FFCP PHASE1:Hg19::chr19:55720809..55720819,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5794|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9672|TSSclassifier=S|UniProt=C9JCH2,Q9HD43|association_with_transcript=54bp_to_ENST00000263434,ENST00000376350,NM_001161440,NM_002842,uc002qjq.2,uc002qjs.2,uc010esv.2_5end|coexpression_cluster_id=C25|description=CAGE_peak_3_at_PTPRH_5end|id=chr19:55720809..55720819,-|ontology_enrichment_celltype=CL:0000223!5.28e-09!59;CL:0000083!3.82e-08!4;CL:0000066!1.72e-07!254|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006242;1.18e-11;1!UBERON:0001045;4.91e-11;1|ontology_enrichment_disease=DOID:305!1.19e-17!106;DOID:299!2.25e-14!25;DOID:0050687!1.61e-13!143;DOID:4929!2.88e-08!2;DOID:3119!3.00e-08!14;DOID:1793!3.82e-08!4;DOID:3493!6.64e-08!2;DOID:4074!2.02e-07!2;DOID:4905!2.02e-07!2;DOID:3498!2.02e-07!2;DOID:162!2.47e-07!235;DOID:14566!4.97e-07!239|ontology_enrichment_disease_v019=DOID:4929;1.17e-20;2!DOID:299;7.67e-10;25!DOID:3119;5.68e-07;14|ontology_enrichment_disease_v019_2=DOID:4929,1.05e-20,2;DOID:299,7.89e-10,25;DOID:3119,5.80e-07,14|ontology_enrichment_uberon=UBERON:0005409!9.10e-38!35;UBERON:0000160!1.78e-28!27;UBERON:0004921!2.54e-23!129;UBERON:0004185!2.54e-23!129;UBERON:0001007!9.21e-21!155;UBERON:0001555!9.21e-21!155;UBERON:0007026!9.21e-21!155;UBERON:0004119!1.55e-19!169;UBERON:0000925!1.55e-19!169;UBERON:0006595!1.55e-19!169;UBERON:0000059!6.58e-15!11;UBERON:0000077!2.52e-14!130;UBERON:0002108!6.78e-14!14;UBERON:0002294!2.13e-12!7;UBERON:0001173!2.13e-12!7;UBERON:0004912!2.13e-12!7;UBERON:0009497!1.42e-11!25;UBERON:0000015!1.42e-11!25;UBERON:0002423!1.42e-11!25;UBERON:0006235!1.42e-11!25;UBERON:0004161!1.42e-11!25;UBERON:0004907!4.12e-11!5;UBERON:0009856!5.27e-11!26;UBERON:0002075!6.30e-11!18;UBERON:0000945!1.12e-10!8;UBERON:0010039!1.12e-10!8;UBERON:0009854!2.92e-10!23;UBERON:0001041!7.21e-10!98;UBERON:0001155!9.82e-10!9;UBERON:0007499!3.13e-09!25;UBERON:0002114!4.45e-09!12;UBERON:0003929!7.76e-09!54;UBERON:0005911!1.15e-08!82;UBERON:0005177!1.52e-08!107;UBERON:0008835!1.82e-08!22;UBERON:0003894!1.82e-08!22;UBERON:0002394!1.95e-08!4;UBERON:0003928!1.95e-08!4;UBERON:0001052!4.43e-08!4;UBERON:0001045!1.39e-07!11;UBERON:0000466!1.91e-07!126;UBERON:0005172!2.22e-07!55;UBERON:0005173!2.22e-07!55;UBERON:0000481!3.00e-07!347;UBERON:0003104!3.15e-07!238;UBERON:0009142!3.15e-07!238|ontology_enrichment_uberon_v019=UBERON:0005409;6.92e-51;22!UBERON:0000160;7.53e-44;17!UBERON:0002108;1.30e-32;4!UBERON:0004921;5.77e-31;33!UBERON:0000059;1.31e-22;11!UBERON:0001155;3.67e-18;9!UBERON:0002114;2.59e-14;2!UBERON:0002294;2.24e-13;7!UBERON:0001173;2.24e-13;7!UBERON:0001555;1.39e-11;54!UBERON:0004913;3.28e-11;1!UBERON:0003703;3.28e-11;1!UBERON:0001174;3.28e-11;1!UBERON:0004914;3.28e-11;1!UBERON:0001154;4.91e-11;1!UBERON:0001153;4.91e-11;1!UBERON:0009854;4.91e-11;1!UBERON:0002394;9.90e-11;4!UBERON:0003928;9.90e-11;4!UBERON:0001007;1.33e-09;81!UBERON:0000945;6.44e-09;5!UBERON:0010039;6.44e-09;5!UBERON:0004907;1.08e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.35e-53,25;UBERON:0000160,6.32e-44,17;UBERON:0002108