FFCP PHASE1:Hg19::chr12:54379029..54379057,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3226|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5122|TSSclassifier=S|UniProt=Q9NYD6|association_with_transcript=59bp_to_ENST00000303460_5end|coexpression_cluster_id=C321|description=CAGE_peak_2_at_HOXC10_5end|id=chr12:54379029..54379057,+|ontology_enrichment_celltype=CL:0000153!1.88e-09!9;CL:0000447!1.88e-09!9;CL:0000188!2.62e-08!9;CL:0000035!6.88e-08!20;CL:0002570!2.72e-07!8;CL:1000507!3.34e-07!12;CL:1000494!3.34e-07!12;CL:0000136!3.42e-07!15;CL:1000449!5.49e-07!16;CL:1000497!6.37e-07!18;CL:0002518!6.37e-07!18;CL:0000667!6.99e-07!6;CL:0000058!6.99e-07!6;CL:0000138!6.99e-07!6|ontology_enrichment_celltype_v019=CL:0000153;2.51e-14;9!CL:0000447;2.51e-14;9!CL:0000680;1.14e-11;7!CL:0000138;3.70e-10;6!CL:0000188;1.39e-08;9!CL:0000327;8.33e-08;15!CL:1000507;9.40e-08;10!CL:1000494;9.40e-08;10!CL:0000499;1.92e-07;28!CL:0000056;3.11e-07;4!CL:0002564;7.97e-07;3!CL:0002594;9.89e-07;4|ontology_enrichment_celltype_v019_2=CL:0000153,2.16e-14,9;CL:0000447,2.16e-14,9;CL:0000058,3.19e-10,6;CL:0000138,3.19e-10,6;CL:0000188,1.24e-08,9;CL:0000327,7.68e-08,15;CL:1000507,9.84e-08,10;CL:1000494,9.84e-08,10;CL:0000499,1.88e-07,28;CL:0000515,2.86e-07,4;CL:0002564,6.99e-07,3|ontology_enrichment_development_v019=CL:0000515;3.11e-07;4|ontology_enrichment_disease=DOID:0050687!2.61e-08!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002113!2.71e-10!27;UBERON:0003918!2.71e-10!27;UBERON:0005095!2.71e-10!27;UBERON:0007687!2.71e-10!27;UBERON:0001013!3.70e-10!14;UBERON:0000489!1.05e-09!32;UBERON:0001737!1.18e-09!9;UBERON:0004876!3.43e-08!20;UBERON:0000080!4.33e-08!18;UBERON:0002120!4.33e-08!18;UBERON:0004875!4.33e-08!18;UBERON:0005721!4.33e-08!18;UBERON:0005754!4.33e-08!18;UBERON:0007297!4.33e-08!18;UBERON:0006555!1.24e-07!17;UBERON:0005103!1.24e-07!17;UBERON:0000083!1.24e-07!17;UBERON:0009201!1.24e-07!17;UBERON:0004819!1.24e-07!17;UBERON:0006553!1.24e-07!17;UBERON:0003074!1.24e-07!17;UBERON:0003060!1.24e-07!17;UBERON:0009773!3.34e-07!12;UBERON:0001231!3.34e-07!12;UBERON:0004810!3.34e-07!12;UBERON:0004211!5.49e-07!16;UBERON:0001285!5.49e-07!16;UBERON:0007684!5.49e-07!16;UBERON:0003220!5.49e-07!16;UBERON:0004208!5.49e-07!16|ontology_enrichment_uberon_v019=UBERON:0001134;1.30e-15;16!UBERON:0002036;1.30e-15;16!UBERON:0001737;9.78e-15;9!UBERON:0001557;9.78e-15;9!UBERON:0004905;1.20e-14;8!UBERON:0000982;1.20e-14;8!UBERON:0004770;1.20e-14;8!UBERON:0011135;1.57e-10;5!UBERON:0002216;1.57e-10;5!UBERON:0011134;1.57e-10;5!UBERON:0002209;1.57e-10;5!UBERON:0002213;1.57e-10;5!UBERON:0007844;1.57e-10;5!UBERON:0011138;1.57e-10;5!UBERON:0001130;1.57e-10;5!UBERON:0001066;1.57e-10;5!UBERON:0001468;1.57e-10;5!UBERON:0002113;6.33e-08;24!UBERON:0011143;6.33e-08;24!UBERON:0002204;7.91e-08;70!UBERON:0004211;9.40e-08;10!UBERON:0009773;9.40e-08;10!UBERON:0001231;9.40e-08;10!UBERON:0004810;9.40e-08;10!UBERON:0000489;2.38e-07;29!UBERON:0002385;2.50e-07;31!