FFCP PHASE1:Hg19::chr2:171673341..171673352,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2571|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4092|TSSclassifier=S|UniProt=|association_with_transcript=-69bp_to_ENST00000344257_5end|coexpression_cluster_id=C3|description=CAGE_peak_3_at_GAD1_5end|id=chr2:171673341..171673352,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;4.62e-07;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.26e-09,8|ontology_enrichment_development_v019=UBERON:0006601;7.08e-10;82!UBERON:0010122;1.06e-07;2|ontology_enrichment_disease=DOID:305!8.51e-17!106;DOID:0050687!4.62e-16!143;DOID:14566!1.60e-14!239;DOID:162!1.82e-14!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.80e-45!82;UBERON:0005743!2.17e-44!86;UBERON:0001049!2.50e-42!57;UBERON:0005068!2.50e-42!57;UBERON:0006241!2.50e-42!57;UBERON:0007135!2.50e-42!57;UBERON:0000073!3.41e-40!94;UBERON:0001016!3.41e-40!94;UBERON:0000955!3.21e-38!69;UBERON:0006238!3.21e-38!69;UBERON:0002780!2.26e-37!41;UBERON:0001890!2.26e-37!41;UBERON:0006240!2.26e-37!41;UBERON:0003080!4.29e-36!42;UBERON:0002616!5.76e-35!59;UBERON:0001893!7.31e-32!34;UBERON:0002020!7.86e-32!34;UBERON:0003528!7.86e-32!34;UBERON:0002791!9.26e-31!33;UBERON:0001869!1.25e-30!32;UBERON:0003075!2.50e-29!86;UBERON:0007284!2.50e-29!86;UBERON:0002346!4.72e-28!90;UBERON:0003056!6.63e-26!61;UBERON:0000956!3.22e-23!25;UBERON:0000203!3.22e-23!25;UBERON:0002619!2.78e-22!22;UBERON:0001950!1.84e-20!20;UBERON:0000033!7.77e-20!123;UBERON:0000153!3.98e-19!129;UBERON:0007811!3.98e-19!129;UBERON:0004121!7.18e-17!169;UBERON:0000924!1.71e-16!173;UBERON:0006601!1.71e-16!173;UBERON:0007023!7.37e-15!115;UBERON:0002420!3.52e-10!9;UBERON:0007245!3.52e-10!9;UBERON:0010009!3.52e-10!9;UBERON:0010011!3.52e-10!9;UBERON:0000454!3.52e-10!9;UBERON:0002308!5.17e-10!9;UBERON:0000125!5.17e-10!9;UBERON:0000025!1.10e-08!194;UBERON:0009663!2.98e-08!7;UBERON:0001737!6.27e-08!9;UBERON:0003076!7.99e-08!15;UBERON:0003057!7.99e-08!15;UBERON:0000064!1.21e-07!219;UBERON:0000200!1.47e-07!6;UBERON:0000477!1.70e-07!286;UBERON:0001871!3.34e-07!7;UBERON:0001894!7.28e-07!7;UBERON:0006222!7.28e-07!7;UBERON:0001872!7.43e-07!5|ontology_enrichment_uberon_v019=UBERON:0001869;2.72e-58;32!UBERON:0002791;2.56e-54;32!UBERON:0001893;1.40e-53;34!UBERON:0003528;8.83e-53;34!UBERON:0002020;8.83e-53;34!UBERON:0002619;2.29e-51;22!UBERON:0001950;4.79e-51;20!UBERON:0000956;8.56e-45;25!UBERON:0000203;8.56e-45;25!UBERON:0002780;1.65e-43;41!UBERON:0001890;1.65e-43;41!UBERON:0000073;2.56e-32;53!UBERON:0002616;2.56e-32;53!UBERON:0000955;4.82e-28;68!UBERON:0001017;1.63e-25;75!UBERON:0001016;1.04e-24;83!UBERON:0002420;1.04e-21;9!UBERON:0007245;1.04e-21;9!UBERON:0010009;1.04e-21;9!UBERON:0010011;1.04e-21;9!UBERON:0000454;1.04e-21;9!UBERON:0000200;2.01e-18;6!UBERON:0000125;7.79e-17;9!UBERON:0002308;7.79e-17;9!UBERON:0009663;2.17e-16;7!UBERON:0001872;2.41e-16;5!UBERON:0001871;5.89e-16;6!UBERON:0000369;4.67e-14;4!UBERON:0002435;4.67e-14;4!UBERON:0000204;4.67e-14;4!UBERON:0002021;4.50e-11;5!UBERON:0005383;7.