FFCP PHASE1:Mm9::chr3:130815703..130815721,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16842|HGNC=|MCL_coexpression_id=33|UniProt=Q8C402,Q3TEN5|association_with_transcript=0bp_to_ENSMUST00000098611,ENSMUST00000136147,uc008rji.1,uc008rjj.1,uc008rjk.1_5end|description=CAGE_peak_2_at_Lef1_5end|id=chr3:130815703..130815721,+|ontology_enrichment_celltype=CL:0000791!6.58e-08!9;CL:0000789!6.58e-08!9;CL:0002420!6.58e-08!9;CL:0002419!6.58e-08!9;CL:0000790!6.58e-08!9;CL:0000624!3.66e-07!8|ontology_enrichment_celltype_v019_2=CL:0000791,1.35e-12,9;CL:0000789,1.35e-12,9;CL:0002420,1.35e-12,9;CL:0002419,1.35e-12,9;CL:0000790,1.35e-12,9;CL:0000624,2.63e-11,8;CL:0000838,1.07e-10,12;CL:0000084,8.62e-10,11;CL:0000827,8.62e-10,11;CL:0000542,1.25e-09,13;CL:0000051,1.25e-09,13;CL:0002031,5.45e-09,25;CL:0000893,8.23e-09,6;CL:0002489,8.23e-09,6;CL:0000898,8.23e-09,6;CL:0000809,8.23e-09,6;CL:0000810,8.23e-09,6;CL:0000895,8.23e-09,6;CL:0000808,8.23e-09,6;CL:0000894,8.23e-09,6;CL:0000806,8.23e-09,6;CL:0000807,8.23e-09,6;CL:0000805,8.23e-09,6;CL:0002425,8.23e-09,6;CL:0002436,8.23e-09,6;CL:0002427,8.23e-09,6;CL:0002428,8.23e-09,6;CL:0002429,8.23e-09,6;CL:0002433,8.23e-09,6;CL:0002431,8.23e-09,6;CL:0002432,8.23e-09,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.52e-12!29;UBERON:0003408!1.17e-11!24;UBERON:0006562!2.96e-11!24;UBERON:0001557!2.96e-11!24;UBERON:0001042!2.96e-11!24;UBERON:0008814!2.96e-11!24;UBERON:0009145!2.96e-11!24;UBERON:0002370!3.76e-11!23;UBERON:0000974!3.76e-11!23;UBERON:0004807!3.76e-11!23;UBERON:0005058!3.76e-11!23;UBERON:0003351!3.76e-11!23;UBERON:0009113!3.76e-11!23;UBERON:0003295!3.76e-11!23;UBERON:0009722!3.76e-11!23;UBERON:0005562!3.76e-11!23;UBERON:0007690!3.76e-11!23;UBERON:0001004!6.97e-10!42;UBERON:0000065!1.99e-09!41;UBERON:0000072!1.16e-08!27;UBERON:0002193!1.23e-07!48;UBERON:0002390!1.64e-07!45;UBERON:0003061!1.64e-07!45;UBERON:0000063!2.76e-07!35|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.18e-22,29;UBERON:0005057,4.18e-22,29;UBERON:0003408,3.26e-21,24;UBERON:0002370,2.53e-20,23;UBERON:0000974,2.53e-20,23;UBERON:0004807,2.53e-20,23;UBERON:0005058,2.53e-20,23;UBERON:0003351,2.53e-20,23;UBERON:0009113,2.53e-20,23;UBERON:0003295,2.53e-20,23;UBERON:0009722,2.53e-20,23;UBERON:0005562,2.53e-20,23;UBERON:0007690,2.53e-20,23;UBERON:0006562,3.60e-19,24;UBERON:0001557,3.60e-19,24;UBERON:0001042,3.60e-19,24;UBERON:0008814,3.60e-19,24;UBERON:0009145,3.60e-19,24;UBERON:0002390,4.70e-18,45;UBERON:0003061,4.70e-18,45;UBERON:0002193,6.48e-18,48;UBERON:0002405,6.48e-18,48;UBERON:0001004,1.09e-17,42;UBERON:0000065,7.18e-17,41;UBERON:0000077,7.78e-17,35;UBERON:0000072,3.08e-16,27;UBERON:0000153,1.30e-13,43;UBERON:0007811,9.11e-13,36;UBERON:0003081,4.86e-11,87;UBERON:0001041,1.51e-08,80;UBERON:0005911,3.76e-07,69|phase1_expression=1.28119077683835,0,0,0,0,0,0,98.2628491390395,93.6245002308584,140.672780319518,92.2864848735472,53.2878022088847,247.04265329073,252.295281381226,2.99798785634096,6.68168382386426,0,24.1328556499052,23.0352248457641,14.8536378129311,3.82694805679814,0,0,0.47997726838022,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388859798148567,0,0,4.02678254538567,205.27748618921,230.224252412588,0,0,0,1.41621522601718,0.528990979272033,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,3.44755812830007,1.84327839907492,0.923204014111357,0.548925861614458,0.52091337055676,0,0,0.30559