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MCL coexpression mm9:2306

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:40522548..40522574,+p3@Il18r1
Mm9::chr1:40522821..40522851,+p2@Il18r1
Mm9::chr1:40522914..40522923,+p6@Il18r1
Mm9::chr1:40523025..40523055,+p5@Il18r1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
respiratory system1.76e-1442
respiratory tract5.84e-1441
foregut1.48e-1180
digestive system1.65e-11116
digestive tract1.65e-11116
primitive gut1.65e-11116
endoderm-derived structure6.05e-11118
endoderm6.05e-11118
presumptive endoderm6.05e-11118
subdivision of digestive tract8.88e-11114
thoracic cavity element1.82e-1017
thoracic segment organ1.82e-1017
thoracic cavity1.82e-1017
thoracic segment of trunk1.82e-1017
respiratory primordium1.82e-1017
endoderm of foregut1.82e-1017
epithelial bud1.42e-0817
lung6.62e-0814
respiratory tube6.62e-0814
respiration organ6.62e-0814
pair of lungs6.62e-0814
lung primordium6.62e-0814
lung bud6.62e-0814
hemopoietic organ1.63e-0729
immune organ1.63e-0729
segment of respiratory tract1.72e-0727
anatomical space1.88e-0757


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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