FFCP PHASE1:Mm9::chr2:22477867..22477886,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14417|HGNC=|MCL_coexpression_id=745|UniProt=P48320,Q548L4,Q3URJ3|association_with_transcript=20bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end|description=CAGE_peak_6_at_Gad2_5end|id=chr2:22477867..22477886,+|ontology_enrichment_celltype=CL:0000117!1.26e-22!23;CL:0000337!1.26e-22!23;CL:0000540!3.16e-13!33;CL:0000047!3.16e-13!33;CL:0000031!3.16e-13!33;CL:0000404!3.16e-13!33;CL:0000393!5.36e-10!39;CL:0000211!5.36e-10!39;CL:0002319!2.20e-08!43;CL:0000221!4.95e-08!44;CL:0000133!4.95e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.41e-31,23;CL:0000337,1.41e-31,23;CL:0000540,4.32e-20,33;CL:0000047,4.32e-20,33;CL:0000031,4.32e-20,33;CL:0000404,4.32e-20,33;CL:0000393,4.74e-16,39;CL:0000211,4.74e-16,39;CL:0002319,5.39e-14,43;CL:0000221,1.53e-13,44;CL:0000133,1.53e-13,44;CL:0002609,3.12e-07,6;CL:0002608,6.98e-07,3;CL:0002610,8.99e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!9.93e-29!34;UBERON:0000033!8.61e-28!63;UBERON:0001049!7.07e-27!52;UBERON:0005068!7.07e-27!52;UBERON:0006241!7.07e-27!52;UBERON:0007135!7.07e-27!52;UBERON:0000955!2.05e-26!50;UBERON:0006238!2.05e-26!50;UBERON:0002346!1.39e-25!71;UBERON:0003075!1.39e-25!71;UBERON:0007284!1.39e-25!71;UBERON:0002616!2.86e-25!49;UBERON:0001017!1.36e-24!73;UBERON:0005743!1.36e-24!73;UBERON:0002791!1.93e-24!29;UBERON:0003528!1.93e-24!29;UBERON:0001893!1.93e-24!29;UBERON:0003056!3.41e-24!49;UBERON:0000073!1.73e-23!75;UBERON:0001016!1.73e-23!75;UBERON:0004121!1.21e-20!102;UBERON:0000924!1.21e-20!102;UBERON:0006601!1.21e-20!102;UBERON:0003080!4.41e-20!40;UBERON:0002780!4.71e-19!39;UBERON:0001890!4.71e-19!39;UBERON:0006240!4.71e-19!39;UBERON:0000956!3.97e-16!21;UBERON:0001869!3.97e-16!21;UBERON:0000203!3.97e-16!21;UBERON:0007811!4.19e-16!86;UBERON:0000153!1.88e-13!94;UBERON:0002619!2.05e-13!17;UBERON:0002021!1.23e-10!10;UBERON:0000411!1.23e-10!10;UBERON:0001950!1.23e-10!10;UBERON:0002420!1.53e-09!8;UBERON:0007245!1.53e-09!8;UBERON:0010009!1.53e-09!8;UBERON:0010011!1.53e-09!8;UBERON:0000454!1.53e-09!8;UBERON:0002298!2.43e-07!6;UBERON:0003076!2.76e-07!12;UBERON:0003057!2.76e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.94e-46,54;UBERON:0002020,9.78e-42,34;UBERON:0001049,1.07e-39,52;UBERON:0005068,1.07e-39,52;UBERON:0006241,1.07e-39,52;UBERON:0007135,1.07e-39,52;UBERON:0001017,2.39e-39,73;UBERON:0001016,5.41e-38,75;UBERON:0002346,1.61e-37,64;UBERON:0003075,1.61e-37,64;UBERON:0007284,1.61e-37,64;UBERON:0000955,7.19e-36,47;UBERON:0006238,7.19e-36,47;UBERON:0003528,3.86e-35,29;UBERON:0002791,3.86e-35,29;UBERON:0001893,3.86e-35,29;UBERON:0002616,3.79e-34,46;UBERON:0004121,1.86e-33,95;UBERON:0000924,1.86e-33,95;UBERON:0006601,1.86e-33,95;UBERON:0010371,1.48e-31,73;UBERON:0003080,9.60e-31,40;UBERON:0003056,1.06e-30,49;UBERON:0002780,3.81e-29,39;UBERON:0001890,3.81e-29,39;UBERON:0006240,3.81e-29,39;UBERON:0010314,8.41e-23,92;UBERON:0000956,1.90e-22,21;UBERON:0001869,1.90e-22,21;UBERON:0000203,1.90e-22,21;UBERON:0002619,2.32e-20,17;UBERON:0002021,1.69e-15,10;UBERON:0000411