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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.503060739080641,0.599534629246446,0.68365241605452,0.722442446448911,0.647271851422386,0.432423791187546,0.478479884988069,0.150442163711255,0.0800761525331175,0,0.275999829904427,0.335334952660016,0.49442570108986,0.0354470656487682,0.27185172917369,0.251297309647832,0.0602844726045145,0.164001280677683,0,0,0,0,0,0,0.338342898986103,0,0,0,0,0,0.473811433013977,0.2507456850819,0.360578780281239,0.590731788242362,0.472997122529885,0.353429852705638,0.0257492958628459,0.0209679878844212,0.0365927089968535,0,0,0,0,0,0,0.472910694544754,0.591225886078848,0.546134170286936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0,0,0,0,0,0,0,0.0570741246689917,0.034172782309542,0,0.116075941310988,0,0,0,0,0,0,0,0.0469568706916304,0.415613254532835,0.0300545597055,0,0,0,0,0,0,0,0,0,0,0.0794348942529555,0,0,0,0,0,0.205503975357192,0,0.178482233814886,0,0,0,0,0,0,0,0.0210591418683525,0.135950827703477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115506975370087,0.139890444252295,0.133877994534688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0273460503695069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0670132089181356,0.0389670579605192,0,0.0802151268900158,0.046916887530847,0.098514232005992,0.054906696497384,0,0,0,0,0,0,0,0,0.0368139433955263,0,0,0,0,0.0672592169170953,0,0,0,0.043440458408578,0.0321269055488328,0.0945053225286664,0.0345906816709774,0,0,0.094310383023109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324062347271422,0.0814866010703366,0.216318383811453,0.134747348791395,0.149244579172156,0.247414013377737,0.197118612954749,0.228909799457089,0.191115493074292,0,0,0,0,0,0,0.027471976078474,0,0,0,0,0,0,0,0,0,0,0,0,0.0216534965544966,0,0,0.572980606069087,0.113990974502719,0.170806499202338,0.181753088664001,0.351421998736124,0.445313361012433,0.447212848802531,0.545011804078145,0.611872180561124,0.451469690423291,0.52750593398973,0.407810521595013,0.687375277699204,0.769671944540937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0194374924235553,0.0269518943326477,0.0121269368029194,0,0,0,0,0,0,0,0,0,0,0.017637724668944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0432851562487011,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.503060739080641,0.599534629246446,0.68365241605452,0.722442446448911,0.647271851422386,0.432423791187546,0.478479884988069,0.150442163711255,0.0800761525331175,0,0.275999829904427,0.335334952660016,0.49442570108986,0.0354470656487682,0.27185172917369,0.251297309647832,0.0602844726045145,0.164001280677683,0,0,0,0,0,0,0.338342898986103,0,0,0,0,0,0.473811433013977,0.2507456850819,0.360578780281239,0.590731788242362,0.472997122529885,0.353429852705638,0.0257492958628459,0.0209679878844212,0.0365927089968535,0,0,0,0,0,0,0.472910694544754,0.591225886078848,0.546134170286936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0,0,0,0,0,0,0,0.0570741246689917,0.034172782309542,0,0.116075941310988,0,0,0,0,0,0,0,0.0469568706916304,0.415613254532835,0.0300545597055,0,0,0,0,0,0,0,0,0,0,0.0794348942529555,0,0,0,0,0,0.205503975357192,0,0.178482233814886,0,0,0,0,0,0,0,0.0210591418683525,0.135950827703477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115506975