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MCL coexpression mm9:2084: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004177!1.18e-23!29;UBERON:0005057!1.18e-23!29;UBERON:0000077!3.91e-22!35;UBERON:0002193!4.24e-19!48;UBERON:0002405!4.24e-19!48;UBERON:0002390!5.46e-19!45;UBERON:0003061!5.46e-19!45;UBERON:0002370!7.28e-19!23;UBERON:0000974!7.28e-19!23;UBERON:0004807!7.28e-19!23;UBERON:0005058!7.28e-19!23;UBERON:0003351!7.28e-19!23;UBERON:0009113!7.28e-19!23;UBERON:0003295!7.28e-19!23;UBERON:0009722!7.28e-19!23;UBERON:0005562!7.28e-19!23;UBERON:0007690!7.28e-19!23;UBERON:0000065!6.70e-18!41;UBERON:0006562!7.41e-18!24;UBERON:0003408!7.41e-18!24;UBERON:0001557!7.41e-18!24;UBERON:0001042!7.41e-18!24;UBERON:0008814!7.41e-18!24;UBERON:0009145!7.41e-18!24;UBERON:0001004!2.66e-17!42;UBERON:0000072!2.75e-15!27;UBERON:0000063!6.87e-12!35;UBERON:0001041!1.17e-11!80;UBERON:0007811!3.36e-10!36;UBERON:0003081!5.66e-10!87;UBERON:0005911!1.02e-08!69;UBERON:0000153!9.20e-08!43;UBERON:0004921!1.28e-07!114;UBERON:0001007!2.43e-07!116;UBERON:0001555!2.43e-07!116;UBERON:0007026!2.43e-07!116;UBERON:0004119!4.51e-07!118;UBERON:0000925!4.51e-07!118;UBERON:0006595!4.51e-07!118;UBERON:0000926!8.38e-07!120;UBERON:0004120!8.38e-07!120;UBERON:0006603!8.38e-07!120
|ontology_enrichment_uberon=UBERON:0004177!1.18e-23!29;UBERON:0005057!1.18e-23!29;UBERON:0000077!3.91e-22!35;UBERON:0002193!4.24e-19!48;UBERON:0002405!4.24e-19!48;UBERON:0002390!5.46e-19!45;UBERON:0003061!5.46e-19!45;UBERON:0002370!7.28e-19!23;UBERON:0000974!7.28e-19!23;UBERON:0004807!7.28e-19!23;UBERON:0005058!7.28e-19!23;UBERON:0003351!7.28e-19!23;UBERON:0009113!7.28e-19!23;UBERON:0003295!7.28e-19!23;UBERON:0009722!7.28e-19!23;UBERON:0005562!7.28e-19!23;UBERON:0007690!7.28e-19!23;UBERON:0000065!6.70e-18!41;UBERON:0006562!7.41e-18!24;UBERON:0003408!7.41e-18!24;UBERON:0001557!7.41e-18!24;UBERON:0001042!7.41e-18!24;UBERON:0008814!7.41e-18!24;UBERON:0009145!7.41e-18!24;UBERON:0001004!2.66e-17!42;UBERON:0000072!2.75e-15!27;UBERON:0000063!6.87e-12!35;UBERON:0001041!1.17e-11!80;UBERON:0007811!3.36e-10!36;UBERON:0003081!5.66e-10!87;UBERON:0005911!1.02e-08!69;UBERON:0000153!9.20e-08!43;UBERON:0004921!1.28e-07!114;UBERON:0001007!2.43e-07!116;UBERON:0001555!2.43e-07!116;UBERON:0007026!2.43e-07!116;UBERON:0004119!4.51e-07!118;UBERON:0000925!4.51e-07!118;UBERON:0006595!4.51e-07!118;UBERON:0000926!8.38e-07!120;UBERON:0004120!8.38e-07!120;UBERON:0006603!8.38e-07!120
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,1.21364,0.704257,0.803568,0.96814,0.381467,0.162942,0.755749,0.790506,0.37041,0.81685,1.2551,0,1.02248,0.473993,0.352304,0.683591,1.39891,0.57409,0.815872,0.481455,0.620553,0.846564,0.906602,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,0.089443,0.460474,0.786577,1.10929,0.40068,0.478558,0.717547,1.04032,0.504971,0.0986756,0.675898,0.938241,0.744678,0.49007,0.539131,1.0041,0.875451,0.771943,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,4.84462,0.362446,1.20828,0.11855,0.129654,0.791209,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,1.34553,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.569254,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,0.0824127
}}
}}

Revision as of 20:53, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:73910344..73910364,+p@chr13:73910344..73910364
+
Mm9::chr8:15018891..15018906,-p@chr8:15018891..15018906
-
Mm9::chr8:15018922..15018940,-p@chr8:15018922..15018940
-
Mm9::chr9:42236236..42236246,-p9@Tbcel


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
T cell8.24e-0711
pro-T cell8.24e-0711
mature alpha-beta T cell8.35e-079
alpha-beta T cell8.35e-079
immature T cell8.35e-079
mature T cell8.35e-079
immature alpha-beta T cell8.35e-079

Uber Anatomy
Ontology termp-valuen
hemopoietic organ1.18e-2329
immune organ1.18e-2329
mixed endoderm/mesoderm-derived structure3.91e-2235
hemolymphoid system4.24e-1948
immune system4.24e-1948
hematopoietic system5.46e-1945
blood island5.46e-1945
thymus7.28e-1923
neck7.28e-1923
respiratory system epithelium7.28e-1923
hemolymphoid system gland7.28e-1923
pharyngeal epithelium7.28e-1923
thymic region7.28e-1923
pharyngeal gland7.28e-1923
entire pharyngeal arch endoderm7.28e-1923
thymus primordium7.28e-1923
early pharyngeal endoderm7.28e-1923
respiratory tract6.70e-1841
pharynx7.41e-1824
gland of gut7.41e-1824
upper respiratory tract7.41e-1824
chordate pharynx7.41e-1824
pharyngeal arch system7.41e-1824
pharyngeal region of foregut7.41e-1824
respiratory system2.66e-1742
segment of respiratory tract2.75e-1527
organ segment6.87e-1235
foregut1.17e-1180
craniocervical region3.36e-1036
lateral plate mesoderm5.66e-1087
endo-epithelium1.02e-0869
anterior region of body9.20e-0843
subdivision of digestive tract1.28e-07114
digestive system2.43e-07116
digestive tract2.43e-07116
primitive gut2.43e-07116
endoderm-derived structure4.51e-07118
endoderm4.51e-07118
presumptive endoderm4.51e-07118
mesoderm8.38e-07120
mesoderm-derived structure8.38e-07120
presumptive mesoderm8.38e-07120


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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