,1.69e-15,10;UBERON:0001950,1.69e-15,10;UBERON:0002420,8.07e-14,8;UBERON:0007245,8.07e-14,8;UBERON:0010009,8.07e-14,8;UBERON:0010011,8.07e-14,8;UBERON:0000454,8.07e-14,8;UBERON:0000025,1.27e-12,114;UBERON:0004111,3.70e-11,122;UBERON:0000369,3.07e-09,5;UBERON:0002435,3.07e-09,5;UBERON:0000204,3.07e-09,5;UBERON:0010082,3.07e-09,5;UBERON:0003076,5.96e-09,12;UBERON:0003057,5.96e-09,12;UBERON:0002950,8.41e-08,4;UBERON:0001891,8.41e-08,4;UBERON:0009616,8.41e-08,4;UBERON:0010286,8.41e-08,4;UBERON:0011216,9.84e-08,194;UBERON:0001948,1.77e-07,5;UBERON:0002315,1.77e-07,5;UBERON:0000483,4.11e-07,174;UBERON:0000119,6.44e-07,176;UBERON:0004684,8.99e-07,3;UBERON:0002275,8.99e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,5.81890077199236,4.43681982454325,0,0,0,0,0,0,0,1.14058573539325,1.4850653216486,0.420649922702764,2.57085885963423,2.42955395046775,13.7189695120749,10.4471563409878,11.0306254393203,9.91042928994498,9.70423769447427,12.595735727012,4.2203612073662,4.7573574673253,7.29278718779464,7.81712397203867,6.19038871034848,5.04234217663473,4.12480019663135,1.99320353118744,1.3047961207771,0,0,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,2.34224637609238,2.09446706813455,0,0,0,0,8.68785708547972,8.23501085073528,10.5549655774806,3.99795936442236,5.11430914660661,11.6361304953354,8.76102820565891,0,0,0,0.420883711772948,0.130120442962704,0.229902104433473,1.0803727788321,0.753524089178575,1.56483948048054,1.40925092313335,1.03071897015702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.9395683026162,2.26390147234426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,4.33683240391152,0,0,0,0,0,0,0,0,0,0,0,11.2462460747632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0.339956859987711,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,7.34177395402186,5.06357760157895,3.43737308063638,4.98374228796694,5.48066015816514,6.0431511791176,4.05013500139084,3.60256962579376,5.43770890781046,2.07104124700728,0.415149390336707,1.99512436700516,1.36586884603307,0.729320151204882,0.419226325255965,0.735374033800057,0,0.412070114477788,0,0.758091635291392,0,0.943131706930381,0.37456602987953,0.256100609619477,0.459483751644906,1.90517476513229,0.811190281613988,0.38581844092741,0,0.588795680537589,0.342869252385415,0.532427418478012,0.715308569841963,0.290692833264657,0.376437521661322,0.338458431566706,1.46342378298218,0,0.271608227691724,1.68342681497322,0.593175090620871,0.886540341380071,0.818462086339379,0.77468420592983,0.385813221962283,0.749431733813838,0.233931608445408,0.644613162144895,0,0,0|short_description=p6@Gad2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14417 | |||
|HGNC= | |||
|MCL_coexpression_id=745 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P48320,uniprot:Q548L4,uniprot:Q3URJ3 | |||
|association_with_transcript=20bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end | |||
|cluster_id=chr2:22477867..22477886,+ | |||
|description=CAGE_peak_6_at_Gad2_5end | |||
