FFCP PHASE1:Hg19::chr19:5914187..5914198,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=828|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1487|TSSclassifier=S|UniProt=Q13938,Q96ET4|association_with_transcript=0bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end|description=CAGE_peak_2_at_CAPS_5end|id=chr19:5914187..5914198,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;1.29e-21;19!CL:0000244;6.34e-21;4!CL:0000731;6.34e-21;4!CL:0002577;4.08e-17;3!CL:0002536;2.85e-12;2!CL:0002602;1.66e-11;2!CL:0002537;4.61e-10;5!CL:0000138;1.59e-08;6!CL:0000346;5.93e-08;3!CL:1000428;5.93e-08;3!CL:0000313;4.71e-07;1|ontology_enrichment_celltype_v019_2=CL:0000349,9.51e-22,19;CL:0000244,7.25e-21,4;CL:0000731,7.25e-21,4;CL:0002577,5.22e-17,3;CL:0002536,2.85e-12,2;CL:0002602,1.38e-11,2;CL:0002537,3.17e-10,5;CL:0000058,1.70e-08,6;CL:0000138,1.70e-08,6;CL:0000346,5.64e-08,3;CL:1000428,5.64e-08,3;CL:0000313,4.58e-07,1|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2152;4.71e-07;1|ontology_enrichment_disease_v019_2=DOID:2152,4.58e-07,1|ontology_enrichment_uberon=UBERON:0007023!3.48e-13!115;UBERON:0005631!8.74e-13!14;UBERON:0000158!8.74e-13!14;UBERON:0003124!3.55e-09!7;UBERON:0000064!1.87e-08!219;UBERON:0000478!3.21e-08!24;UBERON:0002298!2.54e-07!8;UBERON:0004121!5.17e-07!169;UBERON:0000058!9.96e-07!26|ontology_enrichment_uberon_v019=UBERON:0000305;3.53e-19;7!UBERON:0005631;5.77e-19;10!UBERON:0000158;5.77e-19;10!UBERON:0000478;8.66e-17;24!UBERON:0000365;8.76e-17;5!UBERON:0001896;9.17e-17;3!UBERON:0005290;9.17e-17;3!UBERON:0005910;5.11e-14;6!UBERON:0001987;5.75e-13;4!UBERON:0006444;1.66e-11;2!UBERON:0001995;1.66e-11;2!UBERON:0004715;1.66e-11;2!UBERON:0002298;1.26e-08;6!UBERON:0002418;5.93e-08;3!UBERON:0004755;5.93e-08;3!UBERON:0000412;5.93e-08;3!UBERON:0001992;5.93e-08;3!UBERON:0000486;4.57e-07;12!UBERON:0004911;4.71e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.57e-30,14;UBERON:0000158,4.57e-30,14;UBERON:0000305,2.24e-19,7;UBERON:0004871,6.28e-17,8;UBERON:0000478,6.83e-17,24;UBERON:0001896,9.44e-17,3;UBERON:0005290,9.44e-17,3;UBERON:0010096,9.44e-17,3;UBERON:0000365,9.74e-17,5;UBERON:0005910,5.58e-14,6;UBERON:0001987,6.90e-13,4;UBERON:0004340,6.90e-13,4;UBERON:0003124,9.94e-13,7;UBERON:0006444,1.38e-11,2;UBERON:0001995,1.38e-11,2;UBERON:0004715,1.38e-11,2;UBERON:0006554,2.33e-11,47;UBERON:0001008,4.44e-11,48;UBERON:0004923,2.17e-09,66;UBERON:0002298,1.28e-08,6;UBERON:0002418,5.25e-08,3;UBERON:0004755,5.25e-08,3;UBERON:0000412,5.64e-08,3;UBERON:0001992,5.64e-08,3;UBERON:0004175,2.59e-07,25;UBERON:0004911,4.58e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,3.05817920982241,3.9565046734268,2.84662611808107,1.32558950291166,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,2.00535164254356,2.60723734129483,0.795285947051099,1.45990461090791,0.189069634328136,0.443458794925128,0,0.130979075497713,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0.408308342509787,0.368502951935304,2.47981874821837,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0,0,0.257640540045629,0.558350568994769,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.985143749731331,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,1.21251028578504,11.6504807657348,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80479845162965,0.462092022626489,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0.192444225451024,0,0,0.188287601553558,1.72202149068492,1.68471475667626,2.21715076768338,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,3.10367830158997,1.78178808499583,1.84296421259539,0,0.422008249231538,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=828 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1487 | |||