,1.20e-32,4;UBERON:0000059,1.17e-22,11;UBERON:0001155,3.28e-18,9;UBERON:0002114,2.42e-14,2;UBERON:0004921,3.75e-12,118;UBERON:0000945,1.07e-11,8;UBERON:0010039,1.07e-11,8;UBERON:0001007,3.04e-11,145;UBERON:0001555,3.04e-11,145;UBERON:0007026,3.04e-11,145;UBERON:0004913,3.28e-11,1;UBERON:0003703,3.28e-11,1;UBERON:0001174,3.28e-11,1;UBERON:0004914,3.28e-11,1;UBERON:0001154,4.01e-11,1;UBERON:0001153,4.01e-11,1;UBERON:0001045,4.01e-11,1;UBERON:0002294,1.69e-10,9;UBERON:0001173,1.69e-10,9;UBERON:0004912,1.69e-10,9;UBERON:0004119,5.46e-10,160;UBERON:0000925,5.46e-10,160;UBERON:0006595,5.46e-10,160;UBERON:0004907,9.95e-09,5;UBERON:0002394,2.05e-07,6;UBERON:0003928,2.05e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49137296979728,0,0,0,0,0,0,0,0,0,0,0,0,0.199247988251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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5794 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9672 | |||
|TSSclassifier=S | |||
|UniProt=C9JCH2,Q9HD43 | |||
|association_with_transcript=54bp_to_ENST00000263434,ENST00000376350,NM_001161440,NM_002842,uc002qjq.2,uc002qjs.2,uc010esv.2_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_3_at_PTPRH_5end | |||
|id=chr19:55720809..55720819,- | |||
|ontology_enrichment_celltype=CL:0000223!5.28e-09!59;CL:0000083!3.82e-08!4;CL:0000066!1.72e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.18e-11;1!UBERON:0001045;4.91e-11;1 | |||
|ontology_enrichment_disease=DOID:305!1.19e-17!106;DOID:299!2.25e-14!25;DOID:0050687!1.61e-13!143;DOID:4929!2.88e-08!2;DOID:3119!3.00e-08!14;DOID:1793!3.82e-08!4;DOID:3493!6.64e-08!2;DOID:4074!2.02e-07!2;DOID:4905!2.02e-07!2;DOID:3498!2.02e-07!2;DOID:162!2.47e-07!235;DOID:14566!4.97e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:4929;1.17e-20;2!DOID:299;7.67e-10;25!DOID:3119;5.68e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,1.05e-20,2;DOID:299,7.89e-10,25;DOID:3119,5.80e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005409!9.10e-38!35;UBERON:0000160!1.78e-28!27;UBERON:0004921!2.54e-23!129;UBERON:0004185!2.54e-23!129;UBERON:0001007!9.21e-21!155;UBERON:0001555!9.21e-21!155;UBERON:0007026!9.21e-21!155;UBERON:0004119!1.55e-19!169;UBERON:0000925!1.55e-19!169;UBERON:0006595!1.55e-19!169;UBERON:0000059!6.58e-15!11;UBERON:0000077!2.52e-14!130;UBERON:0002108!6.78e-14!14;UBERON:0002294!2.13e-12!7;UBERON:0001173!2.13e-12!7;UBERON:0004912!2.13e-12!7;UBERON:0009497!1.42e-11!25;UBERON:0000015!1.42e-11!25;UBERON:0002423!1.42e-11!25;UBERON:0006235!1.42e-11!25;UBERON:0004161!1.42e-11!25;UBERON:0004907!4.12e-11!5;UBERON:0009856!5.27e-11!26;UBERON:0002075!6.30e-11!18;UBERON:0000945!1.12e-10!8;UBERON:0010039!1.12e-10!8;UBERON:0009854!2.92e-10!23;UBERON:0001041!7.21e-10!98;UBERON:0001155!9.82e-10!9;UBERON:0007499!3.13e-09!25;UBERON:0002114!4.45e-09!12;UBERON:0003929!7.76e-09!54;UBERON:0005911!1.15e-08!82;UBERON:0005177!1.52e-08!107;UBERON:0008835!1.82e-08!22;UBERON:0003894!1.82e-08!22;UBERON:0002394!1.95e-08!4;UBERON:0003928!1.95e-08!4;UBERON:0001052!4.43e-08!4;UBERON:0001045!1.39e-07!11;UBERON:0000466!1.91e-07!126;UBERON:0005172!2.22e-07!55;UBERON:0005