FFCP PHASE1:Mm9::chr2:24618702..24618716,-: Difference between revisions
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{{FFCP|EntrezGene=12287|HGNC=|MCL_coexpression_id=13|UniProt=A2AIS0,A2AIR8|association_with_transcript=-30bp_to_ENSMUST00000070864,NM_007579,uc008ipe.1,uc008ipf.1_5end|description=CAGE_peak_3_at_Cacna1b_5end|id=chr2:24618702..24618716,-|ontology_enrichment_celltype=CL:0000540!4.55e-20!33;CL:0000047!4.55e-20!33;CL:0000031!4.55e-20!33;CL:0000404!4.55e-20!33;CL:0000117!2.93e-18!23;CL:0000337!2.93e-18!23;CL:0000221!1.48e-17!44;CL:0000133!1.48e-17!44;CL:0002319!3.10e-17!43;CL:0000393!8.57e-15!39;CL:0000211!8.57e-15!39;CL:0000055!1.06e-12!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.98e-32,23;CL:0000337,1.98e-32,23;CL:0000540,4.05e-26,33;CL:0000047,4.05e-26,33;CL:0000031,4.05e-26,33;CL:0000404,4.05e-26,33;CL:0000393,6.74e-21,39;CL:0000211,6.74e-21,39;CL:0002319,3.08e-18,43;CL:0000221,1.19e-17,44;CL:0000133,1.19e-17,44;CL:0002321,2.04e-08,70;CL:0002609,2.43e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.85e-38!73;UBERON:0005743!1.85e-38!73;UBERON:0000073!1.35e-37!75;UBERON:0001016!1.35e-37!75;UBERON:0004121!4.35e-30!102;UBERON:0000924!4.35e-30!102;UBERON:0006601!4.35e-30!102;UBERON:0001049!7.96e-30!52;UBERON:0005068!7.96e-30!52;UBERON:0006241!7.96e-30!52;UBERON:0007135!7.96e-30!52;UBERON:0002346!1.94e-29!71;UBERON:0003075!1.94e-29!71;UBERON:0007284!1.94e-29!71;UBERON:0000955!9.99e-28!50;UBERON:0006238!9.99e-28!50;UBERON:0002616!3.17e-27!49;UBERON:0000033!2.76e-26!63;UBERON:0002020!7.99e-24!34;UBERON:0003080!2.58e-23!40;UBERON:0003056!1.03e-22!49;UBERON:0002780!1.43e-22!39;UBERON:0001890!1.43e-22!39;UBERON:0006240!1.43e-22!39;UBERON:0002791!8.79e-20!29;UBERON:0003528!8.79e-20!29;UBERON:0001893!8.79e-20!29;UBERON:0007811!2.13e-14!86;UBERON:0000956!1.73e-13!21;UBERON:0001869!1.73e-13!21;UBERON:0000203!1.73e-13!21;UBERON:0000153!1.41e-12!94;UBERON:0002619!8.21e-11!17;UBERON:0002021!7.92e-09!10;UBERON:0000411!7.92e-09!10;UBERON:0001950!7.92e-09!10;UBERON:0002420!1.52e-07!8;UBERON:0007245!1.52e-07!8;UBERON:0010009!1.52e-07!8;UBERON:0010011!1.52e-07!8;UBERON:0000454!1.52e-07!8;UBERON:0003076!6.11e-07!12;UBERON:0003057!6.11e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.93e-45,54;UBERON:0001017,6.53e-44,73;UBERON:0001049,1.66e-42,52;UBERON:0005068,1.66e-42,52;UBERON:0006241,1.66e-42,52;UBERON:0007135,1.66e-42,52;UBERON:0001016,2.19e-42,75;UBERON:0002020,6.37e-42,34;UBERON:0002346,1.85e-39,64;UBERON:0003075,1.85e-39,64;UBERON:0007284,1.85e-39,64;UBERON:0003528,1.94e-34,29;UBERON:0002791,1.94e-34,29;UBERON:0001893,1.94e-34,29;UBERON:0002616,4.72e-34,46;UBERON:0004121,1.33e-33,95;UBERON:0000924,1.33e-33,95;UBERON:0006601,1.33e-33,95;UBERON:0000955,4.16e-33,47;UBERON:0006238,4.16e-33,47;UBERON:0010371,4.62e-33,73;UBERON:0003080,5.42e-33,40;UBERON:0002780,1.10e-31,39;UBERON:0001890,1.10e-31,39;UBERON:0006240,1.10e-31,39;UBERON:0003056,1.22e-28,49;UBERON:0010314,1.11e-23,92;UBERON:0000956,8.08e-23,21;UBERON:0001869,8.08e-23,21;UBERON:0000