667225770632,0,0,0,0,0,0,0,0,0,0,0,0,0.0280362980087327,0,0,0,0,0.0772816677372418,0,0,0,0,0,0.0667110420875736,0,0,0,0,0,0,0,0,0.0245189459510953,0,0.0340713199571934,0.436021397639081,0,0.0820484828132294,0,0,0,0,0,0,0.0698233061770739,0,0,0,0,0,0,0,0.0247004654022355,0.0122865822223865,0,0,0,0,0,0,0,0.0204976815938839,0.0163240725348775,0,0.0471659844170182,0,0,0.0132811827572778,0,0.0179762183352813,0.0152409828565565,0.00714652363876167,0,0.00972472422872995,0.0249808488038572,0,0,0.0175973179037787,0,0.0480089918185805,0,0,0.0197078987099768,0.0577534876850433,0,0,0,0,0,0,0,0,0,0.0258032210994128,0.0347779712212284,0.0165404532561555,0.0308268981088045,0.0163143899467127,0.0648087120259924,0.0215499128982231,0.0466561518682272,0,0.0106344882395355,0.0550817898627685,0.0460948506469432,0.0209909979794233,0,0,0,0.0218013851437485,0.0539125929071552,0,0.0165534214268825,0.0486868322374133,0.0197008540950864,0.0193387133502521,0,0,0.0197175878056837,0,0,0,0,0.0192467611431688,0,0.0311405744434194,0,0.0454818514307537,0,0,0,0,0,0,0,0,0,0,0,0.0967442655275968,0.0343496812046805,0.029486576326769,0,0,0,0.114168746826582,0,0,0.0170228073375651,0.0228895045139265,0.0627426684755505,0.0654619980187677,0.0357745766632048,0,0.068877290782757,0.102552871441835,0.0472526612643332,0.11708374687747,0.0737548640761156,0,0,0.0434250504531922,0.0807483766543217,0.0323320383475661,0,0,0.0443799301656463,0,0,0,0,0,0,0,0,0,0,0.0144108295356794,0.0177923689874227,0.0163843750890379,0.0165786968781602,0,0,0,0,0.0280927500449092,0,0.0499142369709586,0,0,0.0531849293548117,0,0,0.0318118128455325,0.0179761230370899,0,0,0.017725496390744,0,0.016539443618902,0,0,0,0,0,0,0.0180568456009837,0.0232454512881644,0.0308225554636773,0,0,0.0490444856818288,0.0407433005351683,0,0.10208641368829,0.0540620543550285,0.108011454478301,0,0.0142215890540973,0.0140546428192639,0,0,0,0,0,0,0,0.0338548137962508,0,0.0624639975619578,0,0,0,0,0,0,0,0,0,0,0,0.0274814951426755,0.251161231671067,0.161645448357821,0.467857668093223,0.512695129573469,0.424398811915696,0.286054113493354,0.35018042033269,0.350043242585994,0.24026140309706,0.246739653211737,0.226970377715886,0.255800311852815,0.276038445729348,0.260623828926108,0,0,0,0,0.0813397508051541,0.0373501741982983,0.0182601010688612,0.0210876125277009,0,0,0,0,0,0,0,0.0560051613000642,0.0403660490655545,0,0,0,0,0.034229042449623,0.0236271032876169,0,0,0,0.020339983033976,0,0.0244615276944339,0,0.034753406753808,0,0.025813910256097,0.0172602846226397,0.042293190966546,0.0119047943476222,0.049576804611637,0,0.0149096823799433,0,0.0177379980883561,0,0,0.0097651853750898,0.017637724668944,0.0364791508700876,0.0253568302075752,0.0138258593377233,0.048360620861752,0.0243442052522616,0.0102004583425805,0,0.058614708250051,0.019151611352809,0.0242110490140042,0.0228227723193863,0,0,0.0216425781243506,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.578187584577219,0.130378134259189,0,0,0,0.844472782848455,0.714196439187012,0.062432954297476,0.0400380762665588,0,0.143669040685193,0.147573397657905,0,0.0518325320548473,0.0205563265474198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236880264493592,0.263054781809