FFCP PHASE1:Mm9::chr4:130379298..130379314,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1087|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:130379298..130379314,+|id=chr4:130379298..130379314,+|ontology_enrichment_celltype=CL:0000117!4.88e-11!23;CL:0000337!4.88e-11!23;CL:0000221!7.73e-10!44;CL:0000133!7.73e-10!44;CL:0002319!1.04e-09!43;CL:0000055!1.75e-09!50;CL:0000393!5.88e-09!39;CL:0000211!5.88e-09!39;CL:0000540!9.70e-09!33;CL:0000047!9.70e-09!33;CL:0000031!9.70e-09!33;CL:0000404!9.70e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,8.24e-19,23;CL:0000337,8.24e-19,23;CL:0002319,2.08e-13,43;CL:0000393,3.31e-13,39;CL:0000211,3.31e-13,39;CL:0000221,5.14e-13,44;CL:0000133,5.14e-13,44;CL:0000723,1.87e-12,91;CL:0000048,1.87e-12,91;CL:0000540,3.64e-12,33;CL:0000047,3.64e-12,33;CL:0000031,3.64e-12,33;CL:0000404,3.64e-12,33;CL:0002194,1.70e-11,4;CL:0000766,1.70e-11,4;CL:0000234,1.70e-11,4;CL:0000576,1.70e-11,4;CL:0000235,1.70e-11,4;CL:0000864,1.70e-11,4;CL:0002009,1.70e-11,4;CL:0000040,1.70e-11,4;CL:0000559,1.70e-11,4;CL:0000034,2.46e-11,97;CL:0002092,2.05e-09,3;CL:0002540,2.05e-09,3;CL:0002321,6.56e-09,70;CL:0002612,1.33e-08,3;CL:0002613,2.25e-08,3;CL:0002476,8.56e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.69e-15!73;UBERON:0005743!6.69e-15!73;UBERON:0000073!6.74e-15!75;UBERON:0001016!6.74e-15!75;UBERON:0002346!3.65e-12!71;UBERON:0003075!3.65e-12!71;UBERON:0007284!3.65e-12!71;UBERON:0002020!5.14e-12!34;UBERON:0001049!7.09e-12!52;UBERON:0005068!7.09e-12!52;UBERON:0006241!7.09e-12!52;UBERON:0007135!7.09e-12!52;UBERON:0004121!2.79e-11!102;UBERON:0000924!2.79e-11!102;UBERON:0006601!2.79e-11!102;UBERON:0000955!1.63e-10!50;UBERON:0006238!1.63e-10!50;UBERON:0002616!4.16e-10!49;UBERON:0002791!5.65e-09!29;UBERON:0003528!5.65e-09!29;UBERON:0001893!5.65e-09!29;UBERON:0000033!3.92e-08!63;UBERON:0003080!1.85e-07!40;UBERON:0000025!1.86e-07!114;UBERON:0002780!3.56e-07!39;UBERON:0001890!3.56e-07!39;UBERON:0006240!3.56e-07!39;UBERON:0004111!6.42e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.04e-15,34;UBERON:0001017,2.84e-13,73;UBERON:0001948,8.37e-13,5;UBERON:0002315,8.37e-13,5;UBERON:0001016,8.83e-13,75;UBERON:0000073,4.94e-11,54;UBERON:0002240,1.30e-10,6;UBERON:0005174,1.30e-10,6;UBERON:0001137,1.30e-10,6;UBERON:0001049,3.99e-10,52;UBERON:0005068,3.99e-10,52;UBERON:0006241,3.99e-10,52;UBERON:0007135,3.99e-10,52;UBERON:0002371,6.85e-10,16;UBERON:0004121,5.21e-09,95;UBERON:0000924,5.21e-09,95;UBERON:0006601,5.21e-09,95;UBERON:0002257,1.33e-08,3;UBERON:0003528,3.08e-08,29;UBERON:0002791,3.08e-08,29;UBERON:0001893,3.08e-08,29;UBERON:0002420,1.04e-07,8;UBERON:0007245,1.04e-07,8;UBERON:0010009,1.04e-07,8;UBERON:0010011,1.04e-07,8;UBERON:0000454,1.04e-07,8;UBERON:0002346,1.54e-07,64;UBERON:0003075,1.54e-07,64;UBERON:0007284,1.54e-07,64;UBERON:0001474,8.35e-07,22;UBERON:0004765,8.35e-07,22;UBERON:0001434,8.35e-07,22|phase1_expression=0.160148847104794,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,0,0,0,0,0,1.27316895539409,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0.782391344348039,0.436050312760893,0,0,0.139986421625363,1.43752564364972,0,0,0,1.80081605225163,0.286533439938757,1.54701627683233,2.22548106945558,2.64495489636016,0,1.0165335962074,0,4.94944844504769,14.8329954385046,6.3943210345149,1.79760066311043,3.84218305321555,1.24427534770173,0.945041568321835,0.420649922702764,2.28520787523043,1.10434270475807,0.367472397644862,0.670918297127655,0,2.20231761998777,0.766124028511126,0.614426133024974,1.71452174049252,3.47653045689157,1.56