FFCP PHASE1:Mm9::chr12:114067697..114067715,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71963|HGNC=|MCL_coexpression_id=381|UniProt=|association_with_transcript=-63bp_to_uc007pfj.1_5end|description=CAGE_peak_3_at_Cdca4_5end|id=chr12:114067697..114067715,-|ontology_enrichment_celltype=CL:0000988!3.42e-12!32;CL:0002032!3.42e-12!32;CL:0000037!3.42e-12!32;CL:0000566!3.42e-12!32;CL:0000837!3.42e-12!32;CL:0002031!3.25e-09!25;CL:0002320!9.35e-09!46;CL:0000134!9.35e-09!46;CL:0000219!1.17e-07!54;CL:0000542!4.34e-07!13;CL:0000051!4.34e-07!13;CL:0000838!8.68e-07!12;CL:0000791!9.49e-07!9;CL:0000789!9.49e-07!9;CL:0002420!9.49e-07!9;CL:0002419!9.49e-07!9;CL:0000790!9.49e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.23e-21,32;CL:0002032,1.23e-21,32;CL:0000037,1.23e-21,32;CL:0000837,1.23e-21,32;CL:0002031,1.24e-15,25;CL:0002320,5.44e-15,46;CL:0000134,5.44e-15,46;CL:0000219,1.17e-13,54;CL:0000791,3.57e-12,9;CL:0000789,3.57e-12,9;CL:0002420,3.57e-12,9;CL:0002419,3.57e-12,9;CL:0000790,3.57e-12,9;CL:0000542,1.99e-11,13;CL:0000051,1.99e-11,13;CL:0000624,2.04e-11,8;CL:0000049,2.35e-11,19;CL:0000838,8.40e-11,12;CL:0000050,2.58e-10,9;CL:0000084,1.60e-09,11;CL:0000827,1.60e-09,11;CL:0000893,2.32e-09,6;CL:0002489,2.32e-09,6;CL:0000898,2.32e-09,6;CL:0000809,2.32e-09,6;CL:0000810,2.32e-09,6;CL:0000895,2.32e-09,6;CL:0000808,2.32e-09,6;CL:0000894,2.32e-09,6;CL:0000806,2.32e-09,6;CL:0000807,2.32e-09,6;CL:0000805,2.32e-09,6;CL:0002425,2.32e-09,6;CL:0002436,2.32e-09,6;CL:0002427,2.32e-09,6;CL:0002428,2.32e-09,6;CL:0002429,2.32e-09,6;CL:0002433,2.32e-09,6;CL:0002431,2.32e-09,6;CL:0002432,2.32e-09,6;CL:0000763,7.54e-09,16;CL:0000738,5.02e-08,17;CL:0002087,5.02e-08,17;CL:0000553,1.70e-07,6;CL:0000556,1.70e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!9.45e-13!45;UBERON:0003061!9.45e-13!45;UBERON:0002193!7.52e-12!48;UBERON:0004177!1.06e-10!29;UBERON:0002370!6.01e-10!23;UBERON:0000974!6.01e-10!23;UBERON:0004807!6.01e-10!23;UBERON:0005058!6.01e-10!23;UBERON:0003351!6.01e-10!23;UBERON:0009113!6.01e-10!23;UBERON:0003295!6.01e-10!23;UBERON:0009722!6.01e-10!23;UBERON:0005562!6.01e-10!23;UBERON:0007690!6.01e-10!23;UBERON:0006562!6.37e-09!24;UBERON:0003408!6.37e-09!24;UBERON:0001557!6.37e-09!24;UBERON:0001042!6.37e-09!24;UBERON:0008814!6.37e-09!24;UBERON:0009145!6.37e-09!24;UBERON:0002384!9.35e-09!46;UBERON:0000072!1.76e-08!27;UBERON:0003081!1.04e-07!88;UBERON:0002405!1.79e-07!70|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.76e-18,45;UBERON:0003061,2.76e-18,45;UBERON:0002370,3.33e-18,23;UBERON:0000974,3.33e-18,23;UBERON:0004807,3.33e-18,23;UBERON:0005058,3.33e-18,23;UBERON:0003351,3.33e-18,23;UBERON:0009113,3.33e-18,23;UBERON:0003295,3.33e-18,23;UBERON:0009722,3.33e-18,23;UBERON:0005562,3.33e-18,23;UBERON:0007690,3.33e-18,23;UBERON:0002193,9.16e-18,48;UBERON:0002405,9.16e-18,48;UBERON:0006562,3.46e-17,24;UBERON:0003408,3.46e-17,24;UBERON:0001557,3.46e-17,24;UBERON:0001042,3.46e-17,24;UBERON:0008814,3.46e-17,24;UBERON:0009145,3.46e-17,24;UBERON:0002