FFCP PHASE1:Mm9::chr2:91023998..91024056,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=228355|HGNC=|MCL_coexpression_id=40|UniProt=A2AGQ4,Q80U28,A2AGQ5,A2AGQ7,A2AGQ9,A2AGQ2,Q99LH6|association_with_transcript=0bp_to_NM_001177721,NM_001177722,NM_001177723,NM_001177724,NM_001177725,NM_001177726,NM_001177727,NM_001177728,NM_001177729,uc008kuv.2,uc008kuw.2,uc008kux.2,uc008kuy.2,uc008kuz.2,uc008kvb.2,uc012bzd.1,uc012bze.1,uc012bzf.1,uc012bzg.1_5end|description=CAGE_peak_4_at_Madd_5end|id=chr2:91023998..91024056,-|ontology_enrichment_celltype=CL:0000988!4.59e-11!32;CL:0002032!4.59e-11!32;CL:0000037!4.59e-11!32;CL:0000566!4.59e-11!32;CL:0000837!4.59e-11!32;CL:0002031!2.43e-08!25;CL:0000738!4.35e-08!17;CL:0002087!4.35e-08!17;CL:0000838!4.35e-07!12;CL:0002320!7.32e-07!46;CL:0000134!7.32e-07!46|ontology_enrichment_celltype_v019_2=CL:0000988,5.91e-16,32;CL:0002032,5.91e-16,32;CL:0000037,5.91e-16,32;CL:0000837,5.91e-16,32;CL:0002320,6.88e-13,46;CL:0000134,6.88e-13,46;CL:0002031,1.05e-11,25;CL:0000738,6.57e-10,17;CL:0002087,6.57e-10,17;CL:0000219,1.40e-09,54;CL:0000838,2.14e-09,12;CL:0000049,9.08e-09,19;CL:0000542,2.03e-08,13;CL:0000051,2.03e-08,13;CL:0000084,2.22e-08,11;CL:0000827,2.22e-08,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.06e-17!70;UBERON:0002193!1.39e-16!48;UBERON:0002390!1.61e-16!45;UBERON:0003061!1.61e-16!45;UBERON:0003081!1.02e-12!88;UBERON:0000926!1.25e-12!193;UBERON:0004120!1.25e-12!193;UBERON:0006603!1.25e-12!193;UBERON:0001041!1.90e-10!92;UBERON:0000077!1.93e-10!97;UBERON:0005057!1.28e-09!51;UBERON:0002371!4.74e-09!16;UBERON:0001474!9.20e-09!22;UBERON:0004765!9.20e-09!22;UBERON:0001434!9.20e-09!22;UBERON:0004177!1.06e-08!29;UBERON:0001004!2.41e-07!42;UBERON:0003104!4.84e-07!131;UBERON:0009142!4.84e-07!131;UBERON:0000065!5.27e-07!41;UBERON:0002384!7.32e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.65e-24,45;UBERON:0003061,6.65e-24,45;UBERON:0002193,2.06e-23,48;UBERON:0002405,2.06e-23,48;UBERON:0003081,2.33e-13,87;UBERON:0004177,3.55e-13,29;UBERON:0005057,3.55e-13,29;UBERON:0002384,6.88e-13,46;UBERON:0001041,1.04e-12,80;UBERON:0001474,4.64e-12,22;UBERON:0004765,4.64e-12,22;UBERON:0001434,4.64e-12,22;UBERON:0002371,1.65e-11,16;UBERON:0000077,1.38e-10,35;UBERON:0002204,1.76e-10,32;UBERON:0003408,2.66e-09,24;UBERON:0001004,4.94e-09,42;UBERON:0002370,1.01e-08,23;UBERON:0000974,1.01e-08,23;UBERON:0004807,1.01e-08,23;UBERON:0005058,1.01e-08,23;UBERON:0003351,1.01e-08,23;UBERON:0009113,1.01e-08,23;UBERON:0003295,1.01e-08,23;UBERON:0009722,1.01e-08,23;UBERON:0005562,1.01e-08,23;UBERON:0007690,1.01e-08,23;UBERON:0005911,1.35e-08,69;UBERON:0000065,1.61e-08,41;UBERON:0000926,3.65e-08,120;UBERON:0004120,3.65e-08,120;UBERON:0006603,3.65e-08,120;UBERON:0006562,3.77e-08,24;UBERON:0001557,3.77e-08,24;UBERON:0001042,3.77e-08,24;UBERON:0008814,3.77e-08,24;UBERON:0009145,3.77e-08,24|phase1_expression=0.160148847104794,0,0,0,0,0.33575854382378,0.233612640595526,8.39301602370246,5.63154888606667,3.97909694747389,0.856089841127525,0.159544317990673,28.5905218985114,36.4543078087219,2.6648780945253,2.83465374345756,0.699561878128147,6.62470547252299,8.77532375076728,5.51706547337439,0.850432901510698,8.43973085207525,3.6567970479451,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0,0,0.443461021310609,0,0,0,0.288851619751275,0,0,2.51118