746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0234784353458152,0.368496417890754,0,0.0994178987032863,0,0,0,0,0,0,0.0844866805693339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0254617646470484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239809638088447,0,0,0,0.0296301996785983,0,0,0,0,0,0,0,0,0,0,0,0.0378146482960409,0,0,0.0486868322374133,0,0,0,0,0,0,0,0,0,0,0,0.0133149461563917,0,0.0316664407153844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132575718524345,0,0,0,0,0.0627426684755505,0.0463679768904873,0,0,0,0.120215008744062,0.0329509896628099,0.0990115454436879,0.0293361777120366,0,0,0,0,0.0323320383475661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0499142369709586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342545026818701,0.0407433005351683,0,0.106901036464273,0.055643654597214,0.0894734883806707,0,0,0,0,0,0,0,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251161231671067,0.113990974502719,0.519488048820409,0.586144914153701,0.429327428114337,0.276796971799958,0.317705366388909,0.347316940660972,0.244653858049601,0.206245392135032,0.205463431268847,0.261915016959512,0.290626671486374,0.243272486410025,0,0,0,0,0.0383547285828163,0.0373501741982983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034229042449623,0,0,0,0,0,0,0,0,0,0,0.0134759471663239,0,0,0,0,0,0,0,0,0,0,0,0.017637724668944,0.0364791508700876,0,0,0,0.0243442052522616,0,0,0.058614708250051,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000084!8.24e-07!11;CL:0000827!8.24e-07!11;CL:0000791!8.35e-07!9;CL:0000789!8.35e-07!9;CL:0002420!8.35e-07!9;CL:0002419!8.35e-07!9;CL:0000790!8.35e-07!9|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0004177!1.18e-23!29;UBERON:0005057!1.18e-23!29;UBERON:0000077!3.91e-22!35;UBERON:0002193!4.24e-19!48;UBERON:0002405!4.24e-19!48;UBERON:0002390!5.46e-19!45;UBERON:0003061!5.46e-19!45;UBERON:0002370!7.28e-19!23;UBERON:0000974!7.28e-19!23;UBERON:0004807!7.28e-19!23;UBERON:0005058!7.28e-19!23;UBERON:0003351!7.28e-19!23;UBERON:0009113!7.28e-19!23;UBERON:0003295!7.28e-19!23;UBERON:0009722!7.28e-19!23;UBERON:0005562!7.28e-19!23;UBERON:0007690!7.28e-19!23;UBERON:0000065!6.70e-18!41;UBERON:0006562!7.41e-18!24;UBERON:0003408!7.41e-18!24;UBERON:0001557!7.41e-18!24;UBERON:0001042!7.41e-18!24;UBERON:0008814!7.41e-18!24;UBERON:0009145!7.41e-18!24;UBERON:0001004!2.66e-17!42;UBERON:0000072!2.75e-15!27;UBERON:0000063!6.87e-12!35;UBERON:0001041!1.17e-11!80;UBERON:0007811!3.36e-10!36;UBERON:0003081!5.66e-10!87;UBERON:0005911!1.02e-08!69;UBERON:0000153!9.20e-08!43;UBERON:0004921!1.28e-07!114;UBERON:0001007!2.43e-07!116;UBERON:0001555!2.43e-07!116;UBERON:0007026!2.43e-07!116;UBERON:0004119!4.51e-07!118;UBERON:0000925!4.51e-07!118;UBERON:0006595!4.51e-07!118;UBERON:0000926!8.38e-07!120;UBERON:0004120!8.38e-07!120;UBERON:0006603!8.38e-07!120|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,1.21364,0.704257,0.803568,0.96814,0.381467,0.162942,0.755749,0.790506,0.37041,0.81685,1.2551,0,1.02248,0.473993,0.352304,0.683591,1.39891,0.57409,0.815872,0.481455,0.620553,0.846564,0.906602,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,0.089443,0.460474,0.786577,1.10929,0.40068