FFCP PHASE1:Hg19::chr13:28543316..28543329,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1045|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=1806|TSSclassifier=S|UniProt=Q99626|association_with_transcript=0bp_to_NM_001265,uc001urv.2_5end|coexpression_cluster_id=C86|description=CAGE_peak_4_at_CDX2_5end|id=chr13:28543316..28543329,-|ontology_enrichment_celltype=CL:0002178!7.81e-09!3;CL:0000453!8.06e-09!5;CL:0002563!1.49e-07!4;CL:0002253!3.13e-07!2;CL:0000990!4.22e-07!8|ontology_enrichment_celltype_v019=CL:0002563;2.94e-16;4!CL:0002253;5.42e-15;2!CL:0002251;2.93e-08;20|ontology_enrichment_celltype_v019_2=CL:0002563,3.02e-16,4;CL:0002253,5.62e-15,2;CL:0002251,2.73e-08,20|ontology_enrichment_development_v019=UBERON:0001045;3.45e-08;1|ontology_enrichment_disease=DOID:305!4.56e-19!106;DOID:3119!3.28e-18!14;DOID:0050687!3.71e-17!143;DOID:162!3.36e-10!235;DOID:14566!8.92e-10!239;DOID:299!2.39e-09!25;DOID:4929!8.36e-07!2|ontology_enrichment_disease_v019=DOID:3119;9.22e-17;14!DOID:4929;4.78e-14;2!DOID:299;4.06e-09;25!DOID:3151;8.98e-08;1!DOID:3347;8.98e-08;1!DOID:3149;8.98e-08;1!DOID:1749;1.34e-07;14|ontology_enrichment_disease_v019_2=DOID:3119,1.15e-16,14;DOID:4929,5.65e-14,2;DOID:299,4.21e-09,25;DOID:305,4.12e-08,106;DOID:3347,7.59e-08,1;DOID:3151,8.12e-08,1;DOID:3149,8.12e-08,1;DOID:1749,1.19e-07,14|ontology_enrichment_uberon=UBERON:0005409!4.07e-40!35;UBERON:0000160!8.17e-37!27;UBERON:0002108!1.82e-20!14;UBERON:0004921!1.76e-19!129;UBERON:0004185!1.76e-19!129;UBERON:0001007!3.75e-19!155;UBERON:0001555!3.75e-19!155;UBERON:0007026!3.75e-19!155;UBERON:0000059!7.69e-17!11;UBERON:0004119!1.09e-16!169;UBERON:0000925!1.09e-16!169;UBERON:0006595!1.09e-16!169;UBERON:0002075!8.21e-16!18;UBERON:0002114!1.43e-15!12;UBERON:0004907!2.09e-15!5;UBERON:0001045!8.85e-15!11;UBERON:0000077!6.44e-14!130;UBERON:0002294!6.15e-13!7;UBERON:0001173!6.15e-13!7;UBERON:0004912!6.15e-13!7;UBERON:0001052!1.07e-12!4;UBERON:0001264!2.14e-12!10;UBERON:0003922!2.14e-12!10;UBERON:0003923!2.14e-12!10;UBERON:0003924!2.14e-12!10;UBERON:0003921!2.14e-12!10;UBERON:0001155!6.17e-12!9;UBERON:0003350!6.23e-10!5;UBERON:0004458!1.27e-08!49;UBERON:0001046!1.38e-08!19;UBERON:0002110!1.57e-08!3;UBERON:0006242!1.57e-08!3;UBERON:0002323!4.50e-08!46;UBERON:0001242!1.49e-07!4;UBERON:0001262!1.49e-07!4;UBERON:0004786!1.49e-07!4;UBERON:0004808!1.49e-07!4;UBERON:0001277!1.49e-07!4;UBERON:0001041!1.77e-07!98|ontology_enrichment_uberon_v019=UBERON:0005409;1.37e-63;22!UBERON:0000160;5.32e-62;17!UBERON:0000059;2.96e-39;11!UBERON:0004921;6.41e-38;33!UBERON:0004907;2.28e-34;5!UBERON:0001052;6.24e-28;4!UBERON:0001155;1.87e-27;9!UBERON:0002108;5.36e-22;4!UBERON:0001242;2.94e-16;4!UBERON:0001262;2.94e-16;4!UBERON:0004786;2.94e-16;4!UBERON:0004808;2.94e-16;4!UBERON:0001277;2.94e-16;4!UBERON:0001555;1.87e-15;54!UBERON:0001007;6.59e-11;81!UBERON:0002114;9.59e-10;2!UBERON:0000485;1.66e-09;7!UBERON:0003929;1.66e-09;7!UBERON:0003350;2.26e-08;8!UBERON:0001154;3.45e-08;1!UBERON:0001153;3.45e-08;1!UBERON:0009854;3.45e-08;1!UBERON:0004913;8.98e-08;1!UBERON:0003703;8.98e-08;1!UBERON:0001174;8.98e-08;1!UBERON:0004914;8.98e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.00e-62,17;UBERON:0005409,9.28e-56,25;UBERON:0000059,2.96e-39,11;UBERON:0004907,2.28e-34,5;UBERON:0001052,6.46e-28,4;UBERON:0001155,1.87e-27,9;UBERON:0002108,7.22e-22,4;UBERON:0001242,3.02e-16,4;UBERON