|id=chr2:22477867..22477886,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.26e-22!23;CL:0000337!1.26e-22!23;CL:0000540!3.16e-13!33;CL:0000047!3.16e-13!33;CL:0000031!3.16e-13!33;CL:0000404!3.16e-13!33;CL:0000393!5.36e-10!39;CL:0000211!5.36e-10!39;CL:0002319!2.20e-08!43;CL:0000221!4.95e-08!44;CL:0000133!4.95e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.41e-31,23;CL:0000337,1.41e-31,23;CL:0000540,4.32e-20,33;CL:0000047,4.32e-20,33;CL:0000031,4.32e-20,33;CL:0000404,4.32e-20,33;CL:0000393,4.74e-16,39;CL:0000211,4.74e-16,39;CL:0002319,5.39e-14,43;CL:0000221,1.53e-13,44;CL:0000133,1.53e-13,44;CL:0002609,3.12e-07,6;CL:0002608,6.98e-07,3;CL:0002610,8.99e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!9.93e-29!34;UBERON:0000033!8.61e-28!63;UBERON:0001049!7.07e-27!52;UBERON:0005068!7.07e-27!52;UBERON:0006241!7.07e-27!52;UBERON:0007135!7.07e-27!52;UBERON:0000955!2.05e-26!50;UBERON:0006238!2.05e-26!50;UBERON:0002346!1.39e-25!71;UBERON:0003075!1.39e-25!71;UBERON:0007284!1.39e-25!71;UBERON:0002616!2.86e-25!49;UBERON:0001017!1.36e-24!73;UBERON:0005743!1.36e-24!73;UBERON:0002791!1.93e-24!29;UBERON:0003528!1.93e-24!29;UBERON:0001893!1.93e-24!29;UBERON:0003056!3.41e-24!49;UBERON:0000073!1.73e-23!75;UBERON:0001016!1.73e-23!75;UBERON:0004121!1.21e-20!102;UBERON:0000924!1.21e-20!102;UBERON:0006601!1.21e-20!102;UBERON:0003080!4.41e-20!40;UBERON:0002780!4.71e-19!39;UBERON:0001890!4.71e-19!39;UBERON:0006240!4.71e-19!39;UBERON:0000956!3.97e-16!21;UBERON:0001869!3.97e-16!21;UBERON:0000203!3.97e-16!21;UBERON:0007811!4.19e-16!86;UBERON:0000153!1.88e-13!94;UBERON:0002619!2.05e-13!17;UBERON:0002021!1.23e-10!10;UBERON:0000411!1.23e-10!10;UBERON:0001950!1.23e-10!10;UBERON:0002420!1.53e-09!8;UBERON:0007245!1.53e-09!8;UBERON:0010009!1.53e-09!8;UBERON:0010011!1.53e-09!8;UBERON:0000454!1.53e-09!8;UBERON:0002298!2.43e-07!6;UBERON:0003076!2.76e-07!12;UBERON:0003057!2.76e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.94e-46,54;UBERON:0002020,9.78e-42,34;UBERON:0001049,1.07e-39,52;UBERON:0005068,1.07e-39,52;UBERON:0006241,1.07e-39,52;UBERON:0007135,1.07e-39,52;UBERON:0001017,2.39e-39,73;UBERON:0001016,5.41e-38,75;UBERON:0002346,1.61e-37,64;UBERON:0003075,1.61e-37,64;UBERON:0007284,1.61e-37,64;UBERON:0000955,7.19e-36,47;UBERON:0006238,7.19e-36,47;UBERON:0003528,3.86e-35,29;UBERON:0002791,3.86e-35,29;UBERON:0001893,3.86e-35,29;UBERON:0002616,3.79e-34,46;UBERON:0004121,1.86e-33,95;UBERON:0000924,1.86e-33,95;UBERON:0006601,1.86e-33,95;UBERON:0010371,1.48e-31,73;UBERON:0003080,9.60e-31,40;UBERON:0003056,1.06e-30,49;UBERON:0002780,3.81e-29,39;UBERON:0001890,3.81e-29,39;UBERON:0006240,3.81e-29,39;UBERON:0010314,8.41e-23,92;UBERON:0000956,1.90e-22,21;UBERON:0001869,1.90e-22,21;UBERON:0000203,1.90e-22,21;UBERON:0002619,2.32e-20,17;UBERON:0002021,1.69e-15,10;UBERON:0000411,1.69e-15,10;UBERON:0001950,1.69e-15,10;UBERON:0002420,8.07e-14,8;UBERON:0007245,8.07e-14,8;UBERON:0010009,8.07e-14,8;UBERON:0010011,8.07e-14,8;UBERON:0000454,8.07e-14,8;UBERON:0000025,1.27e-12,114;UBERON:0004111,3.70e-11,122;UBERON:0000369,3.07e-09,5;UBERON:0002435,3.07e-09,5;UBERON:0000204,3.07e-09,5;UBERON:0010082,3.07e-09,5;UBERON:0003076,5.96e-09,12;UBERON:0003057,5.96e-09,