FFCP PHASE1:Hg19::chr2:21234298..21234307,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=338|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=603|TSSclassifier=N|UniProt=P04114|association_with_transcript=-367bp_to_X03326_5end|coexpression_cluster_id=C5|description=CAGE_peak_45_at_APOB_5end|id=chr2:21234298..21234307,-|ontology_enrichment_celltype=CL:0000181!1.91e-35!12;CL:0000417!1.91e-35!12;CL:0000668!1.91e-35!12;CL:0000414!1.91e-35!12;CL:0000412!1.91e-35!12;CL:0000182!1.91e-35!12;CL:0000223!5.18e-12!59|ontology_enrichment_celltype_v019=CL:0000182;9.55e-52;12|ontology_enrichment_celltype_v019_2=CL:0000182,8.60e-52,12;CL:0000223,5.27e-11,58|ontology_enrichment_development_v019=UBERON:0004161;2.70e-36;11!UBERON:0009497;8.13e-31;13!UBERON:0001041;1.13e-13;30!UBERON:0003104;4.06e-13;31!CL:0000223;1.19e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!3.84e-30!19;UBERON:0006925!3.84e-30!19;UBERON:0008836!3.84e-30!19;UBERON:0005057!2.63e-28!26;UBERON:0008835!5.76e-26!22;UBERON:0003894!5.76e-26!22;UBERON:0009854!8.15e-25!23;UBERON:0007499!8.65e-23!25;UBERON:0009497!8.65e-23!25;UBERON:0000015!8.65e-23!25;UBERON:0002423!8.65e-23!25;UBERON:0006235!8.65e-23!25;UBERON:0004161!8.65e-23!25;UBERON:0009856!6.82e-22!26;UBERON:0004921!2.04e-18!129;UBERON:0004185!2.04e-18!129;UBERON:0002365!2.83e-18!31;UBERON:0002330!2.83e-18!31;UBERON:0003929!1.04e-16!54;UBERON:0002368!4.03e-16!35;UBERON:0001007!4.98e-15!155;UBERON:0001555!4.98e-15!155;UBERON:0007026!4.98e-15!155;UBERON:0004119!1.25e-13!169;UBERON:0000925!1.25e-13!169;UBERON:0006595!1.25e-13!169;UBERON:0005172!5.81e-13!55;UBERON:0005173!5.81e-13!55;UBERON:0000949!2.09e-12!45;UBERON:0002530!4.72e-12!59;UBERON:0002417!1.33e-11!61;UBERON:0000916!1.33e-11!61;UBERON:0005409!2.90e-11!35;UBERON:0005911!1.22e-10!82;UBERON:0000160!2.34e-10!27;UBERON:0005177!7.20e-08!107;UBERON:0000077!8.68e-08!130;UBERON:0002108!1.22e-07!14;UBERON:0001255!4.69e-07!2;UBERON:0001556!4.69e-07!2;UBERON:0001041!6.94e-07!98|ontology_enrichment_uberon_v019=UBERON:0002107;6.45e-47;19!UBERON:0006925;6.45e-47;19!UBERON:0002423;9.46e-36;25!UBERON:0002365;4.58e-28;31!UBERON:0002330;4.58e-28;31!UBERON:0002368;8.33e-24;33!UBERON:0002108;1.63e-20;4!UBERON:0000949;3.19e-19;43!UBERON:0002530;6.04e-11;57!UBERON:0005172;7.25e-11;52!UBERON:0005173;7.25e-11;52!UBERON:0001007;1.37e-09;81!UBERON:0002114;1.74e-09;2!UBERON:0002417;1.32e-08;58!UBERON:0000916;1.32e-08;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.45e-47,19;UBERON:0006925,6.45e-47,19;UBERON:0008836,6.45e-47,19;UBERON:0008835,1.42e-40,22;UBERON:0003894,1.42e-40,22;UBERON:0009854,7.93e-39,23;UBERON:0007499,9.46e-36,25;UBERON:0009497,9.46e-36,25;UBERON:0000015,9.46e-36,25;UBERON:0002423,9.46e-36,25;UBERON:0006235,9.46e-36,25;UBERON:0004161,9.46e-36,25;UBERON:0009856,2.17e-34,26;UBERON:0002365,6.77e-29,31;UBERON:0002330,6.77e-29,31;UBERON:0002368,1.26e-25,35;UBERON:0002108,1.64e-20,4;UBERON:0000949,5.46e-20,45;UBERON:0003929,1.08e-16,54;UBERON:0005172,1.08e-16,54;UBERON:0005173,1.08e-16,54;UBERON:0002530,2.72e-15,59;UBERON:0002417,4.86e-15,60;UBERON:0000916,4.86e-15,60;UBERON:0004921,2.56e-13,118;UBERON:0005911,4.90e-11,82;UBERON:0001007,7.53e-11,145;UBERON:0001555,7.53e-11,145;UBERON:0007026,7.53e-11,145;UBERON:0001041,2.09e-10,87;UBERON:0004119,7.84e-10,160;UBERON:0000925,7.84e-10,160;UBERON:0006595,7.84e-10,160;UBERON:0002114,1.81e-09,2;UBERON:0005177,5.70e-09,101;UBERON:0009569,4.32e-08,112;UBERON:0003914,9.58e-08,117;UBERON:0005256,1.99e-07,122;UBERON:0011216,6.23e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,3.9313088667105,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20592910460226,3.79112948553366,2.6961417541674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19828350517124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694567422971502,1.09279780251979,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p45@APOB}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=N | |||
|UniProt=P04114 | |||