203,8.08e-23,21;UBERON:0002619,6.89e-18,17;UBERON:0002021,5.69e-15,10;UBERON:0000411,5.69e-15,10;UBERON:0001950,5.69e-15,10;UBERON:0000025,3.98e-13,114;UBERON:0002420,1.31e-12,8;UBERON:0007245,1.31e-12,8;UBERON:0010009,1.31e-12,8;UBERON:0010011,1.31e-12,8;UBERON:0000454,1.31e-12,8;UBERON:0004111,1.52e-11,122;UBERON:0003076,2.11e-09,12;UBERON:0003057,2.11e-09,12;UBERON:0002240,2.29e-09,6;UBERON:0005174,2.29e-09,6;UBERON:0001137,2.29e-09,6;UBERON:0000369,1.14e-08,5;UBERON:0002435,1.14e-08,5;UBERON:0000204,1.14e-08,5;UBERON:0010082,1.14e-08,5;UBERON:0001948,2.17e-08,5;UBERON:0002315,2.17e-08,5;UBERON:0011216,2.45e-08,194;UBERON:0000119,2.54e-07,176;UBERON:0000483,5.80e-07,174;UBERON:0002950,9.87e-07,4;UBERON:0001891,9.87e-07,4;UBERON:0009616,9.87e-07,4;UBERON:0010286,9.87e-07,4|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,9.3065571995415,4.23192783417626,7.60597684207415,0.338844532069132,1.77858959222228,0,0,0,0.599200221036809,0.384218305321555,2.69592992002042,2.43010688997043,3.78584930432488,6.56997264128748,2.42955395046775,2.57230678351403,2.87536413054709,2.75765635983006,2.20231761998777,3.57524546638526,4.45458946443106,7.12185953743047,6.95306091378313,6.25096044668112,1.3959149950069,7.31591393041184,6.87592114995646,5.30331453852602,7.68807076315156,4.10078780815661,0,0.151143120213571,0,0,0,0,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0.753613202763113,0.470354828542819,0.125666591329675,0,0,0,0,0,0,0,4.09893115816166,6.91174132484402,0,0,0,0,3.59497534571574,5.94750783664214,3.39266750704734,4.34560800480691,6.64860189058859,2.0778804455956,4.38051410282946,0.101839363850316,0,0,0,0,0,0.540186389416048,0.60281927134286,0.816437989815934,0.12811372028485,1.40552586839593,1.29351685369508,0,0,0.351902248327898,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99550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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12287 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AIS0,uniprot:A2AIR8 | |||
|association_with_transcript=-30bp_to_ENSMUST00000070864,NM_007579,uc008ipe.1,uc008ipf.1_5end | |||
|cluster_id=chr2:24618702..24618716,- | |||
|description=CAGE_peak_3_at_Cacna1b_5end | |||
|id=chr2:24618702..24618716,- | |||
|ontology_enrichment_celltype=CL:0000540!4.55e-20!33;CL:0000047!4.55e-20!33;CL:0000031!4.55e-20!33;CL:0000404!4.55e-20!33;CL:0000117!2.93e-18!23;CL:0000337!2.93e-18!23;CL:0000221!1.48e-17!44;CL:0000133!1.48e-17!44;CL:0002319!3.10e-17!43;CL:0000393!8.57e-15!39;CL:0000211!8.57e-15!39;CL:0000055!1.06e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.98e-32,23;CL:0000337,1.98e-32,23;CL:0000540,4.05e-26,33;CL:0000047,4.05e-26,33;CL:0000031,4.05e-26,33;CL:0000404,4.05e-26,33;CL:0000393,6.74e-21,39;CL:0000211,6.74e-21,39;CL:0002319,3.08e-18,43;CL:0000221,1.19e-17,44;CL:0000133,1.19e-17,44;CL:0002321,2.04e-08,70;CL:0002609,2.43e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.85e-38!73;UBERON:0005743!1.85e-38!73;UBERON:0000073!1.35e-37!75;UBERON:0001016!1.35