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MCL coexpression mm9:499

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Phase1 CAGE Peaks

 Short description
Mm9::chr15:33790939..33790943,+p@chr15:33790939..33790943
+
Mm9::chr4:138387772..138387783,+p1@Pla2g2a
Mm9::chr4:138388571..138388598,+p@chr4:138388571..138388598
+
Mm9::chr4:138388796..138388811,+p3@ENSMUST00000147728
Mm9::chr4:138388841..138388850,+p5@ENSMUST00000147728
Mm9::chr4:138388852..138388863,+p4@ENSMUST00000147728
Mm9::chr4:138388869..138388884,+p2@ENSMUST00000147728
Mm9::chr4:138388916..138388925,+p7@ENSMUST00000147728
Mm9::chr4:138389179..138389192,+p1@ENSMUST00000147728
Mm9::chr4:138390835..138390853,+p@chr4:138390835..138390853
+
Mm9::chr4:138390983..138390988,+p@chr4:138390983..138390988
+
Mm9::chr6:56075077..56075082,+p@chr6:56075077..56075082
+
Mm9::chr7:134194033..134194045,+p@chr7:134194033..134194045
+
Mm9::chr7:134195225..134195237,+p@chr7:134195225..134195237
+
Mm9::chr7:28876815..28876836,+p@chr7:28876815..28876836
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007339binding of sperm to zona pellucida0.0312114896282304
GO:0035036sperm-egg recognition0.0312114896282304
GO:0009988cell-cell recognition0.0312114896282304
GO:0004623phospholipase A2 activity0.0312114896282304
GO:0007338single fertilization0.0382036845473835
GO:0008037cell recognition0.0382036845473835
GO:0004620phospholipase activity0.0382036845473835
GO:0009566fertilization0.0382036845473835
GO:0016298lipase activity0.0429529941524457
GO:0001558regulation of cell growth0.047595227214805
GO:0016042lipid catabolic process0.047595227214805
GO:0016049cell growth0.047595227214805
GO:0004091carboxylesterase activity0.047595227214805
GO:0008361regulation of cell size0.047595227214805
GO:0006644phospholipid metabolic process0.0481467517958884



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0063903
MA0004.10.239244
MA0006.10.118059
MA0007.10.227553
MA0009.10.623671
MA0014.10.000565425
MA0017.11.34761
MA0019.10.456268
MA0024.10.582844
MA0025.10.845702
MA0027.12.24512
MA0028.10.393672
MA0029.10.562703
MA0030.10.568779
MA0031.10.535959
MA0038.10.358622
MA0040.10.635404
MA0041.10.18185
MA0042.10.172351
MA0043.10.71494
MA0046.10.657417
MA0048.10.0239691
MA0050.10.270164
MA0051.10.366328
MA0052.10.642973
MA0055.10.229093
MA0056.10
MA0057.10.0903541
MA0058.10.167504
MA0059.10.176308
MA0060.10.071412
MA0061.10.0877629
MA0063.10
MA0066.10.921885
MA0067.10.953264
MA0068.10.0945752
MA0069.11.55187
MA0070.10.634186
MA0071.12.09537
MA0072.10.626238
MA0073.10.000127125
MA0074.10.318792
MA0076.10.148159
MA0077.10.605975
MA0078.10.395048
MA0081.10.193203
MA0083.10.714187
MA0084.11.27474
MA0087.10.673355
MA0088.10.143884
MA0089.10
MA0090.10.212772
MA0091.11.28859
MA0092.10.610874
MA0093.10.130107
MA0095.10
MA0098.10
MA0100.10.309116
MA0101.10.538493
MA0103.10.439015
MA0105.10.0373599
MA0106.11.03774
MA0107.10.138378
MA0108.20.476838
MA0109.10
MA0111.10.223614
MA0113.10.377232
MA0114.10.291992
MA0115.10.717599
MA0116.11.23725
MA0117.10.686999
MA0119.10.53953
MA0122.10.705806
MA0124.10.901619
MA0125.10.830088
MA0130.10
MA0131.10.452196
MA0132.10
MA0133.10
MA0135.10.749615
MA0136.10.891604
MA0139.10.0558308
MA0140.10.30902
MA0141.10.920442
MA0142.10.522654
MA0143.10.391481
MA0144.11.53402
MA0145.10.160233
MA0146.10.0657915
MA0147.10.31605
MA0148.10.252062
MA0149.10.18682
MA0062.20.0394542
MA0035.20.312946
MA0039.20.000419395
MA0138.20.445088
MA0002.21.21215
MA0137.20.912049
MA0104.20.229221
MA0047.20.357963
MA0112.23.46588
MA0065.20.321967
MA0150.12.6358
MA0151.10
MA0152.10.358055
MA0153.10.765498
MA0154.10.465695
MA0155.10.369691
MA0156.10.45173
MA0157.10.493416
MA0158.10
MA0159.10.101261
MA0160.11.30669
MA0161.10
MA0162.10.00143236
MA0163.10.00114117
MA0164.10.335886
MA0080.20.13897
MA0018.20.344133
MA0099.20.439458
MA0079.27.29589e-06
MA0102.21.32652
MA0258.13.96953
MA0259.10.0890842
MA0442.10
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