UBERON:0001015;2.50e-07;31!UBERON:0000383;2.50e-07;31!UBERON:0001013;7.90e-07;14!UBERON:0002242;7.97e-07;3!UBERON:0001310;9.89e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.01e-14,9;UBERON:0004905,1.06e-14,8;UBERON:0000982,1.06e-14,8;UBERON:0004770,1.06e-14,8;UBERON:0003104,5.30e-13,160;UBERON:0009142,5.30e-13,160;UBERON:0011135,1.38e-10,5;UBERON:0002216,1.38e-10,5;UBERON:0011134,1.38e-10,5;UBERON:0002209,1.38e-10,5;UBERON:0002213,1.38e-10,5;UBERON:0005856,1.38e-10,5;UBERON:0005866,1.38e-10,5;UBERON:0005863,1.38e-10,5;UBERON:0007844,1.38e-10,5;UBERON:0011138,1.38e-10,5;UBERON:0001130,1.38e-10,5;UBERON:0001066,1.38e-10,5;UBERON:0001468,1.38e-10,5;UBERON:0007503,1.19e-08,78;UBERON:0002113,2.63e-08,26;UBERON:0003918,2.63e-08,26;UBERON:0011143,2.63e-08,26;UBERON:0005095,2.63e-08,26;UBERON:0007687,2.63e-08,26;UBERON:0000489,9.66e-08,31;UBERON:0004810,9.84e-08,10;UBERON:0000486,1.38e-07,83;UBERON:0002329,2.38e-07,71;UBERON:0003059,2.38e-07,71;UBERON:0007282,2.38e-07,71;UBERON:0004290,2.38e-07,71;UBERON:0009618,2.38e-07,71;UBERON:0003077,3.62e-07,72;UBERON:0007285,3.62e-07,72;UBERON:0006555,5.24e-07,16;UBERON:0004819,5.24e-07,16;UBERON:0007524,5.43e-07,73;UBERON:0002242,6.99e-07,3;UBERON:0003068,6.99e-07,3;UBERON:0002328,6.99e-07,3;UBERON:0004880,6.99e-07,3;UBERON:0001013,7.61e-07,14|phase1_expression=0.363356758541113,0.214100523890983,0,3.00219895059391,0,0,7.59899634504932,2.52687949370732,8.61912573059467,0,0,0,0,23.5156070624089,20.2152399194029,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.86734389530676,8.02140657017423,3.91085601194224,8.74814541756209,4.37971383272372,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,8.44852317882041,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,4.78235777765763,3.8753384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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3226 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5122 | |||
|TSSclassifier=S | |||
|UniProt=Q9NYD6 | |||
|association_with_transcript=59bp_to_ENST00000303460_5end | |||
|coexpression_cluster_id=C321 | |||
|description=CAGE_peak_2_at_HOXC10_5end | |||
|id=chr12:54379029..54379057,+ | |||
|ontology_enrichment_celltype=CL:0000153!1.88e-09!9;CL:0000447!1.88e-09!9;CL:0000188!2.62e-08!9;CL:0000035!6.88e-08!20;CL:0002570!2.72e-07!8;CL:1000507!3.34e-07!12;CL:1000494!3.34e-07!12;CL:0000136!3.42e-07!15;CL:1000449!5.49e-07!16;CL:1000497!6.37e-07!18;CL:0002518!6.37e-07!18;CL:0000667!6.99e-07!6;CL:0000058!6.99e-07!6;CL:0000138!6.99e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.51e-14;9!CL:0000447;2.51e-14;9!CL:0000680;1.14e-11;7!CL:0000138;3.70e-10;6!CL:0000188;1.39e-08;9!CL:0000327;8.33e-08;15!CL:1000507;9.40e-08;10!CL:1000494;9.40e-08;10!CL:0000499;1.92e-07;28!CL:0000056;3.11e-07;4!CL:0002564;7.97e-07;3!CL:0002594;9.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.16e-14,9;CL:0000447,2.16e-14,9;CL:0000058,3.19e-10,6;CL:0000138,3.19e-10,6;CL:0000188,1.24e-08,9;CL:0000327,7.68e-08,15;CL:1000507,9.84e-08,10;CL:1000494,9.84e-08,10;CL:0000499,1.88e-07,28;CL:0000515,2.86e-07,4;CL:0002564,6.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000515;3.11e-07;4 | |||