|association_with_transcript=-367bp_to_X03326_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_45_at_APOB_5end | |||
|id=chr2:21234298..21234307,- | |||
|ontology_enrichment_celltype=CL:0000181!1.91e-35!12;CL:0000417!1.91e-35!12;CL:0000668!1.91e-35!12;CL:0000414!1.91e-35!12;CL:0000412!1.91e-35!12;CL:0000182!1.91e-35!12;CL:0000223!5.18e-12!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;9.55e-52;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.60e-52,12;CL:0000223,5.27e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.70e-36;11!UBERON:0009497;8.13e-31;13!UBERON:0001041;1.13e-13;30!UBERON:0003104;4.06e-13;31!CL:0000223;1.19e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.84e-30!19;UBERON:0006925!3.84e-30!19;UBERON:0008836!3.84e-30!19;UBERON:0005057!2.63e-28!26;UBERON:0008835!5.76e-26!22;UBERON:0003894!5.76e-26!22;UBERON:0009854!8.15e-25!23;UBERON:0007499!8.65e-23!25;UBERON:0009497!8.65e-23!25;UBERON:0000015!8.65e-23!25;UBERON:0002423!8.65e-23!25;UBERON:0006235!8.65e-23!25;UBERON:0004161!8.65e-23!25;UBERON:0009856!6.82e-22!26;UBERON:0004921!2.04e-18!129;UBERON:0004185!2.04e-18!129;UBERON:0002365!2.83e-18!31;UBERON:0002330!2.83e-18!31;UBERON:0003929!1.04e-16!54;UBERON:0002368!4.03e-16!35;UBERON:0001007!4.98e-15!155;UBERON:0001555!4.98e-15!155;UBERON:0007026!4.98e-15!155;UBERON:0004119!1.25e-13!169;UBERON:0000925!1.25e-13!169;UBERON:0006595!1.25e-13!169;UBERON:0005172!5.81e-13!55;UBERON:0005173!5.81e-13!55;UBERON:0000949!2.09e-12!45;UBERON:0002530!4.72e-12!59;UBERON:0002417!1.33e-11!61;UBERON:0000916!1.33e-11!61;UBERON:0005409!2.90e-11!35;UBERON:0005911!1.22e-10!82;UBERON:0000160!2.34e-10!27;UBERON:0005177!7.20e-08!107;UBERON:0000077!8.68e-08!130;UBERON:0002108!1.22e-07!14;UBERON:0001255!4.69e-07!2;UBERON:0001556!4.69e-07!2;UBERON:0001041!6.94e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.45e-47;19!UBERON:0006925;6.45e-47;19!UBERON:0002423;9.46e-36;25!UBERON:0002365;4.58e-28;31!UBERON:0002330;4.58e-28;31!UBERON:0002368;8.33e-24;33!UBERON:0002108;1.63e-20;4!UBERON:0000949;3.19e-19;43!UBERON:0002530;6.04e-11;57!UBERON:0005172;7.25e-11;52!UBERON:0005173;7.25e-11;52!UBERON:0001007;1.37e-09;81!UBERON:0002114;1.74e-09;2!UBERON:0002417;1.32e-08;58!UBERON:0000916;1.32e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.45e-47,19;UBERON:0006925,6.45e-47,19;UBERON:0008836,6.45e-47,19;UBERON:0008835,1.42e-40,22;UBERON:0003894,1.42e-40,22;UBERON:0009854,7.93e-39,23;UBERON:0007499,9.46e-36,25;UBERON:0009497,9.46e-36,25;UBERON:0000015,9.46e-36,25;UBERON:0002423,9.46e-36,25;UBERON:0006235,9.46e-36,25;UBERON:0004161,9.46e-36,25;UBERON:0009856,2.17e-34,26;UBERON:0002365,6.77e-29,31;UBERON:0002330,6.77e-29,31;UBERON:0002368,1.26e-25,35;UBERON:0002108,1.64e-20,4;UBERON:0000949,5.46e-20,45;UBERON:0003929,1.08e-16,54;UBERON:0005172,1.08e-16,54;UBERON:0005173,1.08e-16,54;UBERON:0002530,2.72e-15,59;UBERON:0002417,4.86e-15,60;UBERON:0000916,4.86e-15,60;UBERON:0004921,2.56e-13,118;UBERON:0005911,4.90e-11,82;UBERON:0001007,7.53e-11,145;UBERON:0001555,7.53e-11,145;UBERON:0007026,7.53e-11,145;UBERON:0001041,2.09e-10,87;UBERON:0004119,7.84e-10,160;UBERON:0000925,7.84e-10,160;UBERON:0006595,7.84e-10,160;UBERON:0002114,1.81e-09,2;UBERON:0005177,5.70e-09,101;UBERON:0009569,4.32e-08,112;UBERON:0003914,9.58e-08,117;UBERON:0005256,1.99e-07,122;UBERON:0011216,6.23e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,3.9313088667105,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20592910460226,3.79112948553366,2.6961417541674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19828350517124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694567422971502,1.09279780251979,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p45@APOB | |||
}} |
Revision as of 16:26, 12 September 2013
Short description: | p45@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_45_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -367bp_to_X03326_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.60e-52 | 12 |
endodermal cell | 5.27e-11 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.