:0001262,3.02e-16,4;UBERON:0004786,3.02e-16,4;UBERON:0004808,3.02e-16,4;UBERON:0001277,3.02e-16,4;UBERON:0004921,6.23e-15,118;UBERON:0001007,5.19e-13,145;UBERON:0001555,5.19e-13,145;UBERON:0007026,5.19e-13,145;UBERON:0001046,1.39e-12,19;UBERON:0004119,1.91e-11,160;UBERON:0000925,1.91e-11,160;UBERON:0006595,1.91e-11,160;UBERON:0002114,1.17e-09,2;UBERON:0003350,2.29e-08,8;UBERON:0001154,3.34e-08,1;UBERON:0001153,3.34e-08,1;UBERON:0001045,3.34e-08,1;UBERON:0004913,1.14e-07,1;UBERON:0003703,1.14e-07,1;UBERON:0001174,1.14e-07,1;UBERON:0004914,1.14e-07,1;UBERON:0000485,1.75e-07,9;UBERON:0011216,4.86e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464775771478074,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.50229475112993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.09758312263869,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21364814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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |||
|TSSclassifier=S | |||
|UniProt=Q99626 | |||
|association_with_transcript=0bp_to_NM_001265,uc001urv.2_5end | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_4_at_CDX2_5end | |||
|id=chr13:28543316..28543329,- | |||
|ontology_enrichment_celltype=CL:0002178!7.81e-09!3;CL:0000453!8.06e-09!5;CL:0002563!1.49e-07!4;CL:0002253!3.13e-07!2;CL:0000990!4.22e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.94e-16;4!CL:0002253;5.42e-15;2!CL:0002251;2.93e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.02e-16,4;CL:0002253,5.62e-15,2;CL:0002251,2.73e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.45e-08;1 | |||
|ontology_enrichment_disease=DOID:305!4.56e-19!106;DOID:3119!3.28e-18!14;DOID:0050687!3.71e-17!143;DOID:162!3.36e-10!235;DOID:14566!8.92e-10!239;DOID:299!2.39e-09!25;DOID:4929!8.36e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3119;9.22e-17;14!DOID:4929;4.78e-14;2!DOID:299;4.06e-09;25!DOID:3151;8.98e-08;1!DOID:3347;8.98e-08;1!DOID:3149;8.98e-08;1!DOID:1749;1.34e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.15e-16,14;DOID:4929,5.65e-14,2;DOID:299,4.21e-09,25;DOID:305,4.12e-08,106;DOID:3347,7.59e-08,1;DOID:3151,8.12e-08,1;DOID:3149,8.12e-08,1;DOID:1749,1.19e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005409!4.07e-40!35;UBERON:0000160!8.17e-37!27;UBERON:0002108!1.82e-20!14;UBERON:0004921!1.76e-19!129;UBERON:0004185!1.76e-19!129;UBERON:0001007!3.75e-19!155;UBERON:0001555!3.75e-19!155;UBERON:0007026!3.75e-19!155;UBERON:0000059!7.69e-17!11;UBERON:0004119!1.09e-16!169;UBERON:0000925!1.09e-16!169;UBERON:0006595!1.09e-16!169;UBERON:0002075!8.21e-16!18;UBERON:0002114!1.43e-15!12;UBERON:0004907!2.09e-15!5;UBERON:0001045!8.85e-15!11;UBERON:0000077!6.44e-14!130;UBERON:0002294!6.15e-13!7;UBERON:0001173!6.15e-13!7;UBERON:0004912!6.15e-13!7;UBERON:0001052!1.07e-12!4;UBERON:0001264!2.14e-12!10;UBERON:0003922!2.14e-12!10;UBERON:0003923!2.14e-12!10;UBERON:0003924!2.14e-12!10;UBERON:0003921!2.14e-12!10;UBERON:0001155!6.17e-12!9;UBERON:0003350!6.23e-10!5;UBERON:0004458!1.27e-08!49;UBERON:0001046!1.38e-08!19;UBERON:0002110!1.57e-08!3;UBERON:0006242!1.57e-08!3;UBERON:0002323!4.50e-08!46;UBERON:0001242!1.49e-07!4;UBERON:0001262!1.49e-07!4;UBERON:0004786!1.49e-07!4;UBERON:0004808!1.49e-07!4;UBERON:0001277!1.49e-07!4;UBERON:0001041!1.77e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.37e-63;22!UBERON:0000160;5.32e-62;17!UBERON