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MCL coexpression mm9:1905

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:68861751..68861759,+p40@Ank3
Mm9::chr10:68861768..68861789,+p26@Ank3
Mm9::chr10:68880312..68880331,+p@chr10:68880312..68880331
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Mm9::chr10:68956350..68956357,+p@chr10:68956350..68956357
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
trunk region element1.67e-1079
organism subdivision1.75e-10150
foregut7.72e-1080
lung6.29e-0914
respiratory tube6.29e-0914
respiration organ6.29e-0914
pair of lungs6.29e-0914
lung primordium6.29e-0914
lung bud6.29e-0914
subdivision of trunk1.05e-0866
trunk1.09e-0790
eye1.12e-079
camera-type eye1.12e-079
simple eye1.12e-079
immature eye1.12e-079
ocular region1.12e-079
visual system1.12e-079
face1.12e-079
optic cup1.12e-079
optic vesicle1.12e-079
eye primordium1.12e-079
head1.61e-0713
subdivision of head2.44e-0711
epithelial bud3.25e-0717
thoracic cavity element3.56e-0717
thoracic segment organ3.56e-0717
thoracic cavity3.56e-0717
thoracic segment of trunk3.56e-0717
respiratory primordium3.56e-0717
endoderm of foregut3.56e-0717
ectodermal placode8.77e-0713
sense organ9.48e-0712
sensory system9.48e-0712
entire sense organ system9.48e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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