649555362,0,0,0,0.075726193333184,0.151143120213571,0,0,0,0,0,0,3.08977724289854,0,0,0,0,0,0,0,0,0,0,1.02765491747154,168.050686487014,0.593768556259299,0.693941307064543,0.304465478312141,0,0,0.117588707135705,0.125666591329675,0,1.87979163995885,0,0.485300549842228,1.54589062922275,0.969750506270444,1.86391761218122,0.585561594023094,0.209446706813455,1.02182822083437,0.11981512450592,0,0,0.449371918214468,0.915001205637253,0.125654352112864,0.347648640384553,0,3.94797284663164,1.29793010454206,0,1.11966273549084,1.51633655060205,0.210441855886474,0.910843100738926,0.229902104433473,0,0,0,0,0,0,1.29340795759705,0.945530400839096,0.527853372491847,1.53437012699302,0.834141747676794,2.089512999133,1.64625709126355,0.199034266818493,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,1.05088808130453,0.16455984991348,1.14917224855367,0.891756905004413,0.584799949701329,0.219550115291051,0.671032093801859,0.210289948564127,0,0.660837565967596,0,0,0,0,0,0,0,0,0.164698954724011,0.502670417600539,0.596869416123452,0.58489226135736,1.79763881730844,0.216138049874694,0,0.758671603812327,0.228497025219458,0,0,0.387904974335251,0.350679099451593,0.189709611372772,0.295220295959204,0.31399745568275,0.123397163921801,0,0,0,0,0,0,0.763877555344259,0.575392274901621,0.162135226775035,0.549122826376163,0,0,0.312037673114561,1.01031551178845,0.358794827043824,0,8.86815312799702,0.37898282354097,0.162964976442026,0,0,2.34508760418542,0,0.195133647857799,1.57635144106191,0.44292937929755,3.34855014180723,5.73521601505083,5.87128938344045,2.89298117163023,0,0,2.95058563811422,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| ||
|EntrezGene=16842 | |||
|HGNC= | |||
|MCL_coexpression_id=33 | |||
|UniProt=Q8C402,Q3TEN5 | |||
|association_with_transcript=0bp_to_ENSMUST00000098611,ENSMUST00000136147,uc008rji.1,uc008rjj.1,uc008rjk.1_5end | |||
|description=CAGE_peak_2_at_Lef1_5end | |||
|id=chr3:130815703..130815721,+ | |||
|ontology_enrichment_celltype=CL:0000791!6.58e-08!9;CL:0000789!6.58e-08!9;CL:0002420!6.58e-08!9;CL:0002419!6.58e-08!9;CL:0000790!6.58e-08!9;CL:0000624!3.66e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.35e-12,9;CL:0000789,1.35e-12,9;CL:0002420,1.35e-12,9;CL:0002419,1.35e-12,9;CL:0000790,1.35e-12,9;CL:0000624,2.63e-11,8;CL:0000838,1.07e-10,12;CL:0000084,8.62e-10,11;CL:0000827,8.62e-10,11;CL:0000542,1.25e-09,13;CL:0000051,1.25e-09,13;CL:0002031,5.45e-09,25;CL:0000893,8.23e-09,6;CL:0002489,8.23e-09,6;CL:0000898,8.23e-09,6;CL:0000809,8.23e-09,6;CL:0000810,8.23e-09,6;CL:0000895,8.23e-09,6;CL:0000808,8.23e-09,6;CL:0000894,8.23e-09,6;CL:0000806,8.23e-09,6;CL:0000807,8.23e-09,6;CL:0000805,8.23e-09,6;CL:0002425,8.23e-09,6;CL:0002436,8.23e-09,6;CL:0002427,8.23e-09,6;CL:0002428,8.23e-09,6;CL:0002429,8.23e-09,6;CL:0002433,8.23e-09,6;CL:0002431,8.23e-09,6;CL:0002432,8.23e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.52e-12!29;UBERON:0003408!1.17e-11!24;UBERON:0006562!2.96e-11!24;UBERON:0001557!2.96e-11!24;UBERON:0001042!2.96e-11!24;UBERON:0008814!2.96e-11!24;UBERON:0009145!2.96e-11!24;UBERON:0002370!3.76e-11!23;UBERON:0000974!3.76e-11!23;UBERON:0004807!3.76e-11!23;UBERON:0005058!3.76e-11!23;UBERON:0003351!3.76e-11!23;UBERON:0009113!3.76e-11!23;UBERON:0003295!3.76e-11!23;UBERON:0009722!3.76e-11!23;UBERON:0005562!3.76e-11!23;UBERON:0007690!3.76e-11!23;UBERON:0001004!6.97e-10!42;UBERON:0000065!1.99e-09!41;UBERON:0000072!1.16e-08!27;UBERON:0002193!1.23e-07!48;UBERON:0002390!1.64e-07!45;UBERON:0003061!1.64e-07!45;UBERON:0000063!2.76e-07!