978442145,3.1253413780952,2.61761871986899,0,0,0,0,0,0,0,0,0,0,0,0,7.04686945442493,19.5847778343063,27.2235977305396,0,0,0,0,0,0,0,0,5.84934816232909,6.92206453796882,4.9733608046227,1.49800055259202,0.768436610643109,0,0,0.210324961351382,0,0.220868540951614,0,0,0,0,0.127687338085188,0.307213066512487,0.263772575460388,0,0,0,0.56276261003168,0,0.294628585473668,0.142371680799103,0,0.151452386666368,0.0755715601067855,1.44932244350839,0,0,0,0.649776417447669,0,1.68533304158102,0,0,0,0,0,0,0,0.432982082022428,0,0.505524445014783,1.02765491747154,16.8309624370662,0.148442139064825,0,0,0.230615497256059,0,0.23517741427141,0.125666591329675,0,2.74738778147832,4.42305275974937,1.29413479957927,3.3126227769059,1.45462575940567,0,0,0.628340120440365,0,7.54835284387298,3.59941638596045,4.3203877204842,0.299581278809645,0.457500602818626,0,0,0,0.62336413367868,0.162241263067758,0.407357455401265,2.36373244159177,0.505445516867349,5.05060454127538,0.260240885925407,0,0.180062129805349,0.452114453507145,0.0680364991513279,0.12811372028485,0.0937017245597288,2.84573707812917,0.215567992932842,0.378212160335639,0.175951124163949,0.219195732427575,0.278047249225598,1.0447564995665,0.823128545631774,0.398068533636986,6.31991868581911,3.08817488537658,3.6941254921427,0.828503090142008,0.703578179943289,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0.32833492815819,0.243206428637567,0.730999937126662,1.53685080703735,0.939444931322602,0.630869845692382,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0.474529061544512,0.329397909448022,0.754005626400808,0.596869416123452,0.38992817423824,0.898819408654221,0,0.597423819763102,0.189667900953082,0.114248512609729,1.1270773567308,0.203651327845314,0,0.140271639780637,0.379419222745544,0.295220295959204,0.156998727841375,0.246794327843601,1.48226313543574,2.33583148002532,2.55526693647164,0.674586337154561,1.42002084971952,2.17059443777175,2.03700681425136,2.01387296215567,1.62135226775035,1.64736847912849,2.87536413054709,1.48856379067401,0.624075346229121,0.505157755894224,0.717589654087649,0,5.17308932466493,0.189491411770485,0.488894929326078,0,0.234690248288502,0.335012514883631,0.238043640886014,1.17080188714679,1.57635144106191,1.55025282754142,2.87018583583477,3.4411296090305,4.48980952851328,2.89298117163023,10.5553898757491,5.4390568381871,0.491764273019036,1.93155722413313,0.481651769963376,0.234423373184406,0,1.51482556322624,0,0,0,0,0,0,0,0,0,0,0.709700426041343,0.178065603667255,0.162886959353576,1.31976098378028,1.32745138339963,0.242780636154981,0.604647113929502,0,0,0.307435147943927,0.516856586336442,0.363533729477506,0,1.26414703174326,0,2.06271086496374,0.340439605753788,0.36012218806262,0.129358683782755,0.428674070063185,0,0,0,0.913394847343798,0.469343416127421,0.42366414172764,0.220528398054962,1.15420377059036,0.322928853391811,0.361877549568935,0.358117032009409,0.656563598980245,0.582961673259701,0.927126510052548,5.80960994712699,2.27025554759545,2.96311243791539,4.70921142511728,4.64760374251486,3.66045077130436,5.60928818979723,5.17820373597535,3.59319931891502,1.90934123603023,0.158167996790568,0,0.432021363287205,0.209088296014469,0.655087691238533,0.809186078308924,0.826534557253359,1.04702376793612,0.518459893167171,2.4853572523477,0,0,0,0,0.387479470433193,0,0.117357238