FFCP PHASE1:Hg19::chr7:20371123..20371138,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3696|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6163|TSSclassifier=W|UniProt=P26012|association_with_transcript=377bp_to_ENST00000222573_5end|coexpression_cluster_id=C4673|description=CAGE_peak_17_at_ITGB8_5end|id=chr7:20371123..20371138,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002605;4.15e-12;3!CL:0000128;7.84e-09;7!CL:0000126;7.84e-09;7!CL:0000127;7.84e-09;7!CL:0000047;1.41e-08;2!CL:0002319;2.16e-07;25|ontology_enrichment_celltype_v019_2=CL:0002605,4.18e-12,3;CL:0000128,8.20e-09,7;CL:0000126,8.20e-09,7;CL:0000127,8.20e-09,7;CL:0002453,8.20e-09,7;CL:0002319,2.20e-07,25;CL:0000047,2.63e-07,8|ontology_enrichment_development_v019=UBERON:0006601;4.54e-16;82!UBERON:0006241;1.40e-11;3!UBERON:0003057;1.40e-11;3!UBERON:0010122;1.06e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!3.02e-53!86;UBERON:0001017!8.18e-53!82;UBERON:0000073!1.60e-52!94;UBERON:0001016!1.60e-52!94;UBERON:0001049!1.23e-50!57;UBERON:0005068!1.23e-50!57;UBERON:0006241!1.23e-50!57;UBERON:0007135!1.23e-50!57;UBERON:0000955!2.75e-42!69;UBERON:0006238!2.75e-42!69;UBERON:0002616!2.49e-41!59;UBERON:0003075!3.50e-40!86;UBERON:0007284!3.50e-40!86;UBERON:0002780!1.20e-38!41;UBERON:0001890!1.20e-38!41;UBERON:0006240!1.20e-38!41;UBERON:0001893!1.26e-37!34;UBERON:0002020!1.32e-37!34;UBERON:0003528!1.32e-37!34;UBERON:0002346!1.83e-37!90;UBERON:0003080!2.09e-37!42;UBERON:0002791!2.11e-36!33;UBERON:0001869!7.74e-35!32;UBERON:0003056!5.33e-29!61;UBERON:0004121!1.95e-28!169;UBERON:0000033!3.06e-27!123;UBERON:0000924!3.41e-27!173;UBERON:0006601!3.41e-27!173;UBERON:0000153!5.84e-27!129;UBERON:0007811!5.84e-27!129;UBERON:0000956!1.93e-26!25;UBERON:0000203!1.93e-26!25;UBERON:0007023!6.17e-26!115;UBERON:0002619!1.68e-22!22;UBERON:0001950!3.29e-20!20;UBERON:0003076!6.55e-14!15;UBERON:0003057!6.55e-14!15;UBERON:0002308!1.36e-12!9;UBERON:0000125!1.36e-12!9;UBERON:0004732!1.29e-11!13;UBERON:0000025!7.96e-11!194;UBERON:0004733!2.56e-10!12;UBERON:0002028!2.56e-10!12;UBERON:0007277!2.56e-10!12;UBERON:0009663!4.49e-10!7;UBERON:0002420!8.89e-10!9;UBERON:0007245!8.89e-10!9;UBERON:0010009!8.89e-10!9;UBERON:0010011!8.89e-10!9;UBERON:0000454!8.89e-10!9;UBERON:0004111!1.38e-09!241;UBERON:0002298!4.57e-09!8;UBERON:0000922!5.76e-09!612;UBERON:0000200!1.08e-08!6;UBERON:0000064!2.40e-08!219;UBERON:0000467!1.65e-07!625;UBERON:0002021!1.89e-07!5;UBERON:0000480!1.94e-07!626;UBERON:0002050!2.37e-07!605;UBERON:0005423!2.37e-07!605;UBERON:0000468!3.39e-07!659;UBERON:0000923!5.07e-07!604;UBERON:0005291!5.07e-07!604;UBERON:0006598!5.07e-07!604;UBERON:0002532!5.07e-07!604;UBERON:0000477!5.46e-07!286;UBERON:0001872!7.51e-07!5;UBERON:0002680!8.97e-07!9;UBERON:0001895!8.97e-07!9;UBERON:0010092!8.97e-07!9|ontology_enrichment_uberon_v019=UBERON:0001893;2.88e-56;34!UBERON:0003528;4.16e-54;34!UBERON:0002020;4.16e-54;34!UBERON:0002791;1.24e-53;32!UBERON:0001869;2.65e-52;32!UBERON:0002780;1.12e-47;41!UBERON:0001890;1.12e-47;41!UBERON:0000073;3.14e-47;53!UBERON:0002616;3.14e-47;53!UBERON:0000956;3.31e-39;25!UBERON:0000203;3.31e-39;25!UBERON:0001017;5.64e-33;75!UBERON:0002619;3.68e-30;22!UBERON:0000125;1.21e-29;9!UBERON:0002308;1.21e-29;9!UBERON:0001950;9.04e-29;20!UBERON:0001016;1.31e-28;83!UBERON:0000955;9.79e-28;68!UBERON:0009663;2.67e-23;7!UBERON:0002420;3.13e-23;9!UBERON:0007245;3.13e-23;9!UBERON:0010009;3.13e-23;9!UBERON:0010011;3.13e-23;9!UBERON:0000454;3.13e-23;9!UBERON:0002298;9.48e-21;6!UBERON:0000200;1.02e-19;6!UBERON:0004732;2.61e-16;13!UBERON:0000369;1.00e-13;4!UBERON:0002435;1.00e-13;4!UBERON:0000204;1.00e-13;4!UBERON:0004733;1.96e-13;12!UBERON:0002028;1.96e-13;12!UBERON:0007023;2.06e-13;114!UBERON:0002240;1.40e-11;3!UBERON:0005174;1.40e-11;3!UBERON:0001137;1.40e-11;3!UBERON:0002021;1.51e-11;5!UBERON:0001896;2.03e-11;3!UBERON:0005290;2.03e-11;3!UBERON:0000988;4.57e-11;3!UBERON:0001870;4.57e-11;3!UBERON:0005383;1.01e-10;3!UBERON:0005382;1.01e-10;3!UBERON:0011216;2.87e-10;132!UBERON:0005162;7.21e-09;2!UBERON:0000122;7.21e-09;2!UBERON:0001897;8.06e-09;2!UBERON:0010225;8.06e-09;2!UBERON:0002148;4.73e-08;2!UBERON:0006331;4.73e-08;2!UBERON:0009662;4.73e-08;2!UBERON:0002771;1.06e-07;2!UBERON:0001873;1.06e-07;2!UBERON:0002702;1.06e-07;2!UBERON:0001875;1.06e-07;2!UBERON:0006514;1.06e-07;2!UBERON:0010314;7.52e-07;132!UBERON:0000349;8.39e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.15e-90,56;UBERON:0005068,1.15e-90,56;UBERON:0006241,1.15e-90,56;UBERON:0007135,1.15e-90,56;UBERON:0001017,1.28e-84,81;UBERON:0000073,2.56e-81,53;UBERON:0002616,2.56e-81,53;UBERON:0001016,4.01e-79,89;UBERON:0003075,8.02e-70,82;UBERON:0007284,8.02e-70,82;UBERON:0002780,2.30e-68,41;UBERON:0001890,2.30e-68,41;UBERON:0003080,2.30e-68,41;UBERON:0006240,2.30e-68,41;UBERON:0000955,3.73e-68,68;UBERON:0006238,3.73e-68,68;UBERON:0001893,3.49e-66,34;UBERON:0002346,3.86e-66,86;UBERON:0003528,3.89e-66,34;UBERON:0002020,3.89e-66,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3696 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6163 | |||
|TSSclassifier=W | |||
|UniProt=P26012 | |||
|association_with_transcript=377bp_to_ENST00000222573_5end | |||
|coexpression_cluster_id=C4673 | |||
|description=CAGE_peak_17_at_ITGB8_5end | |||
|id=chr7:20371123..20371138,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002605;4.15e-12;3!CL:0000128;7.84e-09;7!CL:0000126;7.84e-09;7!CL:0000127;7.84e-09;7!CL:0000047;1.41e-08;2!CL:0002319;2.16e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.18e-12,3;CL:0000128,8.20e-09,7;CL:0000126,8.20e-09,7;CL:0000127,8.20e-09,7;CL:0002453,8.20e-09,7;CL:0002319,2.20e-07,25;CL:0000047,2.63e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.54e-16;82!UBERON:0006241;1.40e-11;3!UBERON:0003057;1.40e-11;3!UBERON:0010122;1.06e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p17@ITGB8 | |||
}} |
Revision as of 00:26, 14 September 2013
Short description: | p17@ITGB8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_ITGB8_5end |
Coexpression cluster: | C4673_retina_substantia_optic_Astrocyte_melanoma_Neural_thalamus |
Association with transcript: | 377bp_to_ENST00000222573_5end |
EntrezGene: | ITGB8 |
HGNC: | 6163 |
UniProt: | P26012 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.18e-12 | 3 |
oligodendrocyte | 8.20e-09 | 7 |
macroglial cell | 8.20e-09 | 7 |
astrocyte | 8.20e-09 | 7 |
oligodendrocyte precursor cell | 8.20e-09 | 7 |
neural cell | 2.20e-07 | 25 |
neuronal stem cell | 2.63e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.