,0.478558,0.717547,1.04032,0.504971,0.0986756,0.675898,0.938241,0.744678,0.49007,0.539131,1.0041,0.875451,0.771943,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,4.84462,0.362446,1.20828,0.11855,0.129654,0.791209,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,1.34553,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.569254,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,0.0824127|tfbs_overrepresentation_jaspar=MA0003.1;0.0356887,MA0004.1;0.6888,MA0006.1;0.497533,MA0007.1;0.672186,MA0009.1;1.15569,MA0014.1;0.0809287,MA0017.1;0.528196,MA0019.1;0.964875,MA0024.1;1.11019,MA0025.1;1.39562,MA0027.1;2.81824,MA0028.1;0.509589,MA0029.1;1.08753,MA0030.1;1.09438,MA0031.1;1.05719,MA0038.1;0.846479,MA0040.1;1.16866,MA0041.1;0.604221,MA0042.1;0.589368,MA0043.1;1.25564,MA0046.1;1.1929,MA0048.1;0.266382,MA0050.1;0.731539,MA0051.1;0.856094,MA0052.1;1.17701,MA0055.1;0.125758,MA0056.1;0,MA0057.1;0.251896,MA0058.1;0.581673,MA0059.1;0.59559,MA0060.1;0.403071,MA0061.1;0.438628,MA0063.1;0,MA0066.1;0.834648,MA0067.1;1.50873,MA0068.1;0.256913,MA0069.1;1.17737,MA0070.1;1.16732,MA0071.1;0.73062,MA0072.1;1.15853,MA0073.1;0.00221226,MA0074.1;0.795862,MA0076.1;0.550092,MA0077.1;1.13603,MA0078.1;0.891476,MA0081.1;0.621611,MA0083.1;1.25482,MA0084.1;1.84013,MA0087.1;1.21037,MA0088.1;0.582815,MA0089.1;0,MA0090.1;0.650768,MA0091.1;0.703314,MA0092.1;0.651119,MA0093.1;0.519148,MA0095.1;0,MA0098.1;0,MA0100.1;0.783305,MA0101.1;0.605676,MA0103.1;0.540576,MA0105.1;0.313353,MA0106.1;0.899777,MA0107.1;0.533522,MA0108.2;0.989014,MA0109.1;0,MA0111.1;0.666525,MA0113.1;0.869608,MA0114.1;0.43587,MA0115.1;1.25852,MA0116.1;0.497293,MA0117.1;1.22527,MA0119.1;0.606338,MA0122.1;1.24573,MA0124.1;1.45461,MA0125.1;1.37907,MA0130.1;0,MA0131.1;0.960068,MA0132.1;0,MA0133.1;0,MA0135.1;1.29308,MA0136.1;0.817395,MA0139.1;0.365453,MA0140.1;0.78318,MA0141.1;0.563066,MA0142.1;1.04199,MA0143.1;0.887119,MA0144.1;1.11951,MA0145.1;0.608454,MA0146.1;0.313734,MA0147.1;0.453952,MA0148.1;0.706718,MA0149.1;1.4861,MA0062.2;0.319836,MA0035.2;0.788288,MA0039.2;0.0220513,MA0138.2;0.951653,MA0002.2;0.368961,MA0137.2;1.37638,MA0104.2;0.386166,MA0047.2;0.845655,MA0112.2;0.211985,MA0065.2;0.212467,MA0150.1;0.67206,MA0151.1;0,MA0152.1;0.84577,MA0153.1;1.31015,MA0154.1;0.263609,MA0155.1;0.230016,MA0156.1;0.549102,MA0157.1;1.0083,MA0158.1;0,MA0159.1;1.1762,MA0160.1;0.71003,MA0161.1;0,MA0162.1;0.10667,MA0163.1;0.0996272,MA0164.1;0.817786,MA0080.2;0.534538,MA0018.2;0.828253,MA0099.2;0.944966,MA0079.2;0.000201415,MA0102.2;1.8929,MA0258.1;0.419871,MA0259.1;0.441366,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0.526181258129675,0.113689570421085,0.0228344671311385,0.0171594316221685,0.0232955559438984,0.827570640091054,0.69912593367751,0.0866495318817805,0.0400380762665588,0,0.15471256368877,0.18737080420156,0.066721267682841,0.0505884323627801,0.0299450922540768,0,0.0161137880934194,0,0,0,0,0.0349734566612038,0.024403695044288,0.0217438549458489,0,0,0,0,0,0,0.0379597560589355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284760565298805,0.251405483484983,0,0,0,0.0200046982636228,0,0,0,0,0,0,0,0,0,0,0,0,0,0.021667225770632,0,0,0,0,0,0,0,0,0,0,0,0,0.0280362980087327,0,