645754,0.2604087696879,0.419437377702843,0,0,4.74016680942267,1.01362607645082,0.821687657318618,1.29920822977795,1.43221356533985,2.18549490259391,3.96644983415897,2.06765338044408,2.72609414859999,1.98137697303,2.01652370273681,3.80085734885034,6.06134602334076,4.9088298916259,0.680191150845634,0,0,0,0.772758376128762,0.563047426353546,0.915758121336325,0.214368379079066,0,0,1.38097570952153,0,0.171853182343688,0,0,0,0.45032120322422,0.453142408984205,0,0,0,0.170733605754134,0,0.628839487883947,0.183843508450014,0.222246727801615,0.206035057238894,0.962757628775446,0.505394423527595,0.25347929989024,0,0.187283014939765,0.384150914429216,0.459483751644906,0,0.347652977834566,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.581385666529314,0.188218760830661,0.25384382367503,0.365855945745545,0.526139422875686,0.407412341537585,0.561142271657738,0.474540072496697,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0.701794825336225,0.429742108096597,0.191288332068843,1.32354851471709,1.15933917810211|short_description=p4@Madd}} | ||
|EntrezGene=228355 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|UniProt=A2AGQ4,Q80U28,A2AGQ5,A2AGQ7,A2AGQ9,A2AGQ2,Q99LH6 | |||
|association_with_transcript=0bp_to_NM_001177721,NM_001177722,NM_001177723,NM_001177724,NM_001177725,NM_001177726,NM_001177727,NM_001177728,NM_001177729,uc008kuv.2,uc008kuw.2,uc008kux.2,uc008kuy.2,uc008kuz.2,uc008kvb.2,uc012bzd.1,uc012bze.1,uc012bzf.1,uc012bzg.1_5end | |||
|description=CAGE_peak_4_at_Madd_5end | |||
|id=chr2:91023998..91024056,- | |||
|ontology_enrichment_celltype=CL:0000988!4.59e-11!32;CL:0002032!4.59e-11!32;CL:0000037!4.59e-11!32;CL:0000566!4.59e-11!32;CL:0000837!4.59e-11!32;CL:0002031!2.43e-08!25;CL:0000738!4.35e-08!17;CL:0002087!4.35e-08!17;CL:0000838!4.35e-07!12;CL:0002320!7.32e-07!46;CL:0000134!7.32e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.91e-16,32;CL:0002032,5.91e-16,32;CL:0000037,5.91e-16,32;CL:0000837,5.91e-16,32;CL:0002320,6.88e-13,46;CL:0000134,6.88e-13,46;CL:0002031,1.05e-11,25;CL:0000738,6.57e-10,17;CL:0002087,6.57e-10,17;CL:0000219,1.40e-09,54;CL:0000838,2.14e-09,12;CL:0000049,9.08e-09,19;CL:0000542,2.03e-08,13;CL:0000051,2.03e-08,13;CL:0000084,2.22e-08,11;CL:0000827,2.22e-08,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.06e-17!70;UBERON:0002193!1.39e-16!48;UBERON:0002390!1.61e-16!45;UBERON:0003061!1.61e-16!45;UBERON:0003081!1.02e-12!88;UBERON:0000926!1.25e-12!193;UBERON:0004120!1.25e-12!193;UBERON:0006603!1.25e-12!193;UBERON:0001041!1.90e-10!92;UBERON:0000077!1.93e-10!97;UBERON:0005057!1.28e-09!51;UBERON:0002371!4.74e-09!16;UBERON:0001474!9.20e-09!22;UBERON:0004765!9.20e-09!22;UBERON:0001434!9.20e-09!22;UBERON:0004177!1.06e-08!29;UBERON:0001004!2.41e-07!42;UBERON:0003104!4.84e-07!131;UBERON:0009142!4.84e-07!131;UBERON:0000065!5.27e-07!41;UBERON:0002384!7.32e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.65e-24,45;UBERON:0003061,6.65e-24,45;UBERON:0002193,2.06e-23,48;UBERON:0002405,2.06e-23,48;UBERON:0003081,2.33e-13,87;UBERON:0004177,3.55e-13,29;UBERON:0005057,3.55e-13,29;UBERON:0002384,6.88e-13,46;UBERON:0001041,1.04e-12,80;UBERON:0001474,4.64e-12,22;UBERON:0004765,4.64e-12,22;UBERON:0001434,4.64e-12,22;UBERON:0002371,1.65e-11,16;UBERON:0000077,1.38e-10,35;UBERON:0002204,1.76e-10,32;UBERON:0003408,2.66e-09,24;UBERON:0001