FFCP PHASE1:Hg19::chr2:21229042..21229053,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=338|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=603|TSSclassifier=N|UniProt=P04114|association_with_transcript=-485bp_to_M12413_5end|coexpression_cluster_id=C5|description=CAGE_peak_25_at_APOB_5end|id=chr2:21229042..21229053,-|ontology_enrichment_celltype=CL:0000181!6.07e-29!12;CL:0000417!6.07e-29!12;CL:0000668!6.07e-29!12;CL:0000414!6.07e-29!12;CL:0000412!6.07e-29!12;CL:0000182!6.07e-29!12;CL:0000223!5.82e-12!59;CL:0002563!2.85e-10!4|ontology_enrichment_celltype_v019=CL:0000182;6.46e-46;12|ontology_enrichment_celltype_v019_2=CL:0000182,6.22e-46,12;CL:0000223,2.25e-09,58|ontology_enrichment_development_v019=UBERON:0004161;7.92e-35;11!UBERON:0009497;1.67e-29;13!UBERON:0001041;7.60e-13;30!UBERON:0003104;2.06e-12;31!CL:0000223;3.45e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!6.37e-32!19;UBERON:0006925!6.37e-32!19;UBERON:0008836!6.37e-32!19;UBERON:0005057!5.86e-29!26;UBERON:0008835!1.89e-27!22;UBERON:0003894!1.89e-27!22;UBERON:0009854!3.23e-26!23;UBERON:0007499!4.78e-24!25;UBERON:0009497!4.78e-24!25;UBERON:0000015!4.78e-24!25;UBERON:0002423!4.78e-24!25;UBERON:0006235!4.78e-24!25;UBERON:0004161!4.78e-24!25;UBERON:0009856!4.36e-23!26;UBERON:0003929!6.98e-20!54;UBERON:0002365!3.27e-19!31;UBERON:0002330!3.27e-19!31;UBERON:0004921!1.37e-18!129;UBERON:0004185!1.37e-18!129;UBERON:0002368!6.59e-17!35;UBERON:0000160!8.81e-16!27;UBERON:0005409!1.07e-15!35;UBERON:0001007!4.75e-15!155;UBERON:0001555!4.75e-15!155;UBERON:0007026!4.75e-15!155;UBERON:0004119!1.37e-13!169;UBERON:0000925!1.37e-13!169;UBERON:0006595!1.37e-13!169;UBERON:0005172!4.66e-13!55;UBERON:0005173!4.66e-13!55;UBERON:0000949!6.22e-13!45;UBERON:0005911!1.61e-12!82;UBERON:0002530!4.23e-12!59;UBERON:0002417!1.19e-11!61;UBERON:0000916!1.19e-11!61;UBERON:0001242!2.85e-10!4;UBERON:0001262!2.85e-10!4;UBERON:0004786!2.85e-10!4;UBERON:0004808!2.85e-10!4;UBERON:0001277!2.85e-10!4;UBERON:0001155!6.08e-10!9;UBERON:0003350!2.16e-08!5;UBERON:0000059!3.15e-08!11;UBERON:0000077!3.00e-07!130;UBERON:0001041!8.91e-07!98;UBERON:0000490!9.59e-07!138|ontology_enrichment_uberon_v019=UBERON:0002107;3.99e-51;19!UBERON:0006925;3.99e-51;19!UBERON:0002423;9.17e-39;25!UBERON:0002365;5.42e-30;31!UBERON:0002330;5.42e-30;31!UBERON:0002108;1.33e-27;4!UBERON:0002368;1.77e-26;33!UBERON:0000949;2.36e-19;43!UBERON:0005172;1.39e-11;52!UBERON:0005173;1.39e-11;52!UBERON:0001007;5.68e-11;81!UBERON:0002417;3.42e-10;58!UBERON:0000916;3.42e-10;58!UBERON:0002530;4.49e-10;57!UBERON:0000160;3.94e-08;17|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.99e-51,19;UBERON:0006925,3.99e-51,19;UBERON:0008836,3.99e-51,19;UBERON:0008835,4.19e-44,22;UBERON:0003894,4.19e-44,22;UBERON:0009854,3.60e-42,23;UBERON:0007499,9.17e-39,25;UBERON:0009497,9.17e-39,25;UBERON:0000015,9.17e-39,25;UBERON:0002423,9.17e-39,25;UBERON:0006235,9.17e-39,25;UBERON:0004161,9.17e-39,25;UBERON:0009856,2.95e-37,26;UBERON:0002365,3.54e-31,31;UBERON:0002330,3.54e-31,31;UBERON:0002108,1.33e-27,4;UBERON:0002368,1.46e-27,35;UBERON:0000949,2.53e-21,45;UBERON:0003929,1.12e-17,54;UBERON:0005172,1.12e-17,54;UBERON:0005173,1.12e-17,54;UBERON:0002530,3.96e-16,59;UBERON:0002417,7.52e-16,60;UBERON:0000916,7.52e-16,60;UBERON:0004921,1.40e-14,118;UBERON:0001007,1.08e-11,145;UBERON:0001555,1.08e-11,145;UBERON:0007026,1.08e-11,145;UBERON:0005911,1.99e-11,82;UBERON