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.18e-22,29;UBERON:0005057,4.18e-22,29;UBERON:0003408,3.26e-21,24;UBERON:0002370,2.53e-20,23;UBERON:0000974,2.53e-20,23;UBERON:0004807,2.53e-20,23;UBERON:0005058,2.53e-20,23;UBERON:0003351,2.53e-20,23;UBERON:0009113,2.53e-20,23;UBERON:0003295,2.53e-20,23;UBERON:0009722,2.53e-20,23;UBERON:0005562,2.53e-20,23;UBERON:0007690,2.53e-20,23;UBERON:0006562,3.60e-19,24;UBERON:0001557,3.60e-19,24;UBERON:0001042,3.60e-19,24;UBERON:0008814,3.60e-19,24;UBERON:0009145,3.60e-19,24;UBERON:0002390,4.70e-18,45;UBERON:0003061,4.70e-18,45;UBERON:0002193,6.48e-18,48;UBERON:0002405,6.48e-18,48;UBERON:0001004,1.09e-17,42;UBERON:0000065,7.18e-17,41;UBERON:0000077,7.78e-17,35;UBERON:0000072,3.08e-16,27;UBERON:0000153,1.30e-13,43;UBERON:0007811,9.11e-13,36;UBERON:0003081,4.86e-11,87;UBERON:0001041,1.51e-08,80;UBERON:0005911,3.76e-07,69 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0,0,98.2628491390395,93.6245002308584,140.672780319518,92.2864848735472,53.2878022088847,247.04265329073,252.295281381226,2.99798785634096,6.68168382386426,0,24.1328556499052,23.0352248457641,14.8536378129311,3.82694805679814,0,0,0.47997726838022,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388859798148567,0,0,4.02678254538567,205.27748618921,230.224252412588,0,0,0,1.41621522601718,0.528990979272033,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,3.44755812830007,1.84327839907492,0.923204014111357,0.548925861614458,0.52091337055676,0,0,0.30559649555362,0,0,0,0.075726193333184,0.151143120213571,0,0,0,0,0,0,3.08977724289854,0,0,0,0,0,0,0,0,0,0,1.02765491747154,168.050686487014,0.593768556259299,0.693941307064543,0.304465478312141,0,0,0.117588707135705,0.125666591329675,0,1.87979163995885,0,0.485300549842228,1.54589062922275,0.969750506270444,1.86391761218122,0.585561594023094,0.209446706813455,1.02182822083437,0.11981512450592,0,0,0.449371918214468,0.915001205637253,0.125654352112864,0.347648640384553,0,3.94797284663164,1.29793010454206,0,1.11966273549084,1.51633655060205,0.210441855886474,0.910843100738926,0.229902104433473,0,0,0,0,0,0,1.29340795759705,0.945530400839096,0.527853372491847,1.53437012699302,0.834141747676794,2.089512999133,1.64625709126355,0.199034266818493,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,1.05088808130453,0.16455984991348,1.14917224855367,0.891756905004413,0.584799949701329,0.219550115291051,0.671032093801859,0.210289948564127,0,0.660837565967596,0,0,0,0,0,0,0,0,0.164698954724011,0.502670417600539,0.596869416123452,0.58489226135736,1.79763881730844,0.216138049874694,0,0.758671603812327,0.228497025219458,0,0,0.387904974335251,0.350679099451593,0.189709611372772,0.295220295959204,0.31399745568275,0.123397163921801,0,0,0,0,0,0,0.763877555344259,0.575392274901621,0.162135226775035,0.549122826376163,0,0,0.312037673114561,1.01031551178845,0.358794827043824,0,8.86815312799702,0.37898282354097,0.162964976442026,0,0,2.34508760418542,0,0.195133647857799,1.57635144106191,0.44292937929755,3.34855014180723,5.73521601505083,5.87128938344045,2.89298117163023,0,0,2.95058563811422,3.03530420935206,0.321101179975584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0.325773918707152,0.659880491890142,2.65490276679926,0,0,0,0,0.307435147943927,0,0.363533