384,5.44e-15,46;UBERON:0004177,7.52e-15,29;UBERON:0005057,7.52e-15,29;UBERON:0000072,1.33e-14,27;UBERON:0000077,3.05e-11,35;UBERON:0007811,1.67e-09,36;UBERON:0000065,2.09e-09,41;UBERON:0001004,4.85e-09,42;UBERON:0000153,4.27e-08,43;UBERON:0003081,4.53e-08,87;UBERON:0000926,1.96e-07,120;UBERON:0004120,1.96e-07,120;UBERON:0006603,1.96e-07,120|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,3.09895976259783,4.78681655315667,4.44722600011788,4.79410311031414,5.42450681168288,2.39681021903688,3.58423649917889,1.99865857089398,1.01237633694913,1.39912375625629,1.89277299214943,3.29074640653773,5.09267582157636,2.12608225377674,0.794327609607082,0.261199789138935,0,0.22940928106717,0,0,0,0,0,0.443461021310609,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0.204169356262369,0,0,0.523523743973798,1.76469446409304,0,1.45653105909346,0.377690453926732,0.608261587317087,0.367093504323363,0.782391344348039,0,0.219686182734472,0,0,1.43752564364972,5.03347818173209,1.45072428402269,1.34437519656986,0.257259436035947,0.286533439938757,0,0.606949382578793,0,0.633831403506179,0.677689064138264,0,0.449949858640699,0.988866362566974,0,0.299600110518405,0.384218305321555,0.933206510776299,0.540023753326763,0.210324961351382,0,0,0.61245399607477,0.287536413054709,0,0,0.127687338085188,0.153606533256243,0.395658863190582,0.640413505216868,0,0.279182999001381,0,0.15279824777681,0,0,0.186399445825301,1.21161909333094,0.529000920747499,0.869593466105033,0,1.3599426674155,0,0,0,0.561777680527007,0.852151612890289,1.29893002301434,0.35333957451034,0.14084341977668,0,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,0.34255163915718,1.03575153458869,0,0.346970653532272,0,0,0,0.117588707135705,0.376999773989026,0,0.433798070759735,1.76922110389975,0.161766849947409,0.441683036920787,0.484875253135222,0,0.292780797011547,0.209446706813455,0.255457055208591,1.55759661857696,2.39961092397363,1.01656181658452,0.149790639404823,0,0.376963056338593,0,0,0.20778804455956,0.162241263067758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| ||
|EntrezGene=71963 | |||
|HGNC= | |||
|MCL_coexpression_id=381 | |||
|UniProt= | |||
|association_with_transcript=-63bp_to_uc007pfj.1_5end | |||
|description=CAGE_peak_3_at_Cdca4_5end | |||
|id=chr12:114067697..114067715,- | |||
|ontology_enrichment_celltype=CL:0000988!3.42e-12!32;CL:0002032!3.42e-12!32;CL:0000037!3.42e-12!32;CL:0000566!3.42e-12!32;CL:0000837!3.42e-12!32;CL:0002031!3.25e-09!25;CL:0002320!9.35e-09!46;CL:0000134!9.35e-09!46;CL:0000219!1.17e-07!54;CL:0000542!4.34e-07!13;CL:0000051!4.34e-07!13;CL:0000838!8.68e-07!12;CL:0000791!9.49e-07!9;CL:0000789!9.49e-07!9;CL:0002420!9.49e-07!9;CL:0002419!9.49e-07!9;CL:0000790!9.49e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.23e-21,32;CL:0002032,1.23e-21,32;CL:0000037,1.23e-21,32;CL:0000837,1.23e-21,32;CL:0002031,1.24e-15,25;CL:0002320,5.44e-15,46;CL:0000134,5.44e-15,46;CL:0000219,1.17e-13,54;CL:0000791,3.57e-12,9;CL:0000789,3.57e-12,9;CL:0002420,3.57e-12,9;CL