FFCP PHASE1:Hg19::chr11:18417948..18417964,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3939|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6535|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc010rdd.1_5end|description=CAGE_peak_6_at_LDHA_5end|id=chr11:18417948..18417964,+|ontology_enrichment_celltype=CL:0002319!7.61e-10!25;CL:0000066!2.26e-08!254;CL:0000133!5.10e-07!59;CL:0000047!5.92e-07!8|ontology_enrichment_celltype_v019=CL:0002322;4.59e-16;5!CL:0002319;2.42e-11;25!CL:0002321;3.46e-09;15!CL:0000540;4.28e-08;6!CL:0000404;4.28e-08;6!CL:0000123;7.80e-08;2!CL:0000242;7.80e-08;2!CL:0000047;1.43e-07;2!CL:0000764;2.67e-07;2!CL:0000558;2.67e-07;2|ontology_enrichment_celltype_v019_2=CL:0002322,4.52e-16,5;CL:0000047,9.46e-14,8;CL:0000133,1.48e-11,59;CL:0002319,1.62e-11,25;CL:0000221,9.16e-09,72;CL:0000540,1.83e-08,6;CL:0000031,1.83e-08,6;CL:0000404,1.83e-08,6;CL:0000242,8.11e-08,2;CL:0000764,3.44e-07,2;CL:0000765,3.44e-07,2;CL:0000050,3.44e-07,2;CL:0000038,3.44e-07,2;CL:0000558,3.44e-07,2;CL:0000547,3.44e-07,2;CL:0000549,3.44e-07,2;CL:0000550,3.44e-07,2;CL:0000552,3.44e-07,2|ontology_enrichment_development_v019=CL:0000031;4.28e-08;6!CL:0000133;1.67e-07;59|ontology_enrichment_disease=DOID:14566!1.06e-19!239;DOID:162!5.03e-19!235;DOID:305!5.70e-17!106;DOID:0050687!1.27e-16!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.05e-10!94;UBERON:0001016!6.05e-10!94;UBERON:0005743!1.09e-09!86;UBERON:0001017!1.07e-08!82;UBERON:0000924!6.87e-07!173;UBERON:0006601!6.87e-07!173;UBERON:0003056!9.74e-07!61|ontology_enrichment_uberon_v019=UBERON:0003296;3.59e-07;4!UBERON:0010133;3.59e-07;4!UBERON:0001905;5.99e-07;2!UBERON:0002757;5.99e-07;2!UBERON:0010134;5.99e-07;2!UBERON:0005408;5.99e-07;2!UBERON:0001899;5.99e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0003296,4.67e-07,4;UBERON:0010133,4.67e-07,4;UBERON:0001905,6.30e-07,2;UBERON:0002757,6.30e-07,2;UBERON:0010134,6.30e-07,2;UBERON:0005408,6.30e-07,2;UBERON:0001899,6.30e-07,2|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,0,0,0,0,0.873765488520689,0.263766978228454,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0,1.14494394852423,0.684372125364421,1.12988375635323,0.152826811495903,0.246301768349837,0.393553906568396,0,0,0,0,0,0,0.232401601740905,0.284338464974843,0.293600439334847,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,1.31692042387539,0,0,0.205601498999509,0,0,0,0,0.668462741311041,0,0.221533894583621,0.270803863765016,0.128091319725675,0.260118695119756,0.822189523018381,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0.127986611154418,0,0,0.821127996921047,0.403213486449465,0,0.289648807765598,0,0.670700859703636,0,0,0,0.144846518960824,0,0,1.03988298880475,0.443458794925128,0.527008714158756,1.44076983047484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0.368502951935304,0,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0.150238058906597,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0.286804595389004,2.43947412259191,2.25300606146525,3.48581828608555,2.69518743039963,4.03713361401005,2.91981887260664,0,0,0,0,0,0.354920400119532,0.505754070234305,0.723033089650446,0.661763836394364,0.653638332277218,0.474541238222193,0.269662616320329,0.588664395376038,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0.882926198829301,1.47586126251736,0.514703430895577,0,0,0.201057944823262,0.185176890317059,0,0,1.44331342025273,0.34779121492523,0.117408694235822,0.288732895522148,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0.671928512795438,0.141775097242386,0.358234090811393,0.581267877027924,0,0,0.264145302039678,0,0,0,0.380987365753014,0.381988425558278,1.17217447210047,0,0.308482478109971,0.901029173531752,0,0,0.87192013766656,0.4400297149257,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,1.12085143993527,0,0,0,3.30323011