004,4.94e-09,42;UBERON:0002370,1.01e-08,23;UBERON:0000974,1.01e-08,23;UBERON:0004807,1.01e-08,23;UBERON:0005058,1.01e-08,23;UBERON:0003351,1.01e-08,23;UBERON:0009113,1.01e-08,23;UBERON:0003295,1.01e-08,23;UBERON:0009722,1.01e-08,23;UBERON:0005562,1.01e-08,23;UBERON:0007690,1.01e-08,23;UBERON:0005911,1.35e-08,69;UBERON:0000065,1.61e-08,41;UBERON:0000926,3.65e-08,120;UBERON:0004120,3.65e-08,120;UBERON:0006603,3.65e-08,120;UBERON:0006562,3.77e-08,24;UBERON:0001557,3.77e-08,24;UBERON:0001042,3.77e-08,24;UBERON:0008814,3.77e-08,24;UBERON:0009145,3.77e-08,24 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.33575854382378,0.233612640595526,8.39301602370246,5.63154888606667,3.97909694747389,0.856089841127525,0.159544317990673,28.5905218985114,36.4543078087219,2.6648780945253,2.83465374345756,0.699561878128147,6.62470547252299,8.77532375076728,5.51706547337439,0.850432901510698,8.43973085207525,3.6567970479451,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0,0,0.443461021310609,0,0,0,0.288851619751275,0,0,2.51118978442145,3.1253413780952,2.61761871986899,0,0,0,0,0,0,0,0,0,0,0,0,7.04686945442493,19.5847778343063,27.2235977305396,0,0,0,0,0,0,0,0,5.84934816232909,6.92206453796882,4.9733608046227,1.49800055259202,0.768436610643109,0,0,0.210324961351382,0,0.220868540951614,0,0,0,0,0.127687338085188,0.307213066512487,0.263772575460388,0,0,0,0.56276261003168,0,0.294628585473668,0.142371680799103,0,0.151452386666368,0.0755715601067855,1.44932244350839,0,0,0,0.649776417447669,0,1.68533304158102,0,0,0,0,0,0,0,0.432982082022428,0,0.505524445014783,1.02765491747154,16.8309624370662,0.148442139064825,0,0,0.230615497256059,0,0.23517741427141,0.125666591329675,0,2.74738778147832,4.42305275974937,1.29413479957927,3.3126227769059,1.45462575940567,0,0,0.628340120440365,0,7.54835284387298,3.59941638596045,4.3203877204842,0.299581278809645,0.457500602818626,0,0,0,0.62336413367868,0.162241263067758,0.407357455401265,2.36373244159177,0.505445516867349,5.05060454127538,0.260240885925407,0,0.180062129805349,0.452114453507145,0.0680364991513279,0.12811372028485,0.0937017245597288,2.84573707812917,0.215567992932842,0.378212160335639,0.175951124163949,0.219195732427575,0.278047249225598,1.0447564995665,0.823128545631774,0.398068533636986,6.31991868581911,3.08817488537658,3.6941254921427,0.828503090142008,0.703578179943289,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0.32833492815819,0.243206428637567,0.730999937126662,1.53685080703735,0.939444931322602,0.630869845692382,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0.474529061544512,0.329397909448022,0.754005626400808,0.596869416123452,0.38992817423824,0.898819408654221,0,0.597423819763102,0.189667900953082,0.114248512609729,1.1270773567308,0.203651327845314,0,0.140271639780637,0.379419222745544,0.295220295959204,0.156998727841375,0.246794327843601,1.48226313543574,2.33583148002532,2.55526693647164,0.674586337154561,1.42002084971952,2.17059443777175,2.03700681425136,2.01387296215567,1.62135226775035,1.64736847912849,2.87536413054709,1.48856379067401,0.624075346229121,0.505157755894224,0.717589654087649,0,5.17308932466493,0.189491411770485,0.488894929326078,0,0.234690248288502,0.335012514883631,0.238043640886014,1.17080188714679,1.57635144106191,1.55025282754142,2.87018583583477,3.4411296090305,4.48980952851