:0002419,3.57e-12,9;CL:0000790,3.57e-12,9;CL:0000542,1.99e-11,13;CL:0000051,1.99e-11,13;CL:0000624,2.04e-11,8;CL:0000049,2.35e-11,19;CL:0000838,8.40e-11,12;CL:0000050,2.58e-10,9;CL:0000084,1.60e-09,11;CL:0000827,1.60e-09,11;CL:0000893,2.32e-09,6;CL:0002489,2.32e-09,6;CL:0000898,2.32e-09,6;CL:0000809,2.32e-09,6;CL:0000810,2.32e-09,6;CL:0000895,2.32e-09,6;CL:0000808,2.32e-09,6;CL:0000894,2.32e-09,6;CL:0000806,2.32e-09,6;CL:0000807,2.32e-09,6;CL:0000805,2.32e-09,6;CL:0002425,2.32e-09,6;CL:0002436,2.32e-09,6;CL:0002427,2.32e-09,6;CL:0002428,2.32e-09,6;CL:0002429,2.32e-09,6;CL:0002433,2.32e-09,6;CL:0002431,2.32e-09,6;CL:0002432,2.32e-09,6;CL:0000763,7.54e-09,16;CL:0000738,5.02e-08,17;CL:0002087,5.02e-08,17;CL:0000553,1.70e-07,6;CL:0000556,1.70e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.45e-13!45;UBERON:0003061!9.45e-13!45;UBERON:0002193!7.52e-12!48;UBERON:0004177!1.06e-10!29;UBERON:0002370!6.01e-10!23;UBERON:0000974!6.01e-10!23;UBERON:0004807!6.01e-10!23;UBERON:0005058!6.01e-10!23;UBERON:0003351!6.01e-10!23;UBERON:0009113!6.01e-10!23;UBERON:0003295!6.01e-10!23;UBERON:0009722!6.01e-10!23;UBERON:0005562!6.01e-10!23;UBERON:0007690!6.01e-10!23;UBERON:0006562!6.37e-09!24;UBERON:0003408!6.37e-09!24;UBERON:0001557!6.37e-09!24;UBERON:0001042!6.37e-09!24;UBERON:0008814!6.37e-09!24;UBERON:0009145!6.37e-09!24;UBERON:0002384!9.35e-09!46;UBERON:0000072!1.76e-08!27;UBERON:0003081!1.04e-07!88;UBERON:0002405!1.79e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.76e-18,45;UBERON:0003061,2.76e-18,45;UBERON:0002370,3.33e-18,23;UBERON:0000974,3.33e-18,23;UBERON:0004807,3.33e-18,23;UBERON:0005058,3.33e-18,23;UBERON:0003351,3.33e-18,23;UBERON:0009113,3.33e-18,23;UBERON:0003295,3.33e-18,23;UBERON:0009722,3.33e-18,23;UBERON:0005562,3.33e-18,23;UBERON:0007690,3.33e-18,23;UBERON:0002193,9.16e-18,48;UBERON:0002405,9.16e-18,48;UBERON:0006562,3.46e-17,24;UBERON:0003408,3.46e-17,24;UBERON:0001557,3.46e-17,24;UBERON:0001042,3.46e-17,24;UBERON:0008814,3.46e-17,24;UBERON:0009145,3.46e-17,24;UBERON:0002384,5.44e-15,46;UBERON:0004177,7.52e-15,29;UBERON:0005057,7.52e-15,29;UBERON:0000072,1.33e-14,27;UBERON:0000077,3.05e-11,35;UBERON:0007811,1.67e-09,36;UBERON:0000065,2.09e-09,41;UBERON:0001004,4.85e-09,42;UBERON:0000153,4.27e-08,43;UBERON:0003081,4.53e-08,87;UBERON:0000926,1.96e-07,120;UBERON:0004120,1.96e-07,120;UBERON:0006603,1.96e-07,120 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,3.09895976259783,4.78681655315667,4.44722600011788,4.79410311031414,5.42450681168288,2.39681021903688,3.58423649917889,1.99865857089398,1.01237633694913,1.39912375625629,1.89277299214943,3.29074640653773,5.09267582157636,2.12608225377674,0.794327609607082,0.261199789138935,0,0.22940928106717,0,0,0,0,0,0.443461021310609,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0.204169356262369,0,0,0.523523743973798,1.76469446409304,0,1.45653105909346,0.377690453926732,0.608261587317087,0.367093504323363,0.782391344348039,0,0.219686182734472,0,0,1.43752564364972,5.03347818173209