489202,3.90419561572865,1.54657762555539,1.84267891867784,5.10351001322531,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0.106727557803444,0.303127571446259,0,0.604780586659361,0,0,0.280660094433074,0,0,0.321707842287215,0,0.154209693802656,0,0,0,0.232420756919918,1.81289174387433,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19259876645935,2.0914836081992,0.769350375349168,0.328014645699706,1.30151357865721,0.9273691048295,0.183138929636687,0.41254749960294,0,0,0,0,0,0.307007349452259,0,0,0.145016693914229,0.0852266274161009,0,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6535 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc010rdd.1_5end | |||
|description=CAGE_peak_6_at_LDHA_5end | |||
|id=chr11:18417948..18417964,+ | |||
|ontology_enrichment_celltype=CL:0002319!7.61e-10!25;CL:0000066!2.26e-08!254;CL:0000133!5.10e-07!59;CL:0000047!5.92e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.59e-16;5!CL:0002319;2.42e-11;25!CL:0002321;3.46e-09;15!CL:0000540;4.28e-08;6!CL:0000404;4.28e-08;6!CL:0000123;7.80e-08;2!CL:0000242;7.80e-08;2!CL:0000047;1.43e-07;2!CL:0000764;2.67e-07;2!CL:0000558;2.67e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.52e-16,5;CL:0000047,9.46e-14,8;CL:0000133,1.48e-11,59;CL:0002319,1.62e-11,25;CL:0000221,9.16e-09,72;CL:0000540,1.83e-08,6;CL:0000031,1.83e-08,6;CL:0000404,1.83e-08,6;CL:0000242,8.11e-08,2;CL:0000764,3.44e-07,2;CL:0000765,3.44e-07,2;CL:0000050,3.44e-07,2;CL:0000038,3.44e-07,2;CL:0000558,3.44e-07,2;CL:0000547,3.44e-07,2;CL:0000549,3.44e-07,2;CL:0000550,3.44e-07,2;CL:0000552,3.44e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000031;4.28e-08;6!CL:0000133;1.67e-07;59 | |||
|ontology_enrichment_disease=DOID:14566!1.06e-19!239;DOID:162!5.03e-19!235;DOID:305!5.70e-17!106;DOID:0050687!1.27e-16!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.05e-10!94;UBERON:0001016!6.05e-10!94;UBERON:0005743!1.09e-09!86;UBERON:0001017!1.07e-08!82;UBERON:0000924!6.87e-07!173;UBERON:0006601!6.87e-07!173;UBERON:0003056!9.74e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;3.59e-07;4!UBERON:0010133;3.59e-07;4!UBERON:0001905;5.99e-07;2!UBERON:0002757;5.99e-07;2!UBERON:0010134;5.99e-07;2!UBERON:0005408;5.99e-07;2!UBERON:0001899;5.99e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,4.67e-07,4;UBERON:0010133,4.67e-07,4;UBERON:0001905,6.30e-07,2;UBERON:0002757,6.30e-07,2;UBERON:0010134,6.30e-07,2;UBERON:0005408,6.30e-07,2;UBERON:0001899,6.30e-07,2 | |||
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| |||
|short_description=p6@LDHA | |||
}} |
Revision as of 17:00, 10 September 2013
Short description: | p6@LDHA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LDHA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010rdd.1_5end |
EntrezGene: | LDHA |
HGNC: | 6535 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.52e-16 | 5 |
neuronal stem cell | 9.46e-14 | 8 |
neurectodermal cell | 1.48e-11 | 59 |
neural cell | 1.62e-11 | 25 |
ectodermal cell | 9.16e-09 | 72 |
neuron | 1.83e-08 | 6 |
neuroblast | 1.83e-08 | 6 |
electrically signaling cell | 1.83e-08 | 6 |
Merkel cell | 8.11e-08 | 2 |
erythroid lineage cell | 3.44e-07 | 2 |
erythroblast | 3.44e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 3.44e-07 | 2 |
erythroid progenitor cell | 3.44e-07 | 2 |
reticulocyte | 3.44e-07 | 2 |
proerythroblast | 3.44e-07 | 2 |
basophilic erythroblast | 3.44e-07 | 2 |
polychromatophilic erythroblast | 3.44e-07 | 2 |
orthochromatic erythroblast | 3.44e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 4.67e-07 | 4 |
neuroendocrine gland | 4.67e-07 | 4 |
pineal body | 6.30e-07 | 2 |
regional part of epithalamus | 6.30e-07 | 2 |
secretory circumventricular organ | 6.30e-07 | 2 |
circumventricular organ | 6.30e-07 | 2 |
epithalamus | 6.30e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.