FFCP PHASE1:Mm9::chr11:115336959..115337041,+: Difference between revisions
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{{FFCP|EntrezGene=276905|HGNC=|MCL_coexpression_id=116|UniProt=Q3UJZ3,A2A9X7|association_with_transcript=0bp_to_ENSMUST00000035240,ENSMUST00000136985,NM_177778,uc007mht.1_5end|description=CAGE_peak_1_at_Armc7_5end|id=chr11:115336959..115337041,+|ontology_enrichment_celltype=CL:0002371!1.79e-09!118;CL:0000144!8.10e-09!121;CL:0000012!8.10e-09!121;CL:0000548!3.68e-08!115;CL:0000004!3.68e-08!115;CL:0000255!3.68e-08!115;CL:0002321!6.82e-08!70;CL:0000220!6.82e-08!70;CL:0000117!2.14e-07!23;CL:0000337!2.14e-07!23;CL:0000723!2.18e-07!91;CL:0000048!2.18e-07!91|ontology_enrichment_celltype_v019_2=CL:0002321,6.82e-08,70;CL:0000117,2.14e-07,23;CL:0000337,2.14e-07,23;CL:0000723,2.18e-07,91;CL:0000048,2.18e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000064!3.44e-13!99;UBERON:0002193!1.25e-10!48;UBERON:0002390!1.10e-09!45;UBERON:0003061!1.10e-09!45;UBERON:0002370!1.78e-08!23;UBERON:0000974!1.78e-08!23;UBERON:0004807!1.78e-08!23;UBERON:0005058!1.78e-08!23;UBERON:0003351!1.78e-08!23;UBERON:0009113!1.78e-08!23;UBERON:0003295!1.78e-08!23;UBERON:0009722!1.78e-08!23;UBERON:0005562!1.78e-08!23;UBERON:0007690!1.78e-08!23;UBERON:0006562!3.50e-08!24;UBERON:0001557!3.50e-08!24;UBERON:0001042!3.50e-08!24;UBERON:0008814!3.50e-08!24;UBERON:0009145!3.50e-08!24;UBERON:0003408!6.85e-08!24;UBERON:0004177!7.37e-08!29;UBERON:0000072!2.10e-07!27;UBERON:0007023!8.00e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.25e-10,48;UBERON:0002405,1.25e-10,48;UBERON:0002390,1.10e-09,45;UBERON:0003061,1.10e-09,45;UBERON:0002050,7.39e-09,294;UBERON:0000923,7.55e-09,291;UBERON:0010316,7.55e-09,291;UBERON:0005291,7.55e-09,291;UBERON:0006598,7.55e-09,291;UBERON:0010317,7.55e-09,291;UBERON:0002532,7.55e-09,291;UBERON:0002370,1.78e-08,23;UBERON:0000974,1.78e-08,23;UBERON:0004807,1.78e-08,23;UBERON:0005058,1.78e-08,23;UBERON:0003351,1.78e-08,23;UBERON:0009113,1.78e-08,23;UBERON:0003295,1.78e-08,23;UBERON:0009722,1.78e-08,23;UBERON:0005562,1.78e-08,23;UBERON:0007690,1.78e-08,23;UBERON:0000077,2.80e-08,35;UBERON:0006562,3.50e-08,24;UBERON:0001557,3.50e-08,24;UBERON:0001042,3.50e-08,24;UBERON:0008814,3.50e-08,24;UBERON:0009145,3.50e-08,24;UBERON:0003408,6.85e-08,24;UBERON:0004177,7.37e-08,29;UBERON:0005057,7.37e-08,29;UBERON:0011216,1.88e-07,194;UBERON:0000072,2.10e-07,27;UBERON:0007023,8.00e-07,51|phase1_expression=3.84357233051505,8.72438519098403,10.4649825059593,9.0739263392049,6.51164448930251,8.39396359559449,7.70921713965235,22.5965816022758,14.2196609373183,14.7460651582856,8.73211637950075,9.01425396647301,27.7345182488553,21.5928393974924,3.99731714178795,5.26435695213547,2.79824751251259,10.7257136221801,12.066070157305,6.79023442876848,5.44277056966847,2.58156473122302,2.87319768052829,5.91971964335605,7.11168771308227,6.89078356938024,7.75371593086335,5.17130958446134,7.9809836171677,7.56090389279792,6.87364583031445,3.17515336729816,7.38077745101484,0,6.35473563452804,4.3221007793208,3.67504841272264,56.0832385187456,39.8481025707138,40.3113282859825,74.1171674919078,56.692775251551,46.6089938909907,6.6725313527056,6.69087746048796,8.07605709511399,13.3006528539167,3.05235218932625,5.4921545683618,4.86074747685709,2.93971485413261,1.43752564364972,7.3824346665404,5.80289713609076,4.36921938885203,4.3734104126111,5.15760191889762,4.12537673821954,10.1158230429799,11.6378015439847,8.87363964908651,4.74382344896785,1.77858959222228,30.5965903875676,32.6325899647102,28.419204597844,11.9840044207362,11.1423308543251,4.66603255388149,7.1553147315796,6.94072372459561,8.85518051651791,8.39300455616131,7.10446635446733,7.28425579738596,6.43453150627015,3.30347642998166,7.02280359468532,6.29786786350598,11.4741070325269,9.42322729104819,11.4600941522487,6.42120897703176,6.19038871034848,7.48711414106369,10.0173719061047,7.26095572075425,7.26957838718672,7.19398836665249,3.92972112555285,12.4641730141721,3.44169550792555,7.47968467078526,3.77792234146472,1.94932925234301,3.58421509677868,4.35377702408431,4.60161870960756,3.11743205523443,3.18005617059306,2.81686