370087,0.139890444252295,0.133877994534688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0273460503695069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0670132089181356,0.0389670579605192,0,0.0802151268900158,0.046916887530847,0.098514232005992,0.054906696497384,0,0,0,0,0,0,0,0,0.0368139433955263,0,0,0,0,0.0672592169170953,0,0,0,0.043440458408578,0.0321269055488328,0.0945053225286664,0.0345906816709774,0,0,0.094310383023109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324062347271422,0.0814866010703366,0.216318383811453,0.134747348791395,0.149244579172156,0.247414013377737,0.197118612954749,0.228909799457089,0.191115493074292,0,0,0,0,0,0,0.027471976078474,0,0,0,0,0,0,0,0,0,0,0,0,0.0216534965544966,0,0,0.572980606069087,0.113990974502719,0.170806499202338,0.181753088664001,0.351421998736124,0.445313361012433,0.447212848802531,0.545011804078145,0.611872180561124,0.451469690423291,0.52750593398973,0.407810521595013,0.687375277699204,0.769671944540937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0194374924235553,0.0269518943326477,0.0121269368029194,0,0,0,0,0,0,0,0,0,0,0.017637724668944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0432851562487011,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!3.13e-16!32;CL:0002032!3.13e-16!32;CL:0000037!3.13e-16!32;CL:0000566!3.13e-16!32;CL:0000837!3.13e-16!32;CL:0000838!1.11e-14!12;CL:0002031!5.12e-14!25;CL:0000084!1.26e-13!11;CL:0000827!1.26e-13!11;CL:0000542!3.15e-13!13;CL:0000051!3.15e-13!13;CL:0000791!7.03e-12!9;CL:0000789!7.03e-12!9;CL:0002420!7.03e-12!9;CL:0002419!7.03e-12!9;CL:0000790!7.03e-12!9;CL:0002242!7.70e-12!16;CL:0000624!9.66e-11!8;CL:0002320!1.07e-10!46;CL:0000134!1.07e-10!46;CL:0000738!1.20e-10!17;CL:0002087!1.20e-10!17;CL:0000219!1.33e-08!54;CL:0000893!1.80e-08!6;CL:0002489!1.80e-08!6;CL:0000898!1.80e-08!6;CL:0000809!1.80e-08!6;CL:0000810!1.80e-08!6;CL:0000895!1.80e-08!6;CL:0000808!1.80e-08!6;CL:0000894!1.80e-08!6;CL:0000806!1.80e-08!6;CL:0000807!1.80e-08!6;CL:0000805!1.80e-08!6;CL:0002425!1.80e-08!6;CL:0002436!1.80e-08!6;CL:0002427!1.80e-08!6;CL:0002428!1.80e-08!6;CL:0002429!1.80e-08!6;CL:0002433!1.80e-08!6;CL:0002431!1.80e-08!6;CL:0002432!1.80e-08!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.96e-27!48;UBERON:0002405!1.96e-27!48;UBERON:0002390!7.08e-25!45;UBERON:0003061!7.08e-25!45;UBERON:0004177!5.78e-24!29;UBERON:0005057!5.78e-24!29;UBERON:0002370!6.00e-19!23;UBERON:0000974!6.00e-19!23;UBERON:0004807!6.00e-19!23;UBERON:0005058!6.00e-19!23;UBERON:0003351!6.00e-19!23;UBERON:0009113!6.00e-19!23;UBERON:0003295!6.00e-19!23;UBERON:0009722!6.00e-19!23;UBERON:0005562!6.00e-19!23;UBERON:0007690!6.00e-19!23;UBERON:0000077!3.10e-18!35;UBERON:0006562!7.52e-18!24;UBERON:0003408!7.52e-18!24;UBERON:0001557!7.52e-18!24;UBERON:0001042!7.52e-18!24;UBERON:0008814!7.52e-18!24;UBERON:0009145!7.52e-18!24;UBERON:0000072!4.66e-15!27;UBERON:0000065!3.10e-13!41;UBERON:0001004!1.02e-12!42;UBERON:0003081!5.80e-12!87;UBERON:0001041!6.43e-11!80;UBERON:0002384!1.07e-10!46;UBERON:0000063!4.86e-10!35;UBERON:0007811!1.41e-09!36;UBERON:0000490!1.57e-09!66;UBERON:0005911!2.46e-08!69;UBERON:0000926!2.88e-08!120;UBERON:0004120!2.88e-08!120;UBERON:0006603!2.88e-08!120;UBERON:0003929!6.14e-08!55;UBERON:0002368!2.95e-07!60;UBERON:0000153!5.34e-07!43
}}
}}