:0000059;2.96e-39;11!UBERON:0004921;6.41e-38;33!UBERON:0004907;2.28e-34;5!UBERON:0001052;6.24e-28;4!UBERON:0001155;1.87e-27;9!UBERON:0002108;5.36e-22;4!UBERON:0001242;2.94e-16;4!UBERON:0001262;2.94e-16;4!UBERON:0004786;2.94e-16;4!UBERON:0004808;2.94e-16;4!UBERON:0001277;2.94e-16;4!UBERON:0001555;1.87e-15;54!UBERON:0001007;6.59e-11;81!UBERON:0002114;9.59e-10;2!UBERON:0000485;1.66e-09;7!UBERON:0003929;1.66e-09;7!UBERON:0003350;2.26e-08;8!UBERON:0001154;3.45e-08;1!UBERON:0001153;3.45e-08;1!UBERON:0009854;3.45e-08;1!UBERON:0004913;8.98e-08;1!UBERON:0003703;8.98e-08;1!UBERON:0001174;8.98e-08;1!UBERON:0004914;8.98e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.00e-62,17;UBERON:0005409,9.28e-56,25;UBERON:0000059,2.96e-39,11;UBERON:0004907,2.28e-34,5;UBERON:0001052,6.46e-28,4;UBERON:0001155,1.87e-27,9;UBERON:0002108,7.22e-22,4;UBERON:0001242,3.02e-16,4;UBERON:0001262,3.02e-16,4;UBERON:0004786,3.02e-16,4;UBERON:0004808,3.02e-16,4;UBERON:0001277,3.02e-16,4;UBERON:0004921,6.23e-15,118;UBERON:0001007,5.19e-13,145;UBERON:0001555,5.19e-13,145;UBERON:0007026,5.19e-13,145;UBERON:0001046,1.39e-12,19;UBERON:0004119,1.91e-11,160;UBERON:0000925,1.91e-11,160;UBERON:0006595,1.91e-11,160;UBERON:0002114,1.17e-09,2;UBERON:0003350,2.29e-08,8;UBERON:0001154,3.34e-08,1;UBERON:0001153,3.34e-08,1;UBERON:0001045,3.34e-08,1;UBERON:0004913,1.14e-07,1;UBERON:0003703,1.14e-07,1;UBERON:0001174,1.14e-07,1;UBERON:0004914,1.14e-07,1;UBERON:0000485,1.75e-07,9;UBERON:0011216,4.86e-07,223 | |||
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|short_description=p4@CDX2 | |||
}} |
Revision as of 01:54, 11 September 2013
Short description: | p4@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 0bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.02e-16 | 4 |
epithelial cell of large intestine | 5.62e-15 | 2 |
epithelial cell of alimentary canal | 2.73e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.00e-62 | 17 |
gastrointestinal system | 9.28e-56 | 25 |
large intestine | 2.96e-39 | 11 |
lower digestive tract | 2.28e-34 | 5 |
rectum | 6.46e-28 | 4 |
colon | 1.87e-27 | 9 |
small intestine | 7.22e-22 | 4 |
intestinal mucosa | 3.02e-16 | 4 |
wall of intestine | 3.02e-16 | 4 |
gastrointestinal system mucosa | 3.02e-16 | 4 |
gastrointestinal system epithelium | 3.02e-16 | 4 |
intestinal epithelium | 3.02e-16 | 4 |
subdivision of digestive tract | 6.23e-15 | 118 |
digestive system | 5.19e-13 | 145 |
digestive tract | 5.19e-13 | 145 |
primitive gut | 5.19e-13 | 145 |
hindgut | 1.39e-12 | 19 |
endoderm-derived structure | 1.91e-11 | 160 |
endoderm | 1.91e-11 | 160 |
presumptive endoderm | 1.91e-11 | 160 |
duodenum | 1.17e-09 | 2 |
epithelium of mucosa | 2.29e-08 | 8 |
vermiform appendix | 3.34e-08 | 1 |
caecum | 3.34e-08 | 1 |
midgut | 3.34e-08 | 1 |
hepatopancreatic ampulla | 1.14e-07 | 1 |
extrahepatic bile duct | 1.14e-07 | 1 |
common bile duct | 1.14e-07 | 1 |
duodenal papilla | 1.14e-07 | 1 |
simple columnar epithelium | 1.75e-07 | 9 |
organ system subdivision | 4.86e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.15e-16 | 14 |
tubular adenocarcinoma | 5.65e-14 | 2 |
adenocarcinoma | 4.21e-09 | 25 |
carcinoma | 4.12e-08 | 106 |
osteosarcoma | 7.59e-08 | 1 |
skin squamous cell carcinoma | 8.12e-08 | 1 |
keratoacanthoma | 8.12e-08 | 1 |
squamous cell carcinoma | 1.19e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.