,1.45072428402269,1.34437519656986,0.257259436035947,0.286533439938757,0,0.606949382578793,0,0.633831403506179,0.677689064138264,0,0.449949858640699,0.988866362566974,0,0.299600110518405,0.384218305321555,0.933206510776299,0.540023753326763,0.210324961351382,0,0,0.61245399607477,0.287536413054709,0,0,0.127687338085188,0.153606533256243,0.395658863190582,0.640413505216868,0,0.279182999001381,0,0.15279824777681,0,0,0.186399445825301,1.21161909333094,0.529000920747499,0.869593466105033,0,1.3599426674155,0,0,0,0.561777680527007,0.852151612890289,1.29893002301434,0.35333957451034,0.14084341977668,0,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,0.34255163915718,1.03575153458869,0,0.346970653532272,0,0,0,0.117588707135705,0.376999773989026,0,0.433798070759735,1.76922110389975,0.161766849947409,0.441683036920787,0.484875253135222,0,0.292780797011547,0.209446706813455,0.255457055208591,1.55759661857696,2.39961092397363,1.01656181658452,0.149790639404823,0,0.376963056338593,0,0,0.20778804455956,0.162241263067758,0.509196819251581,1.11966273549084,0.252722758433675,0.420883711772948,0.910843100738926,0.459804208866946,0.540186389416048,0.30140963567143,0.884474488967262,0.896796041993948,0.374806898238915,0.258703370739016,2.37124792226126,0.756424320671277,0.527853372491847,0,0.278047249225598,0.696504333044333,0,0,1.40442637462647,1.02939162845886,2.27330799516474,0.621377317606506,1.40715635988658,0.720248245844059,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0.820837320395476,0,0.292399974850665,0,0,0,0.102904612379284,0,0.264450566663544,1.06644125267617,0.696710015581316,0.644337306610467,0.201683524623343,0.444756087689741,0,0.474529061544512,0,0.251335208800269,0,0.38992817423824,1.79763881730844,0,0,1.13800740571849,0.799739588268102,1.1270773567308,0.203651327845314,0.581857461502877,0.49095073923223,0.189709611372772,0.147610147979602,0.470996183524124,0,0,0.667380422864376,0.589676985339609,0.449724224769707,0.405720242777006,1.4470629585145,1.01850340712568,0.575392274901621,0,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0.179397413521912,0,0.369506380333209,1.13694847062291,0.814824882210129,1.01847051465113,0.234690248288502,0,0.238043640886014,0,0.788175720530955,0.44292937929755,0.797273843287435,0.491589944147214,0.345369963731791,0.144649058581512,0,0.54390568381871,0,0.275936746304732,0.160550589987792,0.117211686592203,0.819674726883377,0,0.94652465824877,0,0,0.477937595905104,0,0.283076530788832,0.404810701674894,0,0.395287777946524,0.642642632843614,0.425820255624806,0.712262414669021,0.977321756121456,0.329940245945071,1.32745138339963,0.242780636154981,0.604647113929502,0,0.590603785761546,0.307435147943927,0,0.363533729477506,0.356497378384721,0.632073515871632,0,0,0.340439605753788,0.900305470156551,0.646793418913773,0.428674070063185,0.709360934569094,0.713475270408282,0.658196082408484,0.304464949114599,0.23467170806371,0.42366414172764,0,1.15420377059036,0.484393280087717,0.542816324353403,0.835