MCL coexpression mm9:1277
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr11:116611222..116611252,- | p1@ENSMUST00000106377 |
| Mm9::chr16:22622369..22622383,- | p@chr16:22622369..22622383 - |
| Mm9::chr4:106675318..106675331,+ | p@chr4:106675318..106675331 + |
| Mm9::chr7:113496188..113496202,- | p@chr7:113496188..113496202 - |
| Mm9::chr9:59797503..59797513,- | p3@Nr2e3 |
| Mm9::chr9:59797525..59797538,- | p2@Nr2e3 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0045872 | positive regulation of rhodopsin gene expression | 0.0212008325669304 |
| GO:0007468 | regulation of rhodopsin gene expression | 0.0212008325669304 |
| GO:0060041 | retina development in camera-type eye | 0.0317881805600894 |
| GO:0007205 | protein kinase C activation | 0.0317881805600894 |
| GO:0004143 | diacylglycerol kinase activity | 0.0317881805600894 |
| GO:0016439 | tRNA-pseudouridine synthase activity | 0.0317881805600894 |
| GO:0042461 | photoreceptor cell development | 0.0317881805600894 |
| GO:0009982 | pseudouridine synthase activity | 0.0317881805600894 |
| GO:0046530 | photoreceptor cell differentiation | 0.0329628101206219 |
| GO:0016866 | intramolecular transferase activity | 0.0353085843642717 |
| GO:0007200 | G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) | 0.0353085843642717 |
| GO:0032147 | activation of protein kinase activity | 0.0353085843642717 |
| GO:0048015 | phosphoinositide-mediated signaling | 0.0398582512683634 |
| GO:0019992 | diacylglycerol binding | 0.0398582512683634 |
| GO:0005496 | steroid binding | 0.0398582512683634 |
| GO:0003707 | steroid hormone receptor activity | 0.0398582512683634 |
| GO:0004879 | ligand-dependent nuclear receptor activity | 0.0398582512683634 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 1.36e-11 | 9 |
| epithelial cell of alimentary canal | 1.36e-11 | 9 |
| brush border epithelial cell | 2.06e-07 | 6 |
| gut absorptive cell | 2.06e-07 | 6 |
| absorptive cell | 2.06e-07 | 6 |
| enterocyte | 2.06e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 6.97e-32 | 31 |
| gastrointestinal system | 1.01e-25 | 47 |
| mucosa | 2.03e-15 | 15 |
| intestinal mucosa | 4.59e-13 | 13 |
| anatomical wall | 4.59e-13 | 13 |
| wall of intestine | 4.59e-13 | 13 |
| gastrointestinal system mucosa | 4.59e-13 | 13 |
| epithelium of mucosa | 1.36e-11 | 9 |
| gastrointestinal system epithelium | 1.36e-11 | 9 |
| intestinal epithelium | 1.36e-11 | 9 |
| simple columnar epithelium | 4.49e-09 | 11 |
| organ component layer | 3.71e-08 | 24 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.135108 |
| MA0004.1 | 0.536396 |
| MA0006.1 | 0.359699 |
| MA0007.1 | 0.52077 |
| MA0009.1 | 0.987341 |
| MA0014.1 | 0.304529 |
| MA0017.1 | 0.387481 |
