FFCP PHASE1:Hg19::chr5:138210954..138210965,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26045|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19409|TSSclassifier=S|UniProt=O43300|association_with_transcript=13bp_to_ENST00000274711_5end|coexpression_cluster_id=C257|description=CAGE_peak_4_at_LRRTM2_5end|id=chr5:138210954..138210965,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;1.93e-09;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.46e-12,8|ontology_enrichment_development_v019=UBERON:0006601;6.60e-16;82!UBERON:0010122;5.65e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.87e-81!82;UBERON:0005743!3.83e-79!86;UBERON:0000073!2.13e-77!94;UBERON:0001016!2.13e-77!94;UBERON:0001049!1.13e-76!57;UBERON:0005068!1.13e-76!57;UBERON:0006241!1.13e-76!57;UBERON:0007135!1.13e-76!57;UBERON:0002780!3.46e-71!41;UBERON:0001890!3.46e-71!41;UBERON:0006240!3.46e-71!41;UBERON:0003080!3.35e-69!42;UBERON:0000955!1.70e-67!69;UBERON:0006238!1.70e-67!69;UBERON:0002616!1.53e-64!59;UBERON:0001893!2.61e-62!34;UBERON:0002020!2.67e-62!34;UBERON:0003528!2.67e-62!34;UBERON:0002791!1.90e-60!33;UBERON:0001869!2.77e-59!32;UBERON:0003075!2.76e-56!86;UBERON:0007284!2.76e-56!86;UBERON:0002346!5.04e-53!90;UBERON:0003056!7.28e-51!61;UBERON:0000956!5.78e-47!25;UBERON:0000203!5.78e-47!25;UBERON:0002619!2.97e-42!22;UBERON:0001950!9.11e-39!20;UBERON:0004121!9.43e-39!169;UBERON:0000153!1.05e-38!129;UBERON:0007811!1.05e-38!129;UBERON:0000033!1.51e-38!123;UBERON:0000924!2.14e-37!173;UBERON:0006601!2.14e-37!173;UBERON:0007023!6.15e-33!115;UBERON:0002420!8.01e-17!9;UBERON:0007245!8.01e-17!9;UBERON:0010009!8.01e-17!9;UBERON:0010011!8.01e-17!9;UBERON:0000454!8.01e-17!9;UBERON:0002308!2.07e-16!9;UBERON:0000125!2.07e-16!9;UBERON:0000025!2.21e-16!194;UBERON:0001871!9.55e-16!7;UBERON:0009663!3.34e-13!7;UBERON:0000475!5.52e-13!365;UBERON:0004111!9.25e-13!241;UBERON:0000200!1.17e-12!6;UBERON:0000064!1.57e-11!219;UBERON:0000483!4.22e-11!309;UBERON:0000477!4.27e-11!286;UBERON:0000119!7.91e-11!312;UBERON:0000349!1.37e-10!5;UBERON:0001872!1.98e-10!5;UBERON:0003076!2.21e-10!15;UBERON:0003057!2.21e-10!15;UBERON:0001894!3.51e-10!7;UBERON:0006222!3.51e-10!7;UBERON:0002021!4.16e-10!5;UBERON:0000369!1.37e-08!4;UBERON:0002435!1.37e-08!4;UBERON:0000204!1.37e-08!4;UBERON:0010082!1.37e-08!4;UBERON:0000481!3.09e-08!347;UBERON:0000480!6.89e-08!626;UBERON:0002298!7.50e-08!8;UBERON:0000467!1.99e-07!625;UBERON:0002771!2.65e-07!3|ontology_enrichment_uberon_v019=UBERON:0001869;1.47e-91;32!UBERON:0003528;6.75e-88;34!UBERON:0002020;6.75e-88;34!UBERON:0002791;3.55e-86;32!UBERON:0001893;2.71e-82;34!UBERON:0002619;1.15e-81;22!UBERON:0000956;4.24e-78;25!UBERON:0000203;4.24e-78;25!UBERON:0002780;1.14e-75;41!UBERON:0001890;1.14e-75;41!UBERON:0001950;9.15e-75;20!UBERON:0000073;9.55e-55;53!UBERON:0002616;9.55e-55;53!UBERON:0000955;1.51e-37;68!UBERON:0001017;4.62e-35;75!UBERON:0001016;1.07e-32;83!UBERON:0001871;8.46e-26;6!UBERON:0002420;2.79e-25;9!UBERON:0007245;2.79e-25;9!UBERON:0010009;2.79e-25;9!UBERON