606408021955,0.492422699235184,0,0.18542530201051,0.683483523191411,0.412773735926445,0.740778109478847,0.941842285023455,0.546776910884101,2.0590035588587,4.07948231985253,2.93898049879682,3.86959926652387,0,0.632671987162271,0.203319467126849,0.324016022465404,0,0,0.539457385539283,0.165306911450672,0.26175594198403,0,0,6.20062232552609,0.448549638131936,1.32366792365678,1.55560950675238,1.16243841129958,0.844780627453891,0.821500670520278,0.5208175393758,1.46803082195995,6.76435538312817,5.18454011264158,0.948033361884535,1.62180172232131,0.616265742988964,1.29920822977795,1.79026695667481,3.57626438606277,3.72605893511903,1.62458479892035,2.62512769865184,2.362411006305,2.01652370273681,2.24153125701431,2.11666051608725,1.75315353272353,0,1.33191572024439,0.986852422704233,1.84673078000486,0.19318959403219,0.750729901804728,0.549454872801795,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0.675022500231806,0.900642406448441,0,0,0.93408612825759,1.19707462020309,0.682934423016537,0.486213434136588,0.209613162627982,0.551530525350042,0,0,0.320919209591815,0.505394423527595,0,0.377252682772152,0.187283014939765,0.128050304809739,0.34461281373368,0,0.463537303779422,0.192909220463705,0.412085900803307,0.441596760403192,0,0.354951612318675,0,0.581385666529314,0.47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| |||
|short_description=p3@Cdca4 | |||
}} |
Revision as of 22:23, 12 September 2013
Short description: | p3@Cdca4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cdca4_5end |
Coexpression cluster: | MCL_coexpression_mm9:381 |
Association with transcript: | -63bp_to_uc007pfj.1_5end |
EntrezGene: | Cdca4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.76e-18 | 45 |
blood island | 2.76e-18 | 45 |
thymus | 3.33e-18 | 23 |
neck | 3.33e-18 | 23 |
respiratory system epithelium | 3.33e-18 | 23 |
hemolymphoid system gland | 3.33e-18 | 23 |
pharyngeal epithelium | 3.33e-18 | 23 |
thymic region | 3.33e-18 | 23 |
pharyngeal gland | 3.33e-18 | 23 |
entire pharyngeal arch endoderm | 3.33e-18 | 23 |
thymus primordium | 3.33e-18 | 23 |
early pharyngeal endoderm | 3.33e-18 | 23 |
hemolymphoid system | 9.16e-18 | 48 |
immune system | 9.16e-18 | 48 |
pharynx | 3.46e-17 | 24 |
gland of gut | 3.46e-17 | 24 |
upper respiratory tract | 3.46e-17 | 24 |
chordate pharynx | 3.46e-17 | 24 |
pharyngeal arch system | 3.46e-17 | 24 |
pharyngeal region of foregut | 3.46e-17 | 24 |
connective tissue | 5.44e-15 | 46 |
hemopoietic organ | 7.52e-15 | 29 |
immune organ | 7.52e-15 | 29 |
segment of respiratory tract | 1.33e-14 | 27 |
mixed endoderm/mesoderm-derived structure | 3.05e-11 | 35 |
craniocervical region | 1.67e-09 | 36 |
respiratory tract | 2.09e-09 | 41 |
respiratory system | 4.85e-09 | 42 |
anterior region of body | 4.27e-08 | 43 |
lateral plate mesoderm | 4.53e-08 | 87 |
mesoderm | 1.96e-07 | 120 |
mesoderm-derived structure | 1.96e-07 | 120 |
presumptive mesoderm | 1.96e-07 | 120 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.