UBERON:0003296: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=gland of diencephalon | |name=gland of diencephalon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001894 | |part_of=UBERON:0001894 | ||
Latest revision as of 17:39, 12 September 2014
| Name: | gland of diencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"between brain gland" EXACT [OBOL:automatic] "diencephalon gland" EXACT [OBOL:automatic] "gland of between brain" EXACT [OBOL:automatic] "gland of interbrain" EXACT [OBOL:automatic] "gland of mature diencephalon" EXACT [OBOL:automatic] "interbrain gland" EXACT [OBOL:automatic] "mature diencephalon gland" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| is a: | UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
... further results Mouse (Mus musculus)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 2.57e-195 | FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 1.0e-156 | FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.0e-156 | FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.5e-156 | FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 2.79e-131 | FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.0e-112 | FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.0e-112 | FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.76e-111 | FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 1.76e-111 | FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 8.91e-111 | FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 5.02e-99 | FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 5.02e-99 | FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 1.38e-98 | FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.38e-98 | FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22290440..22290455,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290440..22290455, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_86c8842de92bb34e78ab840208c7dc62 | p3@ENST00000514282 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9194488..9194491, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:87751931..87751947, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_86c8842de92bb34e78ab840208c7dc62 | p4@CHRNB2 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422858..55422866, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995979..61995990,-#_86c8842de92bb34e78ab840208c7dc62 | p2@AB591020 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_86c8842de92bb34e78ab840208c7dc62 | p28@KCNIP4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:57914395..57914398, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_86c8842de92bb34e78ab840208c7dc62 | p6@FRMPD1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650530..52650533, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650541..52650548, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_86c8842de92bb34e78ab840208c7dc62 | p3@WNT16 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_86c8842de92bb34e78ab840208c7dc62 | p16@MATN2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:55484129..55484139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_86c8842de92bb34e78ab840208c7dc62 | p7@TULP4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17040158..17040170, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:45782019..45782028, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9782665..9782674, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995207..61995219,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995207..61995219, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18040537..18040547, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:15134610..15134617, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18067951..18067954, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18066345..18066365, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_86c8842de92bb34e78ab840208c7dc62 | p10@PRR16 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:60826120..60826127, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22294730..22294743,-#_86c8842de92bb34e78ab840208c7dc62 | p6@PRL |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:31003621..31003641,+#_86c8842de92bb34e78ab840208c7dc62 | p3@GHRHR |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:55470984..55471009, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:78813679..78813681,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:78813679..78813681, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_86c8842de92bb34e78ab840208c7dc62 | p9@GNB3 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr18:56963107..56963117, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61995906..61995914,-#_86c8842de92bb34e78ab840208c7dc62 | p6@AB591020 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287669..22287676,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287669..22287676, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_86c8842de92bb34e78ab840208c7dc62 | p4@AANAT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:54952462..54952471, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17185712..17185735, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:47662877..47662880, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135520309..135520324, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:32468385..32468392, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422565..55422604, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17064630..17064651, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:135964996..135965001,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr9:135964996..135965001, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_86c8842de92bb34e78ab840208c7dc62 | p17@FMN2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22290447..22290450,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290447..22290450, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_86c8842de92bb34e78ab840208c7dc62 | p2@ENST00000514282 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:70178863..70178874,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:70178863..70178874, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:57914399..57914402, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:123959529..123959547,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:123959529..123959547, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:133115455..133115457,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:133115455..133115457, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99798419..99798422, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:31006649..31006651,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:31006649..31006651, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041194..18041197, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287695..22287700,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287695..22287700, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942376..100942381, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135472861..135472868, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:139938385..139938390, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:72297717..72297725, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:9528518..9528536,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:9528518..9528536, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_86c8842de92bb34e78ab840208c7dc62 | p2@PLCL2-AS1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_86c8842de92bb34e78ab840208c7dc62 | p4@ENST00000439998 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:68620100..68620112,-#_86c8842de92bb34e78ab840208c7dc62 | p1@GNRHR |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_86c8842de92bb34e78ab840208c7dc62 | p11@SRRM3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:33087873..33087886, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995480..61995499,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995480..61995499, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041244..18041266, - |