|TSSclassifier=S | |||
|UniProt=Q13938,Q96ET4 | |||
|association_with_transcript=0bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end | |||
|description=CAGE_peak_2_at_CAPS_5end | |||
|id=chr19:5914187..5914198,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.29e-21;19!CL:0000244;6.34e-21;4!CL:0000731;6.34e-21;4!CL:0002577;4.08e-17;3!CL:0002536;2.85e-12;2!CL:0002602;1.66e-11;2!CL:0002537;4.61e-10;5!CL:0000138;1.59e-08;6!CL:0000346;5.93e-08;3!CL:1000428;5.93e-08;3!CL:0000313;4.71e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.51e-22,19;CL:0000244,7.25e-21,4;CL:0000731,7.25e-21,4;CL:0002577,5.22e-17,3;CL:0002536,2.85e-12,2;CL:0002602,1.38e-11,2;CL:0002537,3.17e-10,5;CL:0000058,1.70e-08,6;CL:0000138,1.70e-08,6;CL:0000346,5.64e-08,3;CL:1000428,5.64e-08,3;CL:0000313,4.58e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;4.71e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,4.58e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.48e-13!115;UBERON:0005631!8.74e-13!14;UBERON:0000158!8.74e-13!14;UBERON:0003124!3.55e-09!7;UBERON:0000064!1.87e-08!219;UBERON:0000478!3.21e-08!24;UBERON:0002298!2.54e-07!8;UBERON:0004121!5.17e-07!169;UBERON:0000058!9.96e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.53e-19;7!UBERON:0005631;5.77e-19;10!UBERON:0000158;5.77e-19;10!UBERON:0000478;8.66e-17;24!UBERON:0000365;8.76e-17;5!UBERON:0001896;9.17e-17;3!UBERON:0005290;9.17e-17;3!UBERON:0005910;5.11e-14;6!UBERON:0001987;5.75e-13;4!UBERON:0006444;1.66e-11;2!UBERON:0001995;1.66e-11;2!UBERON:0004715;1.66e-11;2!UBERON:0002298;1.26e-08;6!UBERON:0002418;5.93e-08;3!UBERON:0004755;5.93e-08;3!UBERON:0000412;5.93e-08;3!UBERON:0001992;5.93e-08;3!UBERON:0000486;4.57e-07;12!UBERON:0004911;4.71e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.57e-30,14;UBERON:0000158,4.57e-30,14;UBERON:0000305,2.24e-19,7;UBERON:0004871,6.28e-17,8;UBERON:0000478,6.83e-17,24;UBERON:0001896,9.44e-17,3;UBERON:0005290,9.44e-17,3;UBERON:0010096,9.44e-17,3;UBERON:0000365,9.74e-17,5;UBERON:0005910,5.58e-14,6;UBERON:0001987,6.90e-13,4;UBERON:0004340,6.90e-13,4;UBERON:0003124,9.94e-13,7;UBERON:0006444,1.38e-11,2;UBERON:0001995,1.38e-11,2;UBERON:0004715,1.38e-11,2;UBERON:0006554,2.33e-11,47;UBERON:0001008,4.44e-11,48;UBERON:0004923,2.17e-09,66;UBERON:0002298,1.28e-08,6;UBERON:0002418,5.25e-08,3;UBERON:0004755,5.25e-08,3;UBERON:0000412,5.64e-08,3;UBERON:0001992,5.64e-08,3;UBERON:0004175,2.59e-07,25;UBERON:0004911,4.58e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,3.05817920982241,3.9565046734268,2.84662611808107,1.32558950291166,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,2.00535164254356,2.60723734129483,0.795285947051099,1.45990461090791,0.189069634328136,0.443458794925128,0,0.130979075497713,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0.408308342509787,0.368502951935304,2.47981874821837,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0,0,0.257640540045629,0.558350568994769,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.985143749731331,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,1.21251028578504,11.6504807657348,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80479845162965,0.462092022626489,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0.192444225451024,0,0,0.188287601553558,1.72202149068492,1.68471475667626,2.21715076768338,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,3.10367830158997,1.78178808499583,1.84296421259539,0,0.422008249231538,0,0,0,0.19924798825107,0,0,0,0,0,0.898683511473268,0,0,0.295930216910801,0,0,0,0.278304294485554,0,0,0,0,0.227586896570999,2.2882828526349,0,0,0,0,0,0,0,0,0.295547618953547,0.658156191461918,0,