| MA0019.1 | 0.800946 |
| MA0024.1 | 0.942716 |
| MA0025.1 | 1.22395 |
| MA0027.1 | 2.64231 |
| MA0028.1 | 0.370592 |
| MA0029.1 | 0.920529 |
| MA0030.1 | 0.927235 |
| MA0031.1 | 0.890871 |
| MA0038.1 | 0.686534 |
| MA0040.1 | 1.00009 |
| MA0041.1 | 0.457338 |
| MA0042.1 | 0.443591 |
| MA0043.1 | 1.08567 |
| MA0046.1 | 1.02391 |
| MA0048.1 | 0.161427 |
| MA0050.1 | 0.57678 |
| MA0051.1 | 0.695779 |
| MA0052.1 | 1.00829 |
| MA0055.1 | 0.0585191 |
| MA0056.1 | 0 |
| MA0057.1 | 0.149949 |
| MA0058.1 | 0.436487 |
| MA0059.1 | 1.14076 |
| MA0060.1 | 0.275911 |
| MA0061.1 | 0.307097 |
| MA0063.1 | 0 |
| MA0066.1 | 0.675169 |
| MA0067.1 | 1.33603 |
| MA0068.1 | 0.153907 |
| MA0069.1 | 1.00864 |
| MA0070.1 | 0.998765 |
| MA0071.1 | 0.575909 |
| MA0072.1 | 0.990133 |
| MA0073.1 | 0.000157319 |
| MA0074.1 | 0.638014 |
| MA0076.1 | 0.407465 |
| MA0077.1 | 0.968053 |
| MA0078.1 | 0.729877 |
| MA0081.1 | 0.473489 |
| MA0083.1 | 1.08487 |
| MA0084.1 | 1.66561 |
| MA0087.1 | 1.04109 |
| MA0088.1 | 0.358337 |
| MA0089.1 | 0 |
| MA0090.1 | 0.500693 |
| MA0091.1 | 0.55008 |
| MA0092.1 | 0.501022 |
| MA0093.1 | 0.379257 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.626021 |
| MA0101.1 | 0.458688 |
| MA0103.1 | 0.398766 |
| MA0105.1 | 0.199622 |
| MA0106.1 | 0.737893 |
| MA0107.1 | 0.392331 |
| MA0108.2 | 0.824407 |
| MA0109.1 | 0 |
| MA0111.1 | 0.515457 |
| MA0113.1 | 0.708789 |
| MA0114.1 | 0.304661 |
| MA0115.1 | 1.08851 |
| MA0116.1 | 0.359483 |
| MA0117.1 | 1.05576 |
| MA0119.1 | 0.459301 |
| MA0122.1 | 1.07591 |
| MA0124.1 | 1.28237 |
| MA0125.1 | 1.20757 |
| MA0130.1 | 0 |
| MA0131.1 | 0.796279 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.1226 |
| MA0136.1 | 0.658622 |
| MA0139.1 | 0.243463 |
| MA0140.1 | 0.625902 |
| MA0141.1 | 0.419361 |
| MA0142.1 | 0.876028 |
| MA0143.1 | 0.725672 |
| MA0144.1 | 0.307873 |
| MA0145.1 | 0.119202 |
| MA0146.1 | 0.0392287 |
| MA0147.1 | 0.858298 |
| MA0148.1 | 0.553294 |
| MA0149.1 | 0.464445 |
| MA0062.2 | 0.591842 |
| MA0035.2 | 0.630778 |
| MA0039.2 | 0.0823004 |
| MA0138.2 | 0.788113 |
| MA0002.2 | 0.689262 |
| MA0137.2 | 0.416331 |
| MA0104.2 | 0.723439 |
| MA0047.2 | 0.685741 |
| MA0112.2 | 0.119197 |
| MA0065.2 | 0.119561 |
| MA0150.1 | 1.29346 |
| MA0151.1 | 0 |
| MA0152.1 | 0.685852 |
| MA0153.1 | 1.13945 |
| MA0154.1 | 0.480757 |
| MA0155.1 | 0.132921 |
| MA0156.1 | 0.406559 |
| MA0157.1 | 0.843181 |
| MA0158.1 | 0 |
| MA0159.1 | 0.331229 |
| MA0160.1 | 0.556423 |
| MA0161.1 | 0 |
| MA0162.1 | 0.0465447 |
| MA0163.1 | 0.0423021 |
| MA0164.1 | 0.658997 |
| MA0080.2 | 0.393257 |
| MA0018.2 | 0.669032 |
| MA0099.2 | 0.781628 |
| MA0079.2 | 0.0121017 |
| MA0102.2 | 1.7182 |
| MA0258.1 | 0.290587 |
| MA0259.1 | 0.309517 |
| MA0442.1 | 0 |
