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Coexpression cluster:C1603

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Full id: C1603_Hepatocyte_colon_duodenum_small_gall_temporal_liver



Phase1 CAGE Peaks

Hg19::chr10:96500094..96500099,+p@chr10:96500094..96500099
+
Hg19::chr11:72492630..72492635,-p13@STARD10
Hg19::chr20:3052792..3052806,+p3@OXT
Hg19::chr6:25754961..25754980,+p1@SLC17A4
Hg19::chr6:25781321..25781354,+p@chr6:25781321..25781354
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0031895V1B vasopressin receptor binding0.00176610837712359
GO:0031855oxytocin receptor binding0.00176610837712359
GO:0050891body fluid osmoregulation0.00176610837712359
GO:0005185neurohypophyseal hormone activity0.00176610837712359
GO:0031894V1A vasopressin receptor binding0.00176610837712359
GO:0031893vasopressin receptor binding0.00176610837712359
GO:0005436sodium:phosphate symporter activity0.00313951715827406
GO:0018987osmoregulation0.00313951715827406
GO:0007567parturition0.00313951715827406
GO:0015114phosphate transmembrane transporter activity0.00494430280628434
GO:0005184neuropeptide hormone activity0.010591971141342
GO:0015296anion:cation symporter activity0.011473621593484
GO:0015103inorganic anion transmembrane transporter activity0.0192720292833527
GO:0001664G-protein-coupled receptor binding0.026200316927439
GO:0015294solute:cation symporter activity0.0268009883676938
GO:0050878regulation of body fluid levels0.0275458901971794
GO:0006814sodium ion transport0.0358555567995223
GO:0008509anion transmembrane transporter activity0.0402145638426299
GO:0005179hormone activity0.0402145638426299
GO:0015293symporter activity0.0425894721577773
GO:0048878chemical homeostasis0.0487516949656449
GO:0022414reproductive process0.0487516949656449



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell3.53e-1112
endopolyploid cell3.53e-1112
parenchymal cell3.53e-1112
polyploid cell3.53e-1112
hepatocyte3.53e-1112
Uber Anatomy
Ontology termp-valuen
intestine1.82e-2117
small intestine1.45e-154
epithelium of foregut-midgut junction3.36e-1525
anatomical boundary3.36e-1525
hepatobiliary system3.36e-1525
foregut-midgut junction3.36e-1525
septum transversum3.36e-1525
liver4.76e-1519
digestive gland4.76e-1519
liver bud4.76e-1519
gastrointestinal system1.25e-1425
abdomen element3.38e-1354
abdominal segment element3.38e-1354
hepatic diverticulum6.22e-1322
liver primordium6.22e-1322
digestive tract diverticulum2.38e-1223
abdominal segment of trunk1.01e-1160
abdomen1.01e-1160
epithelial sac2.54e-1125
sac7.22e-1126
subdivision of digestive tract7.31e-11118
gut epithelium9.34e-1154
digestive system8.73e-10145
digestive tract8.73e-10145
primitive gut8.73e-10145
epididymis4.50e-091
exocrine gland4.93e-0931
exocrine system4.93e-0931
colon9.81e-099
endoderm-derived structure1.28e-08160
endoderm1.28e-08160
presumptive endoderm1.28e-08160
endocrine system4.40e-0845
endocrine gland6.09e-0835
trunk region element1.02e-07101
large intestine3.15e-0711


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.12.24383
MA0004.10.626788
MA0006.10.452993
MA0007.10.606704
MA0009.11.11255
MA0014.11.45664
MA0017.10.496101
MA0019.10.784036
MA0024.11.00439
MA0025.11.24931
MA0027.12.73598
MA0028.10.470679
MA0029.11.02437
MA0030.11.01252
MA0031.10.945567
MA0038.10.736268
MA0040.11.03042
MA0041.11.55893
MA0042.10.612397
MA0043.11.11288
MA0046.14.05562
MA0048.11.08193
MA0050.10.613347
MA0051.10.731787
MA0052.11.03442
MA0055.10.0853006
MA0056.10
MA0057.10.189508
MA0058.10.523638
MA0059.10.522232
MA0060.10.321781
MA0061.10.291022
MA0063.10
MA0066.10.736721
MA0067.11.43651
MA0068.10.247962
MA0069.11.09737
MA0070.11.08584
MA0071.10.695094
MA0072.11.0812
MA0073.10.0469445
MA0074.10.730989
MA0076.10.540943
MA0077.11.07324
MA0078.10.836493
MA0081.10.522409
MA0083.11.12028
MA0084.11.62584
MA0087.11.07867
MA0088.10.412364
MA0089.10
MA0090.10.556637
MA0091.10.629594
MA0092.10.588959
MA0093.10.456342
MA0095.10
MA0098.10
MA0100.10.750974
MA0101.10.459973
MA0103.10.442769
MA0105.10.175503
MA0106.10.779931
MA0107.10.378225
MA0108.20.94238
MA0109.10
MA0111.10.5713
MA0113.10.797251
MA0114.10.973423
MA0115.11.35895
MA0116.10.382106
MA0117.11.1512
MA0119.10.504689
MA0122.11.17777
MA0124.11.31673
MA0125.11.23103
MA0130.10
MA0131.10.855546
MA0132.10
MA0133.10
MA0135.11.14377
MA0136.10.743749
MA0139.10.277033
MA0140.10.692258
MA0141.10.520334
MA0142.10.912455
MA0143.10.797437
MA0144.10.356507
MA0145.10.143698
MA0146.10.6031
MA0147.10.386018
MA0148.10.653474
MA0149.10.681935
MA0062.20.284987
MA0035.20.691506
MA0039.20.311551
MA0138.20.837782
MA0002.20.30855
MA0137.20.47779
MA0104.20.320919
MA0047.20.767096
MA0112.20.839774
MA0065.20.449243
MA0150.10.550239
MA0151.10
MA0152.10.69926
MA0153.11.21379
MA0154.10.172764
MA0155.10.130813
MA0156.10.480289
MA0157.10.883854
MA0158.10
MA0159.10.386729
MA0160.10.669748
MA0161.10
MA0162.10.81299
MA0163.14.46402
MA0164.10.810347
MA0080.20.456437
MA0018.20.781393
MA0099.20.699641
MA0079.20.340387
MA0102.21.66336
MA0258.10.345771
MA0259.10.395396
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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