173!2.22e-07!55;UBERON:0000481!3.00e-07!347;UBERON:0003104!3.15e-07!238;UBERON:0009142!3.15e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.92e-51;22!UBERON:0000160;7.53e-44;17!UBERON:0002108;1.30e-32;4!UBERON:0004921;5.77e-31;33!UBERON:0000059;1.31e-22;11!UBERON:0001155;3.67e-18;9!UBERON:0002114;2.59e-14;2!UBERON:0002294;2.24e-13;7!UBERON:0001173;2.24e-13;7!UBERON:0001555;1.39e-11;54!UBERON:0004913;3.28e-11;1!UBERON:0003703;3.28e-11;1!UBERON:0001174;3.28e-11;1!UBERON:0004914;3.28e-11;1!UBERON:0001154;4.91e-11;1!UBERON:0001153;4.91e-11;1!UBERON:0009854;4.91e-11;1!UBERON:0002394;9.90e-11;4!UBERON:0003928;9.90e-11;4!UBERON:0001007;1.33e-09;81!UBERON:0000945;6.44e-09;5!UBERON:0010039;6.44e-09;5!UBERON:0004907;1.08e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.35e-53,25;UBERON:0000160,6.32e-44,17;UBERON:0002108,1.20e-32,4;UBERON:0000059,1.17e-22,11;UBERON:0001155,3.28e-18,9;UBERON:0002114,2.42e-14,2;UBERON:0004921,3.75e-12,118;UBERON:0000945,1.07e-11,8;UBERON:0010039,1.07e-11,8;UBERON:0001007,3.04e-11,145;UBERON:0001555,3.04e-11,145;UBERON:0007026,3.04e-11,145;UBERON:0004913,3.28e-11,1;UBERON:0003703,3.28e-11,1;UBERON:0001174,3.28e-11,1;UBERON:0004914,3.28e-11,1;UBERON:0001154,4.01e-11,1;UBERON:0001153,4.01e-11,1;UBERON:0001045,4.01e-11,1;UBERON:0002294,1.69e-10,9;UBERON:0001173,1.69e-10,9;UBERON:0004912,1.69e-10,9;UBERON:0004119,5.46e-10,160;UBERON:0000925,5.46e-10,160;UBERON:0006595,5.46e-10,160;UBERON:0004907,9.95e-09,5;UBERON:0002394,2.05e-07,6;UBERON:0003928,2.05e-07,6 | |||
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|short_description=p3@PTPRH | |||
}} |
Revision as of 22:26, 11 September 2013
Short description: | p3@PTPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PTPRH_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 54bp_to_ENST00000263434, ENST00000376350, NM_001161440, NM_002842, uc002qjq.2, uc002qjs.2, uc010esv.2_5end |
EntrezGene: | PTPRH |
HGNC: | 9672 |
UniProt: | C9JCH2Q9HD43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.35e-53 | 25 |
intestine | 6.32e-44 | 17 |
small intestine | 1.20e-32 | 4 |
large intestine | 1.17e-22 | 11 |
colon | 3.28e-18 | 9 |
duodenum | 2.42e-14 | 2 |
subdivision of digestive tract | 3.75e-12 | 118 |
stomach | 1.07e-11 | 8 |
food storage organ | 1.07e-11 | 8 |
digestive system | 3.04e-11 | 145 |
digestive tract | 3.04e-11 | 145 |
primitive gut | 3.04e-11 | 145 |
hepatopancreatic ampulla | 3.28e-11 | 1 |
extrahepatic bile duct | 3.28e-11 | 1 |
common bile duct | 3.28e-11 | 1 |
duodenal papilla | 3.28e-11 | 1 |
vermiform appendix | 4.01e-11 | 1 |
caecum | 4.01e-11 | 1 |
midgut | 4.01e-11 | 1 |
biliary system | 1.69e-10 | 9 |
biliary tree | 1.69e-10 | 9 |
biliary bud | 1.69e-10 | 9 |
endoderm-derived structure | 5.46e-10 | 160 |
endoderm | 5.46e-10 | 160 |
presumptive endoderm | 5.46e-10 | 160 |
lower digestive tract | 9.95e-09 | 5 |
bile duct | 2.05e-07 | 6 |
digestive system duct | 2.05e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.05e-20 | 2 |
adenocarcinoma | 7.89e-10 | 25 |
gastrointestinal system cancer | 5.80e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.