839553361,15.3991772897181,7.64415719119937,21.3320010945999,4.32982082022428,4.56047757855178,4.54972000513305,3.9964357901671,16.0541487861246,6.82833839698194,3.64319186208885,1.82679286987285,4.38169444786511,4.22023393547343,5.64425794251383,2.63899841792318,7.16865406429684,3.61498392299779,16.8076004870476,2.91180329905337,2.20841518460394,4.84875253135222,7.45567044872489,4.09893115816166,3.97948742945565,5.10914110417183,1.67741174308288,3.59941638596045,2.54140454146129,7.63932260964596,5.94750783664214,5.78010019719176,7.64827008846016,6.13717097592793,6.44142938134636,2.92034273521964,3.05518091550949,5.349499736234,4.54900965180614,6.10281382070775,5.07469727554544,2.75882525320168,5.04173963454978,5.72678307775717,5.03470093719826,4.35586648968489,4.96619140166563,3.88055056108524,4.74249584452253,4.16033376369202,3.69497360744293,5.69908904311695,2.50242524303038,6.61679116392116,4.52720700097476,4.57778813682534,2.808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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:276905 | |||
|HGNC= | |||
|MCL_coexpression_id=116 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UJZ3,uniprot:A2A9X7 | |||
|association_with_transcript=0bp_to_ENSMUST00000035240,ENSMUST00000136985,NM_177778,uc007mht.1_5end | |||
|cluster_id=chr11:115336959..115337041,+ | |||
|description=CAGE_peak_1_at_Armc7_5end | |||
|id=chr11:115336959..115337041,+ | |||
|ontology_enrichment_celltype=CL:0002371!1.79e-09!118;CL:0000144!8.10e-09!121;CL:0000012!8.10e-09!121;CL:0000548!3.68e-08!115;CL:0000004!3.68e-08!115;CL:0000255!3.68e-08!115;CL:0002321!6.82e-08!70;CL:0000220!6.82e-08!70;CL:0000117!2.14e-07!23;CL:0000337!2.14e-07!23;CL:0000723!2.18e-07!91;CL:0000048!2.18e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.82e-08,70;CL:0000117,2.14e-07,23;CL:0000337,2.14e-07,23;CL:0000723,2.18e-07,91;CL:0000048,2.18e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!3.44e-13!99;UBERON:0002193!1.25e-10!48;UBERON:0002390!1.10e-09!45;UBERON:0003061!1.10e-09!45;UBERON:0002370!1.78e-08!23;UBERON:0000974!1.78e-08!23;UBERON:0004807!1.78e-08!23;UBERON:0005058!1.78e-08!23;UBERON:0003351!1.78e-08!23;UBERON:0009113!1.78e-08!23;UBERON:0003295!1.78e-08!23;UBERON:0009722!1.78e-08!23;UBERON:0005562!1.78e-08!23;UBERON:0007690!1.78e-08!23;UBERON:0006562!3.50e-08!24;UBERON:0001557!3.50e-08!24;UBERON:0001042!3.50e-08!24;UBERON:0008814!3.50e-08!24;UBERON:0009145!3.50e-08!24;UBERON:0003408!6.85e-08!24;UBERON:0004177!7.37e-08!29;UBERON:0000072!2.10e-07!27;UBERON:0007023!8.00e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.25e-10,48;UBERON:0002405,1.25e-10,48;UBERON:0002390,1.10e-09,45;UBERON:0003061,1.10e-09,45;UBERON:0002050,7.39e-09,294;UBERON:0000923,7.55e-09,291;UBERON:0010316,7.55e-09,291;UBERON:0005291,7.55e-09,291;UBERON:0006598,7.55e-09,291;UBERON:0010317,7.55e-09,291;UBERON:0002532,7.55e-09,291;UBERON:0002370,1.78e-08,23;UBERON:0000974,1.78e-08,23;UBERON:0004807,1.78e-08,23;UBERON:0005058,1.78e-08,23;UBERON:0003351,1.78e-08,23;UBERON:0009113,1.78e-08,23;UBERON:0003295,1.78e-08,23;UBERON:0009722,1.78e-08,23;UBERON:0005562,1.78e-08,23;UBERON:0007690,1.78e-08,23;UBERON:0000077,2.80e-08,35;UBERON:0006562,3.50e-08,24;UBERON:0001557,3.50e-08,24;UBERON:0001042,3.50e-08,24;UBERON:0008814,3.50e-08,24;UBERON:0009145,3.50e-08,24;UBERON:0003408,6.85e-08,24;UBERON:0004177,7.37e-08,29;UBERON:0005057,7.37e-08,29;UBERON:0011216,1.88e-07,194;UBERON:0000072,2.10e-07,27;UBERON:0007023,8.00e-07,51 | |||
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| |||
|short_description=p1@Armc7 | |||
}} |
Revision as of 10:54, 5 August 2015
Short description: | p1@Armc7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Armc7_5end |
Coexpression cluster: | MCL_coexpression_mm9:116 |
Association with transcript: | 0bp_to_ENSMUST00000035240, ENSMUST00000136985, NM_177778, uc007mht.1_5end |
EntrezGene: | 276905 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.82e-08 | 70 |
CNS neuron (sensu Vertebrata) | 2.14e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.14e-07 | 23 |
somatic stem cell | 2.18e-07 | 91 |
multi fate stem cell | 2.18e-07 | 91 |