|ontology_enrichment_disease=DOID:0050687!2.61e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002113!2.71e-10!27;UBERON:0003918!2.71e-10!27;UBERON:0005095!2.71e-10!27;UBERON:0007687!2.71e-10!27;UBERON:0001013!3.70e-10!14;UBERON:0000489!1.05e-09!32;UBERON:0001737!1.18e-09!9;UBERON:0004876!3.43e-08!20;UBERON:0000080!4.33e-08!18;UBERON:0002120!4.33e-08!18;UBERON:0004875!4.33e-08!18;UBERON:0005721!4.33e-08!18;UBERON:0005754!4.33e-08!18;UBERON:0007297!4.33e-08!18;UBERON:0006555!1.24e-07!17;UBERON:0005103!1.24e-07!17;UBERON:0000083!1.24e-07!17;UBERON:0009201!1.24e-07!17;UBERON:0004819!1.24e-07!17;UBERON:0006553!1.24e-07!17;UBERON:0003074!1.24e-07!17;UBERON:0003060!1.24e-07!17;UBERON:0009773!3.34e-07!12;UBERON:0001231!3.34e-07!12;UBERON:0004810!3.34e-07!12;UBERON:0004211!5.49e-07!16;UBERON:0001285!5.49e-07!16;UBERON:0007684!5.49e-07!16;UBERON:0003220!5.49e-07!16;UBERON:0004208!5.49e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.30e-15;16!UBERON:0002036;1.30e-15;16!UBERON:0001737;9.78e-15;9!UBERON:0001557;9.78e-15;9!UBERON:0004905;1.20e-14;8!UBERON:0000982;1.20e-14;8!UBERON:0004770;1.20e-14;8!UBERON:0011135;1.57e-10;5!UBERON:0002216;1.57e-10;5!UBERON:0011134;1.57e-10;5!UBERON:0002209;1.57e-10;5!UBERON:0002213;1.57e-10;5!UBERON:0007844;1.57e-10;5!UBERON:0011138;1.57e-10;5!UBERON:0001130;1.57e-10;5!UBERON:0001066;1.57e-10;5!UBERON:0001468;1.57e-10;5!UBERON:0002113;6.33e-08;24!UBERON:0011143;6.33e-08;24!UBERON:0002204;7.91e-08;70!UBERON:0004211;9.40e-08;10!UBERON:0009773;9.40e-08;10!UBERON:0001231;9.40e-08;10!UBERON:0004810;9.40e-08;10!UBERON:0000489;2.38e-07;29!UBERON:0002385;2.50e-07;31!UBERON:0001015;2.50e-07;31!UBERON:0000383;2.50e-07;31!UBERON:0001013;7.90e-07;14!UBERON:0002242;7.97e-07;3!UBERON:0001310;9.89e-07;4 | |||
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| |||
|short_description=p2@HOXC10 | |||
}} |
Revision as of 23:20, 10 September 2013
Short description: | p2@HOXC10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HOXC10_5end |
Coexpression cluster: | C321_synovial_anaplastic_maxillary_glassy_keratoacanthoma_rhabdomyosarcoma_small |
Association with transcript: | 59bp_to_ENST00000303460_5end |
EntrezGene: | HOXC10 |
HGNC: | 5122 |
UniProt: | Q9NYD6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.16e-14 | 9 |
carbohydrate secreting cell | 2.16e-14 | 9 |
chondroblast | 3.19e-10 | 6 |
chondrocyte | 3.19e-10 | 6 |
cell of skeletal muscle | 1.24e-08 | 9 |
extracellular matrix secreting cell | 7.68e-08 | 15 |
kidney tubule cell | 9.84e-08 | 10 |
nephron tubule epithelial cell | 9.84e-08 | 10 |
stromal cell | 1.88e-07 | 28 |
skeletal muscle myoblast | 2.86e-07 | 4 |
nucleus pulposus cell of intervertebral disc | 6.99e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.