729477506,0.712994756769443,1.8962205476149,1.05418608574999,0,0,0.36012218806262,0.388076051348264,0.214337035031592,0.354680467284547,0,0,0,0.704015124191131,0.21183207086382,0.220528398054962,0.8244312647074,0.807322133479528,1.74907482291652,2.86493625607528,3.77524069413641,1.7488850197791,0.556275906031529,14.5240248678175,0,0.370389054739423,4.52084296811258,11.7557035840082,8.69357058184786,0.169978429993855,0.139951452323658,0.276399947608848,0.954670618015114,0,0,0,0,0,0,0.0826534557253359,0.26175594198403,0.518459893167171,3.10669656543463,0,0.149516546043979,0.330916980914195,0.388902376688095,0.258319646955462,0.168956125490778,0,0.2604087696879,0.314578033277133,0.241584120826006,0.288030006257865,96.3833917915944,2.43270258348197,21.6720119617786,54.8265872966295,73.9380253106698,94.3736435211008,75.8433286471003,74.7309007503361,84.811817956444,58.6792411243499,83.9882122189882,102.42823265748,72.0626693886068,77.1387554398355,0.680191150845634,0,0,0,0.386379188064381,0.563047426353546,0,0,0,0,0,0,0.171853182343688,0,0,1.35004500046361,0,0,0.51776031175182,0.726511433089237,1.19707462020309,0.682934423016537,2.43106717068294,0.419226325255965,0.183843508450014,1.11123363900808,0.206035057238894,0.320919209591815,1.01078884705519,0.50695859978048,0.377252682772152,0.37456602987953,0.384150914429216,0.402048282689293,0.952587382566147,0.695305955669133,0.77163688185482,0,0.883193520806384,0.342869252385415,0.887379030796687,0.476872379894642,0.581385666529314,0.282328141245992,0.338458431566706,0.914639864363863,2.36762740294059,0.135804113845862,0.561142271657738,0.593175090620871,0.492522411877817,1.63692417267876,0.619747364743864,0.578719832943424,0.749431733813838,1.16965804222704,1.50409737833809,0,1.10295709559758,0.927471342481686 | |||
|short_description=p2@Lef1 | |||
}} |
Revision as of 01:32, 14 September 2013
Short description: | p2@Lef1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lef1_5end |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | 0bp_to_ENSMUST00000098611, ENSMUST00000136147, uc008rji.1, uc008rjj.1, uc008rjk.1_5end |
EntrezGene: | Lef1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 4.18e-22 | 29 |
immune organ | 4.18e-22 | 29 |
gland of gut | 3.26e-21 | 24 |
thymus | 2.53e-20 | 23 |
neck | 2.53e-20 | 23 |
respiratory system epithelium | 2.53e-20 | 23 |
hemolymphoid system gland | 2.53e-20 | 23 |
pharyngeal epithelium | 2.53e-20 | 23 |
thymic region | 2.53e-20 | 23 |
pharyngeal gland | 2.53e-20 | 23 |
entire pharyngeal arch endoderm | 2.53e-20 | 23 |
thymus primordium | 2.53e-20 | 23 |
early pharyngeal endoderm | 2.53e-20 | 23 |
pharynx | 3.60e-19 | 24 |
upper respiratory tract | 3.60e-19 | 24 |
chordate pharynx | 3.60e-19 | 24 |
pharyngeal arch system | 3.60e-19 | 24 |
pharyngeal region of foregut | 3.60e-19 | 24 |
hematopoietic system | 4.70e-18 | 45 |
blood island | 4.70e-18 | 45 |
hemolymphoid system | 6.48e-18 | 48 |
immune system | 6.48e-18 | 48 |
respiratory system | 1.09e-17 | 42 |
respiratory tract | 7.18e-17 | 41 |
mixed endoderm/mesoderm-derived structure | 7.78e-17 | 35 |
segment of respiratory tract | 3.08e-16 | 27 |
anterior region of body | 1.30e-13 | 43 |
craniocervical region | 9.11e-13 | 36 |
lateral plate mesoderm | 4.86e-11 | 87 |
foregut | 1.51e-08 | 80 |
endo-epithelium | 3.76e-07 | 69 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.