:0001041,9.84e-11,87;UBERON:0004119,1.68e-10,160;UBERON:0000925,1.68e-10,160;UBERON:0006595,1.68e-10,160;UBERON:0005177,3.77e-09,101;UBERON:0009569,3.51e-08,112;UBERON:0000160,3.94e-08,17;UBERON:0003914,8.44e-08,117;UBERON:0005256,1.89e-07,122;UBERON:0011216,4.13e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8861076608028,10.8110993834539,5.31710916013264,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2827061428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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=N | |||
|UniProt=P04114 | |||
|association_with_transcript=-485bp_to_M12413_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_25_at_APOB_5end | |||
|id=chr2:21229042..21229053,- | |||
|ontology_enrichment_celltype=CL:0000181!6.07e-29!12;CL:0000417!6.07e-29!12;CL:0000668!6.07e-29!12;CL:0000414!6.07e-29!12;CL:0000412!6.07e-29!12;CL:0000182!6.07e-29!12;CL:0000223!5.82e-12!59;CL:0002563!2.85e-10!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.46e-46;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.22e-46,12;CL:0000223,2.25e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.92e-35;11!UBERON:0009497;1.67e-29;13!UBERON:0001041;7.60e-13;30!UBERON:0003104;2.06e-12;31!CL:0000223;3.45e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!6.37e-32!19;UBERON:0006925!6.37e-32!19;UBERON:0008836!6.37e-32!19;UBERON:0005057!5.86e-29!26;UBERON:0008835!1.89e-27!22;UBERON:0003894!1.89e-27!22;UBERON:0009854!3.23e-26!23;UBERON:0007499!4.78e-24!25;UBERON:0009497!4.78e-24!25;UBERON:0000015!4.78e-24!25;UBERON:0002423!4.78e-24!25;UBERON:0006235!4.78e-24!25;UBERON:0004161!4.78e-24!25;UBERON:0009856!4.36e-23!26;UBERON:0003929!6.98e-20!54;UBERON:0002365!3.27e-19!31;UBERON:0002330!3.27e-19!31;UBERON:0004921!1.37e-18!129;UBERON:0004185!1.37e-18!129;UBERON:0002368!6.59e-17!35;UBERON:0000160!8.81e-16!27;UBERON:0005409!1.07e-15!35;UBERON:0001007!4.75e-15!155;UBERON:0001555!4.75e-15!155;UBERON:0007026!4.75e-15!155;UBERON:0004119!1.37e-13!169;UBERON:0000925!1.37e-13!169;UBERON:0006595!1.37e-13!169;UBERON:0005172!4.66e-13!55;UBERON:0005173!4.66e-13!55;UBERON:0000949!6.22e-13!45;UBERON:0005911!1.61e-12!82;UBERON:0002530!4.23e-12!59;UBERON:0002417!1.19e-11!61;UBERON:0000916!1.19e-11!61;UBERON:0001242!2.85e-10!4;UBERON:0001262!2.85e-10!4;UBERON:0004786!2.85e-10!4;UBERON:0004808!2.85e-10!4;UBERON:0001277!2.85e-10!4;UBERON:0001155!6.08e-10!9;UBERON:0003350!2.16e-08!5;UBERON:0000059!3.15e-08!11;UBERON:0000077!3.00e-07!130;UBERON:0001041!8.91e-07!98;UBERON:0000490!9.59e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.99e-51;19!UBERON:0006925;3.99e-51;19!UBERON:0002423;9.17e-39;25!UBERON:0002365;5.42e-30;31!UBERON:0002330;5.42e-30;31!UBERON:0002108;1.33e-27;4!UBERON:0002368;1.77e-26;33!UBERON:0000949;2.36e-19;43!UBERON:0005172;1.39e-11;52!UBERON:0005173;1.39e-11;52!UBERON:0001007;5.68e-11;81!UBERON:0002417;3.42e-10;58!UBERON:0000916;3.42e-10;58!UBERON:0002530;4.49e-10;57!UBERON:0000160;3.94e-08;17 | |||
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|short_description=p25@APOB | |||
}} |
Revision as of 16:25, 12 September 2013
Short description: | p25@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_25_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -485bp_to_M12413_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.22e-46 | 12 |
endodermal cell | 2.25e-09 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.