0,0,0,0.0772816677372418,0,0,0,0,0,0.0667110420875736,0,0,0,0,0,0,0,0,0.0245189459510953,0,0.0340713199571934,0.436021397639081,0,0.0820484828132294,0,0,0,0,0,0,0.0698233061770739,0,0,0,0,0,0,0,0.0247004654022355,0.0122865822223865,0,0,0,0,0,0,0,0.0204976815938839,0.0163240725348775,0,0.0471659844170182,0,0,0.0132811827572778,0,0.0179762183352813,0.0152409828565565,0.00714652363876167,0,0.00972472422872995,0.0249808488038572,0,0,0.0175973179037787,0,0.0480089918185805,0,0,0.0197078987099768,0.0577534876850433,0,0,0,0,0,0,0,0,0,0.0258032210994128,0.0347779712212284,0.0165404532561555,0.0308268981088045,0.0163143899467127,0.0648087120259924,0.0215499128982231,0.0466561518682272,0,0.0106344882395355,0.0550817898627685,0.0460948506469432,0.0209909979794233,0,0,0,0.0218013851437485,0.0539125929071552,0,0.0165534214268825,0.0486868322374133,0.0197008540950864,0.0193387133502521,0,0,0.0197175878056837,0,0,0,0,0.0192467611431688,0,0.0311405744434194,0,0.0454818514307537,0,0,0,0,0,0,0,0,0,0,0,0.0967442655275968,0.0343496812046805,0.029486576326769,0,0,0,0.114168746826582,0,0,0.0170228073375651,0.0228895045139265,0.0627426684755505,0.0654619980187677,0.0357745766632048,0,0.068877290782757,0.102552871441835,0.0472526612643332,0.11708374687747,0.0737548640761156,0,0,0.0434250504531922,0.0807483766543217,0.0323320383475661,0,0,0.0443799301656463,0,0,0,0,0,0,0,0,0,0,0.0144108295356794,0.0177923689874227,0.0163843750890379,0.0165786968781602,0,0,0,0,0.0280927500449092,0,0.0499142369709586,0,0,0.0531849293548117,0,0,0.0318118128455325,0.0179761230370899,0,0,0.017725496390744,0,0.016539443618902,0,0,0,0,0,0,0.0180568456009837,0.0232454512881644,0.0308225554636773,0,0,0.0490444856818288,0.0407433005351683,0,0.10208641368829,0.0540620543550285,0.108011454478301,0,0.0142215890540973,0.0140546428192639,0,0,0,0,0,0,0,0.0338548137962508,0,0.0624639975619578,0,0,0,0,0,0,0,0,0,0,0,0.0274814951426755,0.251161231671067,0.161645448357821,0.467857668093223,0.512695129573469,0.424398811915696,0.286054113493354,0.35018042033269,0.350043242585994,0.24026140309706,0.246739653211737,0.226970377715886,0.255800311852815,0.276038445729348,0.260623828926108,0,0,0,0,0.0813397508051541,0.0373501741982983,0.0182601010688612,0.0210876125277009,0,0,0,0,0,0,0,0.0560051613000642,0.0403660490655545,0,0,0,0,0.034229042449623,0.0236271032876169,0,0,0,0.020339983033976,0,0.0244615276944339,0,0.034753406753808,0,0.025813910256097,0.0172602846226397,0.042293190966546,0.0119047943476222,0.049576804611637,0,0.0149096823799433,0,0.0177379980883561,0,0,0.0097651853750898,0.017637724668944,0.0364791508700876,0.0253568302075752,0.0138258593377233,0.048360620861752,0.0243442052522616,0.0102004583425805,0,0.058614708250051,0.019151611352809,0.0242110490140042,0.0228227723193863,0,0,0.0216425781243506,0 