274011167028,0.837548997004143,1.12552522006336,1.83357897332172,4.41942878210502,3.70166370077668,1.4911955666024,0.075726193333184,0.302286240427142,0,0,0,0,0.649776417447669,0,0.140444420131752,0.511290967734173,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0,0.506719730950197,0,0.11418387971906,0.258937883647172,0.742210695324124,0.346970653532272,1.52232739156071,0,0.60289056221049,0.470354828542819,0.502666365318702,0,0.144599356919912,0.884610551949874,0.485300549842228,0,0.484875253135222,0,0.292780797011547,0.41889341362691,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,0.628271760564322,0.521472960576829,0.255715457330331,1.24672826735736,0.324482526135515,0.509196819251581,0.373220911830279,0,0,0,0.229902104433473,0.180062129805349,0,0.204109497453984,0.12811372028485,0.0937017245597288,0,0.431135985865684,0,0.351902248327898,0,0,0.696504333044333,0.205782136407943,0,0,0,0,0,0.234526059981096,0.180062061461015,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0,0,0.164167464079095,0,0.146199987425332,0,0,0,0.823236899034275,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0.193952487167626,0,0.189709611372772,0.147610147979602,0.156998727841375,0,0.592905254174298,0,0,0,0.202860121388503,0.241177159752417,0.50925170356284,0,0.162135226775035,1.0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1087 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:130379298..130379314,+ | |||
|description=CAGE_peak_at_chr4:130379298..130379314,+ | |||
|id=chr4:130379298..130379314,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.88e-11!23;CL:0000337!4.88e-11!23;CL:0000221!7.73e-10!44;CL:0000133!7.73e-10!44;CL:0002319!1.04e-09!43;CL:0000055!1.75e-09!50;CL:0000393!5.88e-09!39;CL:0000211!5.88e-09!39;CL:0000540!9.70e-09!33;CL:0000047!9.70e-09!33;CL:0000031!9.70e-09!33;CL:0000404!9.70e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.24e-19,23;CL:0000337,8.24e-19,23;CL:0002319,2.08e-13,43;CL:0000393,3.31e-13,39;CL:0000211,3.31e-13,39;CL:0000221,5.14e-13,44;CL:0000133,5.14e-13,44;CL:0000723,1.87e-12,91;CL:0000048,1.87e-12,91;CL:0000540,3.64e-12,33;CL:0000047,3.64e-12,33;CL:0000031,3.64e-12,33;CL:0000404,3.64e-12,33;CL:0002194,1.70e-11,4;CL:0000766,1.70e-11,4;CL:0000234,1.70e-11,4;CL:0000576,1.70e-11,4;CL:0000235,1.70e-11,4;CL:0000864,1.70e-11,4;CL:0002009,1.70e-11,4;CL:0000040,1.70e-11,4;CL:0000559,1.70e-11,4;CL:0000034,2.46e-11,97;CL:0002092,2.05e-09,3;CL:0002540,2.05e-09,3;CL:0002321,6.56e-09,70;CL:0002612,1.33e-08,3;CL:0002613,2.25e-08,3;CL:0002476,8.56e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.69e-15!73;UBERON:0005743!6.69e-15!73;UBERON:0000073!6.74e-15!75;UBERON:0001016!6.74e-15!75;UBERON:0002346!3.65e-12!71;UBERON:0003075!3.65e-12!71;UBERON:0007284!3.65e-12!71;UBERON:0002020!5.14e-12!34;UBERON:0001049!7.09e-12!52;UBERON:0005068!7.09e-12!52;UBERON:0006241!7.09e-12!52;UBERON:0007135!7.09e-12!52;UBERON:0004121!2.79e-11!102;UBERON:0000924!2.79e-11!102;UBERON:0006601!2.79e-11!102;UBERON:0000955!1.63e-10!50;UBERON:0006238!1.63e-10!50;UBERON:0002616!4.16e-10!49;UBERON:0002791!5.65e-09!29;UBERON:0003528!5.65e-09!29;UBERON:0001893!5.65e-09!29;UBERON:0000033!3.92e-08!63;UBERON:0003080!1.85e-07!40;UBERON:0000025!1.86e-07!114;UBERON:0002780!3.56e-07!39;UBERON:0001890!3.56e-07!39;UBERON:0006240!3.56e-07!39;UBERON:0004111!6.42e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.04e-15,34;UBERON:0001017,2.84e-13,73;UBERON:0001948,8.37e-13,5;UBERON:0002315,8.37e-13,5;UBERON:0001016,8.83e-13,75;UBERON:0000073,4.94e-11,54;UBERON:0002240,1.30e-10,6;UBERON:0005174,1.30e-10,6;UBERON:0001137,1.30e-10,6;UBERON:0001049,3.99e-10,52;UBERON:0005068,3.99e-10,52;UBERON:0006241,3.99e-10,52;UBERON:0007135,3.99e-10,52;UBERON:0002371,6.85e-10,16;UBERON:0004121,5.21e-09,95;UBERON:0000924,5.21e-09,95;UBERON:0006601,5.21e-09,95;UBERON:0002257,1.33e-08,3;UBERON:0003528,3.08e-08,29;UBERON:0002791,3.08e-08,29;UBERON:0001893,3.08e-08,29;UBERON:0002420,1.04e-07,8;UBERON:0007245,1.04e-07,8;UBERON:0010009,1.04e-07,8;UBERON:0010011,1.04e-07,8;UBERON:0000454,1.04e-07,8;UBERON:0002346,1.54e-07,64;UBERON:0003075,1.54e-07,64;UBERON:0007284,1.54e-07,64;UBERON:0001474,8.35e-07,22;UBERON:0004765,8.35e-07,22;UBERON:0001434,8.35e-07,22 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,0,0,0,0,0,1.27316895539409,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0.782391344348039,0.436050312760893,0,0,0.139986421625363,1.43752564364972,0,0,0,1.80081605225163,0.286533439938757,1.54701627683233,2.22548106945558,2.64495489636016,0,1.0165335962074,0,4.94944844504769,14.8329954385046,6.3943210345149,1.79760066311043,3.84218305321555,1.24427534770173,0.945041568321835,0.420649922702764,2.28520787523043,1.10434270475807,0.367472397644862,0.670918297127655,0,2.20231761998777,0.766124028511126,0.614426133024974,1.71452174049252,3.47653045689157,1.56274011167028,0.837548997004143,1.12552522006336,1.83357897332172,4.41942878210502,3.70166370077668,1.4911955666024,0.075726193333184,0.302286240427142,0,0,0,0,0.649776417447669,0,0.140444420131752,0.511290967734173,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0,0.506719730950197,0,0.11418387971906,0.258937883647172,0.742210695324124,0.346970653532272,1.52232739156071,0,0.60289056221049,0.470354828542819,0.502666365318702,0,0.144599356919912,0.884610551949874,0.485300549842228,0,0.484875253135222,0,0.292780797011547,0.41889341362691,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,0.628271760564322,0.521472960576829,0.255715457330331,1.24672826735736,0.324482526135515,0.509196819251581,0.373220911830279,0,0,0,0.229902104433473,0.180062129805349,0,0.204109497453984,0.12811372028485,0.0937017245597288,0,0.431135985865684,0,0.351902248327898,0,0,0.696504333044333,0.205782136407943,0,0,0,0,0,0.234526059981096,0.180062061461015,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0,0,0.164167464079095,0,0.146199987425332,0,0,0,0.823236899034275,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0.193952487167626,0,0.189709611372772,0.147610147979602,0.156998727841375,0,0.592905254174298,0,0,0,0.202860121388503,0.241177159752417,0.50925170356284,0,0.162135226775035,1.09824565275233,10.0637744569148,0.744281895337007,0.312037673114561,0.252578877947112,0.179397413521912,0,0.184753190166605,0,0,0,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0.44292937929755,0.318909537314974,0.327726629431476,0.518054945597687,0.144649058581512,7.53956419696361,5.98296252200581,0,0,0.481651769963376,0.117211686592203,0.163934945376675,0,0.315508219416257,0.780877488593277,0.430846795465598,0.238968797952552,0,0,0,0.292255857911312,0,0.642642632843614,0.141940085208269,0,0.162886959353576,0,0,0,0,0.188605079755898,0,0,0,0,0.356497378384721,0,0,0,0,0,0.258717367565509,0,0,0.356737635204141,0.329098041204242,0,0,0.21183207086382,0,0,0,0.120625849856312,0,0,0,0.556275906031529,0.341741761595705,0,0,0.188368457004691,0.546776910884101,0.457556346413045,0,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0,0,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0.168956125490778,0.234714477291508,0.13020438484