12;UBERON:0002950,8.41e-08,4;UBERON:0001891,8.41e-08,4;UBERON:0009616,8.41e-08,4;UBERON:0010286,8.41e-08,4;UBERON:0011216,9.84e-08,194;UBERON:0001948,1.77e-07,5;UBERON:0002315,1.77e-07,5;UBERON:0000483,4.11e-07,174;UBERON:0000119,6.44e-07,176;UBERON:0004684,8.99e-07,3;UBERON:0002275,8.99e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,5.81890077199236,4.43681982454325,0,0,0,0,0,0,0,1.14058573539325,1.4850653216486,0.420649922702764,2.57085885963423,2.42955395046775,13.7189695120749,10.4471563409878,11.0306254393203,9.91042928994498,9.70423769447427,12.595735727012,4.2203612073662,4.7573574673253,7.29278718779464,7.81712397203867,6.19038871034848,5.04234217663473,4.12480019663135,1.99320353118744,1.3047961207771,0,0,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,2.34224637609238,2.09446706813455,0,0,0,0,8.68785708547972,8.23501085073528,10.5549655774806,3.99795936442236,5.11430914660661,11.6361304953354,8.76102820565891,0,0,0,0.420883711772948,0.130120442962704,0.229902104433473,1.0803727788321,0.753524089178575,1.56483948048054,1.40925092313335,1.03071897015702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.9395683026162,2.26390147234426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,4.33683240391152,0,0,0,0,0,0,0,0,0,0,0,11.2462460747632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0.339956859987711,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,7.34177395402186,5.06357760157895,3.43737308063638,4.98374228796694,5.48066015816514,6.0431511791176,4.05013500139084,3.60256962579376,5.43770890781046,2.07104124700728,0.415149390336707,1.99512436700516,1.36586884603307,0.729320151204882,0.419226325255965,0.735374033800057,0,0.412070114477788,0,0.758091635291392,0,0.943131706930381,0.37456602987953,0.256100609619477,0.459483751644906,1.90517476513229,0.811190281613988,0.38581844092741,0,0.588795680537589,0.342869252385415,0.532427418478012,0.715308569841963,0.290692833264657,0.376437521661322,0.338458431566706,1.46342378298218,0,0.271608227691724,1.68342681497322,0.593175090620871,0.886540341380071,0.818462086339379,0.77468420592983,0.385813221962283,0.749431733813838,0.233931608445408,0.644613162144895,0,0,0 | |||
|short_description=p6@Gad2 | |||
}} |
Revision as of 19:21, 4 August 2015
Short description: | p6@Gad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Gad2_5end |
Coexpression cluster: | MCL_coexpression_mm9:745 |
Association with transcript: | 20bp_to_NM_008078, uc008ini.1, uc008inj.1, uc008ink.1_5end |
EntrezGene: | 14417 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.41e-31 | 23 |
neuroblast (sensu Vertebrata) | 1.41e-31 | 23 |
neuron | 4.32e-20 | 33 |
neuronal stem cell | 4.32e-20 | 33 |
neuroblast | 4.32e-20 | 33 |
electrically signaling cell | 4.32e-20 | 33 |
electrically responsive cell | 4.74e-16 | 39 |
electrically active cell | 4.74e-16 | 39 |
neural cell | 5.39e-14 | 43 |
ectodermal cell | 1.53e-13 | 44 |
neurectodermal cell | 1.53e-13 | 44 |
neuron of cerebral cortex | 3.12e-07 | 6 |
hippocampal neuron | 6.98e-07 | 3 |
raphe nuclei neuron | 8.99e-07 | 3 |