Revision as of 17:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:76992902..76992949,-p@chr10:76992902..76992949
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Mm9::chr11:87562310..87562339,-p@chr11:87562310..87562339
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Mm9::chr11:87562346..87562362,-p@chr11:87562346..87562362
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Mm9::chr11:87565186..87565207,-p@chr11:87565186..87565207
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell3.13e-1632
hematopoietic oligopotent progenitor cell3.13e-1632
hematopoietic stem cell3.13e-1632
angioblastic mesenchymal cell3.13e-1632
hematopoietic multipotent progenitor cell3.13e-1632
lymphoid lineage restricted progenitor cell1.11e-1412
hematopoietic lineage restricted progenitor cell5.12e-1425
T cell1.26e-1311
pro-T cell1.26e-1311
lymphocyte3.15e-1313
common lymphoid progenitor3.15e-1313
mature alpha-beta T cell7.03e-129
alpha-beta T cell7.03e-129
immature T cell7.03e-129
mature T cell7.03e-129
immature alpha-beta T cell7.03e-129
nucleate cell7.70e-1216
CD4-positive, alpha-beta T cell9.66e-118
connective tissue cell1.07e-1046
mesenchymal cell1.07e-1046
leukocyte1.20e-1017
nongranular leukocyte1.20e-1017
motile cell1.33e-0854
thymocyte1.80e-086
double negative thymocyte1.80e-086
naive T cell1.80e-086
double-positive, alpha-beta thymocyte1.80e-086
CD4-positive, alpha-beta thymocyte1.80e-086
naive thymus-derived CD4-positive, alpha-beta T cell1.80e-086
DN4 thymocyte1.80e-086
DN1 thymic pro-T cell1.80e-086
DN2 thymocyte1.80e-086
DN3 thymocyte1.80e-086
immature single positive thymocyte1.80e-086
early T lineage precursor1.80e-086
mature CD4 single-positive thymocyte1.80e-086
resting double-positive thymocyte1.80e-086
double-positive blast1.80e-086
CD69-positive double-positive thymocyte1.80e-086
CD69-positive, CD4-positive single-positive thymocyte1.80e-086
CD4-positive, CD8-intermediate double-positive thymocyte1.80e-086
CD24-positive, CD4 single-positive thymocyte1.80e-086

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.96e-2748
immune system1.96e-2748
hematopoietic system7.08e-2545
blood island7.08e-2545
hemopoietic organ5.78e-2429
immune organ5.78e-2429
thymus6.00e-1923
neck6.00e-1923
respiratory system epithelium6.00e-1923
hemolymphoid system gland6.00e-1923
pharyngeal epithelium6.00e-1923
thymic region6.00e-1923
pharyngeal gland6.00e-1923
entire pharyngeal arch endoderm6.00e-1923
thymus primordium6.00e-1923
early pharyngeal endoderm6.00e-1923
mixed endoderm/mesoderm-derived structure3.10e-1835
pharynx7.52e-1824
gland of gut7.52e-1824
upper respiratory tract7.52e-1824
chordate pharynx7.52e-1824
pharyngeal arch system7.52e-1824
pharyngeal region of foregut7.52e-1824
segment of respiratory tract4.66e-1527
respiratory tract3.10e-1341
respiratory system1.02e-1242
lateral plate mesoderm5.80e-1287
foregut6.43e-1180
connective tissue1.07e-1046
organ segment4.86e-1035
craniocervical region1.41e-0936
unilaminar epithelium1.57e-0966
endo-epithelium2.46e-0869
mesoderm2.88e-08120
mesoderm-derived structure2.88e-08120
presumptive mesoderm2.88e-08120
gut epithelium6.14e-0855
endocrine gland2.95e-0760
anterior region of body5.34e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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