328,2.89298117163023,10.5553898757491,5.4390568381871,0.491764273019036,1.93155722413313,0.481651769963376,0.234423373184406,0,1.51482556322624,0,0,0,0,0,0,0,0,0,0,0.709700426041343,0.178065603667255,0.162886959353576,1.31976098378028,1.32745138339963,0.242780636154981,0.604647113929502,0,0,0.307435147943927,0.516856586336442,0.363533729477506,0,1.26414703174326,0,2.06271086496374,0.340439605753788,0.36012218806262,0.129358683782755,0.428674070063185,0,0,0,0.913394847343798,0.469343416127421,0.42366414172764,0.220528398054962,1.15420377059036,0.322928853391811,0.361877549568935,0.358117032009409,0.656563598980245,0.582961673259701,0.927126510052548,5.80960994712699,2.27025554759545,2.96311243791539,4.70921142511728,4.64760374251486,3.66045077130436,5.60928818979723,5.17820373597535,3.59319931891502,1.90934123603023,0.158167996790568,0,0.432021363287205,0.209088296014469,0.655087691238533,0.809186078308924,0.826534557253359,1.04702376793612,0.518459893167171,2.4853572523477,0,0,0,0,0.387479470433193,0,0.117357238645754,0.2604087696879,0.419437377702843,0,0,4.74016680942267,1.01362607645082,0.821687657318618,1.29920822977795,1.43221356533985,2.18549490259391,3.96644983415897,2.06765338044408,2.72609414859999,1.98137697303,2.01652370273681,3.80085734885034,6.06134602334076,4.9088298916259,0.680191150845634,0,0,0,0.772758376128762,0.563047426353546,0.915758121336325,0.214368379079066,0,0,1.38097570952153,0,0.171853182343688,0,0,0,0.45032120322422,0.453142408984205,0,0,0,0.170733605754134,0,0.628839487883947,0.183843508450014,0.222246727801615,0.206035057238894,0.962757628775446,0.505394423527595,0.25347929989024,0,0.187283014939765,0.384150914429216,0.459483751644906,0,0.347652977834566,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.581385666529314,0.188218760830661,0.25384382367503,0.365855945745545,0.526139422875686,0.407412341537585,0.561142271657738,0.474540072496697,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0.701794825336225,0.429742108096597,0.191288332068843,1.32354851471709,1.15933917810211 | |||
|short_description=p4@Madd | |||
}} |
Revision as of 00:51, 14 September 2013
Short description: | p4@Madd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Madd_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | 0bp_to_NM_001177721, NM_001177722, NM_001177723, NM_001177724, NM_001177725, NM_001177726, NM_001177727, NM_001177728, NM_001177729, uc008kuv.2, uc008kuw.2, uc008kux.2, uc008kuy.2, uc008kuz.2, uc008kvb.2, uc012bzd.1, uc012bze.1, uc012bzf.1, uc012bzg.1_5end |
EntrezGene: | Madd |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.91e-16 | 32 |
hematopoietic oligopotent progenitor cell | 5.91e-16 | 32 |
hematopoietic stem cell | 5.91e-16 | 32 |
hematopoietic multipotent progenitor cell | 5.91e-16 | 32 |
connective tissue cell | 6.88e-13 | 46 |
mesenchymal cell | 6.88e-13 | 46 |
hematopoietic lineage restricted progenitor cell | 1.05e-11 | 25 |
leukocyte | 6.57e-10 | 17 |
nongranular leukocyte | 6.57e-10 | 17 |
motile cell | 1.40e-09 | 54 |
lymphoid lineage restricted progenitor cell | 2.14e-09 | 12 |
common myeloid progenitor | 9.08e-09 | 19 |
lymphocyte | 2.03e-08 | 13 |
common lymphoid progenitor | 2.03e-08 | 13 |
T cell | 2.22e-08 | 11 |
pro-T cell | 2.22e-08 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.