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.578187584577219,0.130378134259189,0,0,0,0.844472782848455,0.714196439187012,0.062432954297476,0.0400380762665588,0,0.143669040685193,0.147573397657905,0,0.0518325320548473,0.0205563265474198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236880264493592,0.263054781809746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0234784353458152,0.368496417890754,0,0.0994178987032863,0,0,0,0,0,0,0.0844866805693339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0254617646470484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239809638088447,0,0,0,0.0296301996785983,0,0,0,0,0,0,0,0,0,0,0,0.0378146482960409,0,0,0.0486868322374133,0,0,0,0,0,0,0,0,0,0,0,0.0133149461563917,0,0.0316664407153844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132575718524345,0,0,0,0,0.0627426684755505,0.0463679768904873,0,0,0,0.120215008744062,0.0329509896628099,0.0990115454436879,0.0293361777120366,0,0,0,0,0.0323320383475661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0499142369709586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342545026818701,0.0407433005351683,0,0.106901036464273,0.055643654597214,0.0894734883806707,0,0,0,0,0,0,0,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251161231671067,0.113990974502719,0.519488048820409,0.586144914153701,0.429327428114337,0.276796971799958,0.317705366388909,0.347316940660972,0.244653858049601,0.206245392135032,0.205463431268847,0.261915016959512,0.290626671486374,0.243272486410025,0,0,0,0,0.0383547285828163,0.0373501741982983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034229042449623,0,0,0,0,0,0,0,0,0,0,0.0134759471663239,0,0,0,0,0,0,0,0,0,0,0,0.017637724668944,0.0364791508700876,0,0,0,0.0243442052522616,0,0,0.058614708250051,0,0,0,0,0,0,0 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0000084!8.24e-07!11;CL:0000827!8.24e-07!11;CL:0000791!8.35e-07!9;CL:0000789!8.35e-07!9;CL:0002420!8.35e-07!9;CL:0002419!8.35e-07!9;CL:0000790!8.35e-07!9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.18e-23!29;UBERON:0005057!1.18e-23!29;UBERON:0000077!3.91e-22!35;UBERON:0002193!4.24e-19!48;UBERON:0002405!4.24e-19!48;UBERON:0002390!5.46e-19!45;UBERON:0003061!5.46e-19!45;UBERON:0002370!7.28e-19!23;UBERON:0000974!7.28e-19!23;UBERON:0004807!7.28e-19!23;UBERON:0005058!7.28e-19!23;UBERON:0003351!7.28e-19!23;UBERON:0009113!7.28e-19!23;UBERON:0003295!7.28e-19!23;UBERON:0009722!7.28e-19!23;UBERON:0005562!7.28e-19!23;UBERON:0007690!7.28e-19!23;UBERON:0000065!6.70e-18!41;UBERON:0006562!7.41e-18!24;UBERON:0003408!7.41e-18!24;UBERON:0001557!7.41e-18!24;UBERON:0001042!7.41e-18!24;UBERON:0008814!7.41e-18!24;UBERON:0009145!7.41e-18!24;UBERON:0001004!2.66e-17!42;UBERON:0000072!2.75e-15!27;UBERON:0000063!6.87e-12!35;UBERON:0001041!1.17e-11!80;UBERON:0007811!3.36e-10!36;UBERON:0003081!5.66e-10!87;UBERON:0005911!1.02e-08!69;UBERON:0000153!9.20e-08!43;UBERON:0004921!1.28e-07!114;UBERON:0001007!2.43e-07!116;UBERON:0001555!2.43e-07!116;UBERON:0007026!2.43e-07!116;UBERON:0004119!4.51e-07!118;UBERON:0000925!4.51e-07!118;UBERON:0006595!4.51e-07!118;UBERON:0000926!8.38e-07!120;UBERON:0004120!8.38e-07!120;UBERON:0006603!8.38e-07!120 | |||
}} | |||
Latest revision as of 17:58, 17 September 2013
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr13:73910344..73910364,+ | p@chr13:73910344..73910364 + |
| Mm9::chr8:15018891..15018906,- | p@chr8:15018891..15018906 - |
| Mm9::chr8:15018922..15018940,- | p@chr8:15018922..15018940 - |
| Mm9::chr9:42236236..42236246,- | p9@Tbcel |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| T cell | 8.24e-07 | 11 |