0,0.230850775511391,0,0,0,0,2.87101043758728,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0.0884575645033392,0,0,0,0,1.21322039365219,0,0.468528891450678,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,5.20679215005393,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0.137041924646751,0,0,0.195551382734803,0.561111741760736,0.85381197895741,0,0,0,0,0,0,0,0.135904206073614,0.836822770498666,0,0,0,0.273810757783986,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0,0,0.709251365692784,0.629455057619977,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.775697738169303,0.26446520348538,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0.886068179966986,0,0.250381861413,3.44045517414043,2.44043913381075,1.42821726765182,0,2.87454938312845,0,0,0,0,0,0,0,0,2.46223906857616,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0.380805212168795,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.484426936895553,0,0,0,0,0.231051332300676,0.381382095467167,0,0.198916222116275,0.150420656698515,0.20170506870352,0.781514011233092,0,0,0.739280431085226,0,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0,0,0,0,0.709618961301111,0,0,0.135939465953663,0.0657727735628491,0,1.55723962648897,0.39246546425257,0,0,0,0,0,0.643288897589907,0,0,0,0,0,0.17071847709395,0,0,0,0,1.27016115057279,4.1239236337929,0.31020638566432,0,4.69792813550728,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.339957450954573,0,0,0.371995018166751,2.31087814315709,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.426467963801962,0,0.0645889098360061,0,0.33639558774184,0.190941474834495,1.21270313374932,0.217716747896961,0,0,0.932388670104793,0.332660356546013,0,0,0,0,0,0.366724332548599,0.813792356631477,0,0,0 | |||
|short_description=p2@CAPS | |||
}} |
Revision as of 22:41, 11 September 2013
Short description: | p2@CAPS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CAPS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000222125, ENST00000452990, NM_004058, NM_080590, uc002mdt.2, uc002mdu.2_5end |
EntrezGene: | CAPS |
HGNC: | 1487 |
UniProt: | Q13938Q96ET4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.51e-22 | 19 |
transitional epithelial cell | 7.25e-21 | 4 |
urothelial cell | 7.25e-21 | 4 |
placental epithelial cell | 5.22e-17 | 3 |
amniotic epithelial cell | 2.85e-12 | 2 |
annulus pulposus cell | 1.38e-11 | 2 |
amnion mesenchymal stem cell | 3.17e-10 | 5 |
chondroblast | 1.70e-08 | 6 |
chondrocyte | 1.70e-08 | 6 |
hair follicle dermal papilla cell | 5.64e-08 | 3 |
stem cell of epidermis | 5.64e-08 | 3 |
serous secreting cell | 4.58e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.57e-30 | 14 |
membranous layer | 4.57e-30 | 14 |
amnion | 2.24e-19 | 7 |
somatic layer of lateral plate mesoderm | 6.28e-17 | 8 |
extraembryonic structure | 6.83e-17 | 24 |
medulla oblongata | 9.44e-17 | 3 |
myelencephalon | 9.44e-17 | 3 |
future myelencephalon | 9.44e-17 | 3 |
urothelium | 9.74e-17 | 5 |
transitional epithelium | 5.58e-14 | 6 |
placenta | 6.90e-13 | 4 |
allantois | 6.90e-13 | 4 |
chorion | 9.94e-13 | 7 |
annulus fibrosus | 1.38e-11 | 2 |
fibrocartilage | 1.38e-11 | 2 |
annulus fibrosus disci intervertebralis | 1.38e-11 | 2 |
urinary system structure | 2.33e-11 | 47 |
renal system | 4.44e-11 | 48 |
organ component layer | 2.17e-09 | 66 |
brainstem | 1.28e-08 | 6 |
cartilage tissue | 5.25e-08 | 3 |
skeletal tissue | 5.25e-08 | 3 |
dermal papilla | 5.64e-08 | 3 |
papillary layer of dermis | 5.64e-08 | 3 |
internal genitalia | 2.59e-07 | 25 |
epithelium of female gonad | 4.58e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 4.58e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.