e-37!75;UBERON:0004121!4.35e-30!102;UBERON:0000924!4.35e-30!102;UBERON:0006601!4.35e-30!102;UBERON:0001049!7.96e-30!52;UBERON:0005068!7.96e-30!52;UBERON:0006241!7.96e-30!52;UBERON:0007135!7.96e-30!52;UBERON:0002346!1.94e-29!71;UBERON:0003075!1.94e-29!71;UBERON:0007284!1.94e-29!71;UBERON:0000955!9.99e-28!50;UBERON:0006238!9.99e-28!50;UBERON:0002616!3.17e-27!49;UBERON:0000033!2.76e-26!63;UBERON:0002020!7.99e-24!34;UBERON:0003080!2.58e-23!40;UBERON:0003056!1.03e-22!49;UBERON:0002780!1.43e-22!39;UBERON:0001890!1.43e-22!39;UBERON:0006240!1.43e-22!39;UBERON:0002791!8.79e-20!29;UBERON:0003528!8.79e-20!29;UBERON:0001893!8.79e-20!29;UBERON:0007811!2.13e-14!86;UBERON:0000956!1.73e-13!21;UBERON:0001869!1.73e-13!21;UBERON:0000203!1.73e-13!21;UBERON:0000153!1.41e-12!94;UBERON:0002619!8.21e-11!17;UBERON:0002021!7.92e-09!10;UBERON:0000411!7.92e-09!10;UBERON:0001950!7.92e-09!10;UBERON:0002420!1.52e-07!8;UBERON:0007245!1.52e-07!8;UBERON:0010009!1.52e-07!8;UBERON:0010011!1.52e-07!8;UBERON:0000454!1.52e-07!8;UBERON:0003076!6.11e-07!12;UBERON:0003057!6.11e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.93e-45,54;UBERON:0001017,6.53e-44,73;UBERON:0001049,1.66e-42,52;UBERON:0005068,1.66e-42,52;UBERON:0006241,1.66e-42,52;UBERON:0007135,1.66e-42,52;UBERON:0001016,2.19e-42,75;UBERON:0002020,6.37e-42,34;UBERON:0002346,1.85e-39,64;UBERON:0003075,1.85e-39,64;UBERON:0007284,1.85e-39,64;UBERON:0003528,1.94e-34,29;UBERON:0002791,1.94e-34,29;UBERON:0001893,1.94e-34,29;UBERON:0002616,4.72e-34,46;UBERON:0004121,1.33e-33,95;UBERON:0000924,1.33e-33,95;UBERON:0006601,1.33e-33,95;UBERON:0000955,4.16e-33,47;UBERON:0006238,4.16e-33,47;UBERON:0010371,4.62e-33,73;UBERON:0003080,5.42e-33,40;UBERON:0002780,1.10e-31,39;UBERON:0001890,1.10e-31,39;UBERON:0006240,1.10e-31,39;UBERON:0003056,1.22e-28,49;UBERON:0010314,1.11e-23,92;UBERON:0000956,8.08e-23,21;UBERON:0001869,8.08e-23,21;UBERON:0000203,8.08e-23,21;UBERON:0002619,6.89e-18,17;UBERON:0002021,5.69e-15,10;UBERON:0000411,5.69e-15,10;UBERON:0001950,5.69e-15,10;UBERON:0000025,3.98e-13,114;UBERON:0002420,1.31e-12,8;UBERON:0007245,1.31e-12,8;UBERON:0010009,1.31e-12,8;UBERON:0010011,1.31e-12,8;UBERON:0000454,1.31e-12,8;UBERON:0004111,1.52e-11,122;UBERON:0003076,2.11e-09,12;UBERON:0003057,2.11e-09,12;UBERON:0002240,2.29e-09,6;UBERON:0005174,2.29e-09,6;UBERON:0001137,2.29e-09,6;UBERON:0000369,1.14e-08,5;UBERON:0002435,1.14e-08,5;UBERON:0000204,1.14e-08,5;UBERON:0010082,1.14e-08,5;UBERON:0001948,2.17e-08,5;UBERON:0002315,2.17e-08,5;UBERON:0011216,2.45e-08,194;UBERON:0000119,2.54e-07,176;UBERON:0000483,5.80e-07,174;UBERON:0002950,9.87e-07,4;UBERON:0001891,9.87e-07,4;UBERON:0009616,9.87e-07,4;UBERON:0010286,9.87e-07,4 