| pro-T cell | 8.24e-07 | 11 |
| mature alpha-beta T cell | 8.35e-07 | 9 |
| alpha-beta T cell | 8.35e-07 | 9 |
| immature T cell | 8.35e-07 | 9 |
| mature T cell | 8.35e-07 | 9 |
| immature alpha-beta T cell | 8.35e-07 | 9 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.0356887 |
| MA0004.1 | 0.6888 |
| MA0006.1 | 0.497533 |
| MA0007.1 | 0.672186 |
| MA0009.1 | 1.15569 |
| MA0014.1 | 0.0809287 |
| MA0017.1 | 0.528196 |
| MA0019.1 | 0.964875 |
| MA0024.1 | 1.11019 |
| MA0025.1 | 1.39562 |
| MA0027.1 | 2.81824 |
| MA0028.1 | 0.509589 |
| MA0029.1 | 1.08753 |
| MA0030.1 | 1.09438 |
| MA0031.1 | 1.05719 |
| MA0038.1 | 0.846479 |
| MA0040.1 | 1.16866 |
| MA0041.1 | 0.604221 |
| MA0042.1 | 0.589368 |
| MA0043.1 | 1.25564 |
| MA0046.1 | 1.1929 |
| MA0048.1 | 0.266382 |
| MA0050.1 | 0.731539 |
| MA0051.1 | 0.856094 |
| MA0052.1 | 1.17701 |
| MA0055.1 | 0.125758 |
| MA0056.1 | 0 |
| MA0057.1 | 0.251896 |
| MA0058.1 | 0.581673 |
| MA0059.1 | 0.59559 |
| MA0060.1 | 0.403071 |
| MA0061.1 | 0.438628 |
| MA0063.1 | 0 |
| MA0066.1 | 0.834648 |
| MA0067.1 | 1.50873 |
| MA0068.1 | 0.256913 |
| MA0069.1 | 1.17737 |
| MA0070.1 | 1.16732 |
| MA0071.1 | 0.73062 |
| MA0072.1 | 1.15853 |
| MA0073.1 | 0.00221226 |
| MA0074.1 | 0.795862 |
| MA0076.1 | 0.550092 |
| MA0077.1 | 1.13603 |
| MA0078.1 | 0.891476 |
| MA0081.1 | 0.621611 |
| MA0083.1 | 1.25482 |
| MA0084.1 | 1.84013 |
| MA0087.1 | 1.21037 |
| MA0088.1 | 0.582815 |
| MA0089.1 | 0 |
| MA0090.1 | 0.650768 |
| MA0091.1 | 0.703314 |
| MA0092.1 | 0.651119 |
| MA0093.1 | 0.519148 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.783305 |
| MA0101.1 | 0.605676 |
| MA0103.1 | 0.540576 |
| MA0105.1 | 0.313353 |
| MA0106.1 | 0.899777 |
| MA0107.1 | 0.533522 |
| MA0108.2 | 0.989014 |
| MA0109.1 | 0 |
| MA0111.1 | 0.666525 |
| MA0113.1 | 0.869608 |
| MA0114.1 | 0.43587 |
| MA0115.1 | 1.25852 |
| MA0116.1 | 0.497293 |
| MA0117.1 | 1.22527 |
| MA0119.1 | 0.606338 |
| MA0122.1 | 1.24573 |
| MA0124.1 | 1.45461 |
| MA0125.1 | 1.37907 |
| MA0130.1 | 0 |
| MA0131.1 | 0.960068 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.29308 |
| MA0136.1 | 0.817395 |
| MA0139.1 | 0.365453 |
| MA0140.1 | 0.78318 |
| MA0141.1 | 0.563066 |
| MA0142.1 | 1.04199 |
| MA0143.1 | 0.887119 |
| MA0144.1 | 1.11951 |
| MA0145.1 | 0.608454 |
| MA0146.1 | 0.313734 |
| MA0147.1 | 0.453952 |
| MA0148.1 | 0.706718 |
| MA0149.1 | 1.4861 |
| MA0062.2 | 0.319836 |
| MA0035.2 | 0.788288 |
| MA0039.2 | 0.0220513 |
| MA0138.2 | 0.951653 |
| MA0002.2 | 0.368961 |
| MA0137.2 | 1.37638 |
| MA0104.2 | 0.386166 |
| MA0047.2 | 0.845655 |
| MA0112.2 | 0.211985 |
| MA0065.2 | 0.212467 |
| MA0150.1 | 0.67206 |
| MA0151.1 | 0 |
| MA0152.1 | 0.84577 |
| MA0153.1 | 1.31015 |
| MA0154.1 | 0.263609 |
| MA0155.1 | 0.230016 |
| MA0156.1 | 0.549102 |
| MA0157.1 | 1.0083 |
| MA0158.1 | 0 |
| MA0159.1 | 1.1762 |
| MA0160.1 | 0.71003 |
| MA0161.1 | 0 |
| MA0162.1 | 0.10667 |
| MA0163.1 | 0.0996272 |
| MA0164.1 | 0.817786 |
| MA0080.2 | 0.534538 |
| MA0018.2 | 0.828253 |
| MA0099.2 | 0.944966 |
| MA0079.2 | 0.000201415 |
| MA0102.2 | 1.8929 |
| MA0258.1 | 0.419871 |
| MA0259.1 | 0.441366 |
| MA0442.1 | 0 |