:0010011;2.79e-25;9!UBERON:0000454;2.79e-25;9!UBERON:0000125;1.57e-24;9!UBERON:0002308;1.57e-24;9!UBERON:0000200;2.89e-23;6!UBERON:0000349;2.95e-19;5!UBERON:0001872;8.03e-19;5!UBERON:0009663;2.43e-18;7!UBERON:0002021;2.95e-18;5!UBERON:0002784;2.37e-16;4!UBERON:0000369;3.04e-15;4!UBERON:0002435;3.04e-15;4!UBERON:0000204;3.04e-15;4!UBERON:0001894;5.56e-14;7!UBERON:0001870;5.22e-13;3!UBERON:0007023;2.19e-12;114!UBERON:0011216;5.79e-12;132!UBERON:0005383;1.51e-11;3!UBERON:0005382;1.51e-11;3!UBERON:0000988;3.97e-11;3!UBERON:0001905;1.93e-09;2!UBERON:0002757;1.93e-09;2!UBERON:0010134;1.93e-09;2!UBERON:0005408;1.93e-09;2!UBERON:0001899;1.93e-09;2!UBERON:0002702;3.11e-09;2!UBERON:0002771;4.36e-09;2!UBERON:0010314;4.72e-09;132!UBERON:0001876;7.69e-09;2!UBERON:0001897;1.24e-08;2!UBERON:0010225;1.24e-08;2!UBERON:0001954;2.00e-08;2!UBERON:0003022;2.00e-08;2!UBERON:0002421;2.00e-08;2!UBERON:0002600;2.00e-08;2!UBERON:0001873;5.65e-08;2!UBERON:0002148;5.65e-08;2!UBERON:0001875;5.65e-08;2!UBERON:0006331;5.65e-08;2!UBERON:0009662;5.65e-08;2!UBERON:0006514;5.65e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0002780,8.03e-109,41;UBERON:0001890,8.03e-109,41;UBERON:0003080,8.03e-109,41;UBERON:0006240,8.03e-109,41;UBERON:0000073,1.69e-102,53;UBERON:0002616,1.69e-102,53;UBERON:0001869,2.42e-102,32;UBERON:0003528,4.26e-102,34;UBERON:0002020,4.26e-102,34;UBERON:0001049,5.74e-102,56;UBERON:0005068,5.74e-102,56;UBERON:0006241,5.74e-102,56;UBERON:0007135,5.74e-102,56;UBERON:0001017,2.86e-100,81;UBERON:0001893,4.75e-96,34;UBERON:0002791,1.74e-95,32;UBERON:0001016,2.28e-93,89;UBERON:0000955,1.61e-85,68;UBERON:0006238,1.61e-85,68;UBERON:0002619,9.29e-82,22;UBERON:0000956,3.93e-78,25;UBERON:0000203,3.93e-78,25;UBERON:0003056,5.33e-75,61;UBERON:0001950,7.36e-75,20;UBERON:0003075,1.49e-70,82;UBERON:0007284,1.49e-70,82;UBERON:0002346,7.19e-67,86;UBERON:0010371,9.15e-54,104;UBERON:0004121,1.38e-46,171;UBERON:0000924,1.38e-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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19409 | |||
|TSSclassifier=S | |||
|UniProt=O43300 | |||
|association_with_transcript=13bp_to_ENST00000274711_5end | |||
|coexpression_cluster_id=C257 | |||
|description=CAGE_peak_4_at_LRRTM2_5end | |||
|id=chr5:138210954..138210965,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.93e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.46e-12,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.60e-16;82!UBERON:0010122;5.65e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@LRRTM2 | |||
}} |
Revision as of 13:26, 13 September 2013
Short description: | p4@LRRTM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LRRTM2_5end |
Coexpression cluster: | C257_pineal_insula_frontal_occipital_temporal_medial_paracentral |
Association with transcript: | 13bp_to_ENST00000274711_5end |
EntrezGene: | LRRTM2 |
HGNC: | 19409 |
UniProt: | O43300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.46e-12 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.