52e-11;3!UBERON:0005382;7.52e-11;3!UBERON:0000349;1.56e-10;5!UBERON:0001870;8.03e-10;3!UBERON:0011216;1.90e-08;132!UBERON:0001873;1.06e-07;2!UBERON:0007023;2.56e-07;114!UBERON:0002771;3.33e-07;2!UBERON:0001876;4.62e-07;2!UBERON:0001897;6.58e-07;2!UBERON:0001875;6.58e-07;2!UBERON:0006514;6.58e-07;2!UBERON:0010225;6.58e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001869,6.18e-65,32;UBERON:0001017,7.23e-64,81;UBERON:0002780,2.32e-61,41;UBERON:0001890,2.32e-61,41;UBERON:0003080,2.32e-61,41;UBERON:0006240,2.32e-61,41;UBERON:0001893,8.72e-61,34;UBERON:0003528,1.56e-60,34;UBERON:0002020,1.56e-60,34;UBERON:0000073,7.18e-60,53;UBERON:0002616,7.18e-60,53;UBERON:0002791,7.96e-60,32;UBERON:0001049,8.49e-60,56;UBERON:0005068,8.49e-60,56;UBERON:0006241,8.49e-60,56;UBERON:0007135,8.49e-60,56;UBERON:0001016,1.65e-56,89;UBERON:0000955,3.85e-53,68;UBERON:0006238,3.85e-53,68;UBERON:0002619,2.32e-51,22;UBERON:0001950,4.72e-51,20;UBERON:0000956,8.66e-45,25;UBERON:0000203,8.66e-45,25;UBERON:0003056,1.23e-41,61;UBERON:0003075,1.77e-40,82;UBERON:0007284,1.77e-40,82;UBERON:0002346,3.57e-38,86;UBERON:0010371,5.55e-30,104;UBERON:0010314,1.06e-24,132;UBERON:0004121,1.39e-24,171;UBERON:0000924,1.39e-24,171;UBERON:0006601,1.39e-24,171;UBERON:0011216,2.66e-23,223;UBERON:0007023,5.54e-22,114;UBERON:0002420,9.38e-22,9;UBERON:0007245,9.38e-22,9;UBERON:0010009,9.38e-22,9;UBERON:0010011,9.38e-22,9;UBERON:0000454,9.38e-22,9;UBERON:0000200,1.90e-18,6;UBERON:0000125,8.01e-17,9;UBERON:0002308,8.01e-17,9;UBERON:0001872,1.79e-16,5;UBERON:0009663,2.21e-16,7;UBERON:0001871,5.32e-16,6;UBERON:0000025,3.73e-14,192;UBERON:0000369,4.04e-14,4;UBERON:0002435,4.04e-14,4;UBERON:0000204,4.04e-14,4;UBERON:0010082,4.04e-14,4;UBERON:0002021,5.74e-11,5;UBERON:0005383,6.84e-11,3;UBERON:0005382,6.84e-11,3;UBERON:0000349,1.38e-10,5;UBERON:0001870,8.05e-10,3;UBERON:0004111,1.68e-09,240;UBERON:0001873,1.02e-07,2;UBERON:0010122,1.02e-07,2;UBERON: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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2571 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4092 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-69bp_to_ENST00000344257_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_GAD1_5end | |||
|id=chr2:171673341..171673352,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;4.62e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.26e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.08e-10;82!UBERON:0010122;1.06e-07;2 | |||
|ontology_enrichment_disease=DOID:305!8.51e-17!106;DOID:0050687!4.62e-16!143;DOID:14566!1.60e-14!239;DOID:162!1.82e-14!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p3@GAD1 | |||
}} |
Revision as of 14:39, 12 September 2013
Short description: | p3@GAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GAD1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -69bp_to_ENST00000344257_5end |
EntrezGene: | GAD1 |
HGNC: | 4092 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.26e-09 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.