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MCL coexpression mm9:2965: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!1.12e-12!32;CL:0002032!1.12e-12!32;CL:0000037!1.12e-12!32;CL:0000566!1.12e-12!32;CL:0000837!1.12e-12!32;CL:0002031!4.58e-10!25;CL:0000049!1.75e-08!19;CL:0000738!9.61e-08!17;CL:0002087!9.61e-08!17;CL:0000763!4.27e-07!16
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!1.74e-20!45;UBERON:0003061!1.74e-20!45;UBERON:0002193!2.88e-20!48;UBERON:0002405!2.88e-20!48;UBERON:0004177!1.57e-11!29;UBERON:0005057!1.57e-11!29;UBERON:0002371!7.76e-10!16;UBERON:0002370!6.54e-09!23;UBERON:0000974!6.54e-09!23;UBERON:0004807!6.54e-09!23;UBERON:0005058!6.54e-09!23;UBERON:0003351!6.54e-09!23;UBERON:0009113!6.54e-09!23;UBERON:0003295!6.54e-09!23;UBERON:0009722!6.54e-09!23;UBERON:0005562!6.54e-09!23;UBERON:0007690!6.54e-09!23;UBERON:0003408!7.78e-09!24;UBERON:0001474!8.56e-09!22;UBERON:0004765!8.56e-09!22;UBERON:0001434!8.56e-09!22;UBERON:0006562!4.01e-08!24;UBERON:0001557!4.01e-08!24;UBERON:0001042!4.01e-08!24;UBERON:0008814!4.01e-08!24;UBERON:0009145!4.01e-08!24;UBERON:0001004!7.89e-08!42;UBERON:0000065!8.27e-08!41;UBERON:0002204!1.05e-07!32;UBERON:0001041!1.16e-07!80;UBERON:0000077!1.95e-07!35;UBERON:0003081!6.08e-07!87
}}
}}

Revision as of 19:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:27611253..27611309,-p1@Fam105a
Mm9::chr7:135561641..135561659,-p2@Rgs10
Mm9::chr7:135561668..135561706,-p1@Rgs10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hematopoietic system1.74e-2045
blood island1.74e-2045
hemolymphoid system2.88e-2048
immune system2.88e-2048
hemopoietic organ1.57e-1129
immune organ1.57e-1129
bone marrow7.76e-1016
thymus6.54e-0923
neck6.54e-0923
respiratory system epithelium6.54e-0923
hemolymphoid system gland6.54e-0923
pharyngeal epithelium6.54e-0923
thymic region6.54e-0923
pharyngeal gland6.54e-0923
entire pharyngeal arch endoderm6.54e-0923
thymus primordium6.54e-0923
early pharyngeal endoderm6.54e-0923
gland of gut7.78e-0924
bone element8.56e-0922
skeletal element8.56e-0922
skeletal system8.56e-0922
pharynx4.01e-0824
upper respiratory tract4.01e-0824
chordate pharynx4.01e-0824
pharyngeal arch system4.01e-0824
pharyngeal region of foregut4.01e-0824
respiratory system7.89e-0842
respiratory tract8.27e-0841
musculoskeletal system1.05e-0732
foregut1.16e-0780
mixed endoderm/mesoderm-derived structure1.95e-0735
lateral plate mesoderm6.08e-0787


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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