FFCP PHASE1:Hg19::chr11:2016803..2016860,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283120|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=4713|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_BC010185_5end|coexpression_cluster_id=C227|description=CAGE_peak_4_at_H19_5end|id=chr11:2016803..2016860,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;1.07e-12;19!CL:0000188;5.33e-08;9|ontology_enrichment_celltype_v019_2=CL:0000349,9.70e-13,19;CL:0000188,4.66e-08,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!1.01e-10!238;UBERON:0009142!1.01e-10!238;UBERON:0004921!2.72e-10!129;UBERON:0004185!2.72e-10!129;UBERON:0004119!5.87e-10!169;UBERON:0000925!5.87e-10!169;UBERON:0006595!5.87e-10!169;UBERON:0005631!8.07e-10!14;UBERON:0000158!8.07e-10!14;UBERON:0001557!3.31e-09!19;UBERON:0001007!3.85e-09!155;UBERON:0001555!3.85e-09!155;UBERON:0007026!3.85e-09!155;UBERON:0000481!5.51e-09!347;UBERON:0001737!7.68e-09!9;UBERON:0000077!8.67e-09!130;UBERON:0000478!6.91e-08!24;UBERON:0004923!8.69e-08!57;UBERON:0003124!1.05e-07!7;UBERON:0001041!1.68e-07!98;UBERON:0000064!1.89e-07!219;UBERON:0000063!4.35e-07!97;UBERON:0002100!7.89e-07!216;UBERON:0000065!9.23e-07!53;UBERON:0009569!9.77e-07!113|ontology_enrichment_uberon_v019=UBERON:0001134;5.12e-16;16!UBERON:0002036;5.12e-16;16!UBERON:0000478;2.19e-12;24!UBERON:0001737;3.58e-12;9!UBERON:0001557;3.58e-12;9!UBERON:0005631;2.63e-09;10!UBERON:0000158;2.63e-09;10!UBERON:0004457;3.91e-07;9!UBERON:0000042;3.91e-07;9!UBERON:0002385;4.44e-07;31!UBERON:0001015;4.44e-07;31!UBERON:0000383;4.44e-07;31!UBERON:0003688;6.55e-07;6!UBERON:0002358;6.55e-07;6!UBERON:0003684;6.55e-07;6!UBERON:0001178;6.55e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.50e-14,14;UBERON:0000158,3.50e-14,14;UBERON:0000478,2.00e-12,24;UBERON:0001737,3.64e-12,9;UBERON:0003124,1.62e-10,7;UBERON:0001557,6.33e-10,19;UBERON:0001041,1.92e-08,87;UBERON:0004921,1.82e-07,118;UBERON:0003104,1.98e-07,160;UBERON:0009142,1.98e-07,160;UBERON:0004119,2.69e-07,160;UBERON:0000925,2.69e-07,160;UBERON:0006595,2.69e-07,160;UBERON:0004923,2.80e-07,66;UBERON:0002100,4.44e-07,199;UBERON:0003688,7.00e-07,6;UBERON:0002358,7.00e-07,6;UBERON:0003684,7.00e-07,6;UBERON:0001178,7.00e-07,6;UBERON:0009569,8.94e-07,112|phase1_expression=14.352591962374,4.06790995392868,3.52386010239928,10.007329835313,5.36353313312745,57.5743425906243,0,0,0,3.19454117451962,4.18680700783456,45.654246775206,60.4026380143159,1.11389717664042,2.31978163009541,0,0,0,0,0,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,4.18003532953405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,0,0.511450247374121,0,0,0.434539556882471,2.3858578411533,11.1926020169606,0.283604451492204,0,0.263504357079378,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.16745360156538,0,0,1.55605517699883,0.134710672069688,0.817309515567294,2.27036141467397,10.94734256512,0.468642863667593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.340296549480063,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,4.4153698290417,2.07322110030741,0.756962552626885,0,0,0,0,0,0,20.2304628068133,21.0730862597627,23.3780698986978,28.0146690740281,20.6985471887786,21.8288969582209,31.8201887257988,25.1163475360443,26.5475538293009,3.69077727312324,1.40241773803446,6.5851841813024,20.5812195939759,1.26755034821831,0,6.49868897349544,0,0,0,0.219500570817251,0,0,5.92566049014589,0.325808305310325,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,1.85871391755592,135.112779742469,2.46972101034231,0,0.710783897485092,3.95975936466715,0,0,0,0,0,0,0,0,0,7.96297186671686,23.0133481256429,10.5645968311538,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0.637938751653163,0,0,0,2.94459580125936,4.50153468953709,0.542530047399471,0,0.178428988797162,0,0.234282829985426,1.80567659836631,6.82222512167955,3.10419213877515,0,0.184369168541703,0,41.1182430671755,73.775836119334,0,0,0,82.4506994333826,139.805769188818,58.9661071992877,15.8788997004017,1.53461973288