395,0.104859344425711,0,0.288030006257865,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0,0.100826185136841,0,0,0.116876902181569,0.226730383615211,0,0,0,0.579568782096571,0.375364950902364,0.183151624267265,0,0,2.82375921308533,0.460325236507177,1.71868654031819,0.859265911718438,0.685082519770642,1.5107877947794,0.675022500231806,1.35096360967266,0,1.55328093525546,0.103787347584177,0.399024873401031,0,0,0,0.183843508450014,0.44449345560323,0.206035057238894,0.64183841918363,0,1.01391719956096,0,0.37456602987953,0.192075457214608,0.17230640686684,0.476293691283074,0.347652977834566,0.38581844092741,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.290692833264657,0.658765662907314,0.0846146078916765,0.182927972872773,0,0.271608227691724,0,0.355905054372522,0.29551344712669,0.409231043169689,0.309873682371932,0,0.749431733813838,0.233931608445408,0.429742108096597,0.382576664137687,0.441182838239031,0.231867835620421 | |||
|short_description=p@chr4:130379298..130379314,+ | |||
}} |
Latest revision as of 20:21, 4 August 2015
Short description: | p@chr4:130379298..130379314, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:130379298..130379314, + |
Coexpression cluster: | MCL_coexpression_mm9:1087 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.24e-19 | 23 |
neuroblast (sensu Vertebrata) | 8.24e-19 | 23 |
neural cell | 2.08e-13 | 43 |
electrically responsive cell | 3.31e-13 | 39 |
electrically active cell | 3.31e-13 | 39 |
ectodermal cell | 5.14e-13 | 44 |
neurectodermal cell | 5.14e-13 | 44 |
somatic stem cell | 1.87e-12 | 91 |
multi fate stem cell | 1.87e-12 | 91 |
neuron | 3.64e-12 | 33 |
neuronal stem cell | 3.64e-12 | 33 |
neuroblast | 3.64e-12 | 33 |
electrically signaling cell | 3.64e-12 | 33 |
monopoietic cell | 1.70e-11 | 4 |
myeloid leukocyte | 1.70e-11 | 4 |
phagocyte | 1.70e-11 | 4 |
monocyte | 1.70e-11 | 4 |
macrophage | 1.70e-11 | 4 |
tissue-resident macrophage | 1.70e-11 | 4 |
macrophage dendritic cell progenitor | 1.70e-11 | 4 |
monoblast | 1.70e-11 | 4 |
promonocyte | 1.70e-11 | 4 |
stem cell | 2.46e-11 | 97 |
bone marrow cell | 2.05e-09 | 3 |
mesenchymal stem cell of the bone marrow | 2.05e-09 | 3 |
embryonic cell | 6.56e-09 | 70 |
neuron of the ventral spinal cord | 1.33e-08 | 3 |
striatum neuron | 2.25e-08 | 3 |
bone marrow macrophage | 8.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.04e-15 | 34 |
central nervous system | 2.84e-13 | 73 |
regional part of spinal cord | 8.37e-13 | 5 |
gray matter of spinal cord | 8.37e-13 | 5 |
nervous system | 8.83e-13 | 75 |
regional part of nervous system | 4.94e-11 | 54 |
spinal cord | 1.30e-10 | 6 |
dorsal region element | 1.30e-10 | 6 |
dorsum | 1.30e-10 | 6 |
neural tube | 3.99e-10 | 52 |
neural rod | 3.99e-10 | 52 |
future spinal cord | 3.99e-10 | 52 |
neural keel | 3.99e-10 | 52 |
bone marrow | 6.85e-10 | 16 |
ectoderm-derived structure | 5.21e-09 | 95 |
ectoderm | 5.21e-09 | 95 |
presumptive ectoderm | 5.21e-09 | 95 |
ventral horn of spinal cord | 1.33e-08 | 3 |
brain grey matter | 3.08e-08 | 29 |
regional part of telencephalon | 3.08e-08 | 29 |
telencephalon | 3.08e-08 | 29 |
basal ganglion | 1.04e-07 | 8 |
nuclear complex of neuraxis | 1.04e-07 | 8 |
aggregate regional part of brain | 1.04e-07 | 8 |
collection of basal ganglia | 1.04e-07 | 8 |
cerebral subcortex | 1.04e-07 | 8 |
neurectoderm | 1.54e-07 | 64 |
neural plate | 1.54e-07 | 64 |
presumptive neural plate | 1.54e-07 | 64 |
bone element | 8.35e-07 | 22 |
skeletal element | 8.35e-07 | 22 |
skeletal system | 8.35e-07 | 22 |