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,9.3065571995415,4.23192783417626,7.60597684207415,0.338844532069132,1.77858959222228,0,0,0,0.599200221036809,0.384218305321555,2.69592992002042,2.43010688997043,3.78584930432488,6.56997264128748,2.42955395046775,2.57230678351403,2.87536413054709,2.75765635983006,2.20231761998777,3.57524546638526,4.45458946443106,7.12185953743047,6.95306091378313,6.25096044668112,1.3959149950069,7.31591393041184,6.87592114995646,5.30331453852602,7.68807076315156,4.10078780815661,0,0.151143120213571,0,0,0,0,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0.753613202763113,0.470354828542819,0.125666591329675,0,0,0,0,0,0,0,4.09893115816166,6.91174132484402,0,0,0,0,3.59497534571574,5.94750783664214,3.39266750704734,4.34560800480691,6.64860189058859,2.0778804455956,4.38051410282946,0.101839363850316,0,0,0,0,0,0.540186389416048,0.60281927134286,0.816437989815934,0.12811372028485,1.40552586839593,1.29351685369508,0,0,0.351902248327898,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99550902271842,3.08713837137853,0,0,0,0,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,2.46144541843627,0,0,1.26203287766503,0.780877488593277,1.29254038639679,0.477937595905104,0,0.283076530788832,0.809621403349789,0.584511715822624,1.58115111178609,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0,0.129358683782755,0.643011105094777,0.886701168211368,0.356737635204141,0.987294123612726,1.522324745573,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0.269728692769641,0.165306911450672,0,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0.314578033277133,0,0,0,0.202725215290164,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,3.95326289831947,3.68260189205742,3.43737308063638,7.04598047609119,8.22099023724771,2.2661816921691,7.42524750254986,3.15224842256954,6.34399372577886,4.14208249401456,0.103787347584177,0.399024873401031,0.853668028770671,0.243106717068294,0.209613162627982,0.183843508450014,0.666740183404846,0.206035057238894,1.28367683836726,0.758091635291392,1.2673964994512,0.188626341386076,0.655490552289177,0.832326981263301,1.09127391015665,0.476293691283074,1.15884325944855,0.964546102318525,0.824171801606613,0.588795680537589,0.685738504770831,0.354951612318675,0.715308569841963,0.726732083161643,0.376437521661322,1.18460451048347,0.182927972872773,1.05227884575137,0.814824683075171,0.561142271657738,1.06771516311757,0.394017929502254,0.818462086339379,0.154936841185966,0,1.74867404556562,0.935726433781634,0,0.382576664137687,0,0 | |||
|short_description=p3@Cacna1b | |||
}} |
Revision as of 20:04, 4 August 2015
Short description: | p3@Cacna1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cacna1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -30bp_to_ENSMUST00000070864, NM_007579, uc008ipe.1, uc008ipf.1_5end |
EntrezGene: | 12287 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.98e-32 | 23 |
neuroblast (sensu Vertebrata) | 1.98e-32 | 23 |
neuron | 4.05e-26 | 33 |
neuronal stem cell | 4.05e-26 | 33 |
neuroblast | 4.05e-26 | 33 |
electrically signaling cell | 4.05e-26 | 33 |
electrically responsive cell | 6.74e-21 | 39 |
electrically active cell | 6.74e-21 | 39 |
neural cell | 3.08e-18 | 43 |
ectodermal cell | 1.19e-17 | 44 |
neurectodermal cell | 1.19e-17 | 44 |
embryonic cell | 2.04e-08 | 70 |
neuron of cerebral cortex | 2.43e-08 | 6 |