062,9.26178311629143,6.02254001501795,3.07024349440022,3.69964018630297,16.325987308949,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4120015221269,0.680374821106063,0.863663664408557,4.62681758070868,0.541892875087706,2.00675909541941,0,0,0,0,0,0,0,0,2.67906630284078,0.183138929636687,0.165018999841176,0,0.650060246036521,0,6.76695028044854,4.92955574766862,14.7363527737084,10.4755795088243,1.71872391789238,8.55598494093948,6.81813019328807,28.8463795495429,0,0,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,1.48863347743867,2.84741482246853,0.76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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283120 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4713 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_BC010185_5end | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_4_at_H19_5end | |||
|id=chr11:2016803..2016860,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.07e-12;19!CL:0000188;5.33e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.70e-13,19;CL:0000188,4.66e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.01e-10!238;UBERON:0009142!1.01e-10!238;UBERON:0004921!2.72e-10!129;UBERON:0004185!2.72e-10!129;UBERON:0004119!5.87e-10!169;UBERON:0000925!5.87e-10!169;UBERON:0006595!5.87e-10!169;UBERON:0005631!8.07e-10!14;UBERON:0000158!8.07e-10!14;UBERON:0001557!3.31e-09!19;UBERON:0001007!3.85e-09!155;UBERON:0001555!3.85e-09!155;UBERON:0007026!3.85e-09!155;UBERON:0000481!5.51e-09!347;UBERON:0001737!7.68e-09!9;UBERON:0000077!8.67e-09!130;UBERON:0000478!6.91e-08!24;UBERON:0004923!8.69e-08!57;UBERON:0003124!1.05e-07!7;UBERON:0001041!1.68e-07!98;UBERON:0000064!1.89e-07!219;UBERON:0000063!4.35e-07!97;UBERON:0002100!7.89e-07!216;UBERON:0000065!9.23e-07!53;UBERON:0009569!9.77e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;5.12e-16;16!UBERON:0002036;5.12e-16;16!UBERON:0000478;2.19e-12;24!UBERON:0001737;3.58e-12;9!UBERON:0001557;3.58e-12;9!UBERON:0005631;2.63e-09;10!UBERON:0000158;2.63e-09;10!UBERON:0004457;3.91e-07;9!UBERON:0000042;3.91e-07;9!UBERON:0002385;4.44e-07;31!UBERON:0001015;4.44e-07;31!UBERON:0000383;4.44e-07;31!UBERON:0003688;6.55e-07;6!UBERON:0002358;6.55e-07;6!UBERON:0003684;6.55e-07;6!UBERON:0001178;6.55e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.50e-14,14;UBERON:0000158,3.50e-14,14;UBERON:0000478,2.00e-12,24;UBERON:0001737,3.64e-12,9;UBERON:0003124,1.62e-10,7;UBERON:0001557,6.33e-10,19;UBERON:0001041,1.92e-08,87;UBERON:0004921,1.82e-07,118;UBERON:0003104,1.98e-07,160;UBERON:0009142,1.98e-07,160;UBERON:0004119,2.69e-07,160;UBERON:0000925,2.69e-07,160;UBERON:0006595,2.69e-07,160;UBERON:0004923,2.80e-07,66;UBERON:0002100,4.44e-07,199;UBERON:0003688,7.00e-07,6;UBERON:0002358,7.00e-07,6;UBERON:0003684,7.00e-07,6;UBERON:0001178,7.00e-07,6;UBERON:0009569,8.94e-07,112 | |||
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| |||
|short_description=p4@H19 | |||
}} |
Revision as of 17:08, 10 September 2013
Short description: | p4@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | 0bp_to_BC010185_5end |
EntrezGene: | H19 |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.70e-13 | 19 |
cell of skeletal muscle | 4.66e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.50e-14 | 14 |
membranous layer | 3.50e-14 | 14 |
extraembryonic structure | 2.00e-12 | 24 |
larynx | 3.64e-12 | 9 |
chorion | 1.62e-10 | 7 |
upper respiratory tract | 6.33e-10 | 19 |
foregut | 1.92e-08 | 87 |
subdivision of digestive tract | 1.82e-07 | 118 |
mesenchyme | 1.98e-07 | 160 |
entire embryonic mesenchyme | 1.98e-07 | 160 |
endoderm-derived structure | 2.69e-07 | 160 |
endoderm | 2.69e-07 | 160 |
presumptive endoderm | 2.69e-07 | 160 |
organ component layer | 2.80e-07 | 66 |
trunk | 4.44e-07 | 199 |
omentum | 7.00e-07 | 6 |
peritoneum | 7.00e-07 | 6 |
abdominal cavity | 7.00e-07 | 6 |
visceral peritoneum | 7.00e-07 | 6 |
subdivision of trunk | 8.94e-07 | 112 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.