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CL:0002504: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=enteric smooth muscle cell
|name=enteric smooth muscle cell
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2011-01-17T03:39:38Z
|obo_creation_date=2011-01-17T03:39:38Z
|part_of=UBERON:0000160
|part_of=UBERON:0000160

Latest revision as of 16:43, 12 September 2014

Name:enteric smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell of the intestine." [GOC:tfm]
Synonyms: "intestinal smooth muscle cell" EXACT []
Created by:tmeehan
Creation date:2011-01-17T03:39:38Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0000160(intestine)



Children


is a:CL:1000279 (smooth muscle cell of large intestine)
derives from:FF:0000180 (human smooth muscle cell of intestine sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002504 (enteric smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data