FFCP PHASE1:Hg19::chr9:130911770..130911779,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3934 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6526 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENST00000372998_5end | |||
|coexpression_cluster_id=C484 | |||
|description=CAGE_peak_2_at_LCN2_5end | |||
|id=chr9:130911770..130911779,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.06e-26!254;CL:0000223!1.08e-18!59;CL:0002076!2.76e-18!43;CL:0002368!2.12e-12!13;CL:0002202!1.86e-08!9;CL:0002632!1.86e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.41e-16;42!CL:0002251;1.12e-11;20!CL:0002178;1.84e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.12e-23,253;CL:0000223,2.27e-20,58;CL:0002076,2.45e-20,42;CL:0002251,1.30e-11,20;CL:0000076,1.72e-07,63;CL:0002178,2.01e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;6.72e-11;58!UBERON:0006595;4.82e-08;86 | |||
|ontology_enrichment_disease=DOID:305!2.13e-22!106;DOID:1749!2.92e-15!14;DOID:0050687!1.72e-14!143;DOID:299!6.24e-11!25;DOID:162!4.19e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.41e-23;14!DOID:299;2.46e-14;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.40e-23,14;DOID:305,2.24e-20,106;DOID:299,2.52e-14,25;DOID:0050687,3.57e-12,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.66e-29!169;UBERON:0000925!2.66e-29!169;UBERON:0006595!2.66e-29!169;UBERON:0001007!7.56e-27!155;UBERON:0001555!7.56e-27!155;UBERON:0007026!7.56e-27!155;UBERON:0004921!3.72e-23!129;UBERON:0004185!3.72e-23!129;UBERON:0000077!3.05e-22!130;UBERON:0001041!9.13e-21!98;UBERON:0000466!7.53e-18!126;UBERON:0001004!1.31e-17!72;UBERON:0000464!1.02e-16!104;UBERON:0005177!2.39e-14!107;UBERON:0000065!4.52e-14!53;UBERON:0005911!2.91e-13!82;UBERON:0005178!2.15e-11!34;UBERON:0002224!2.15e-11!34;UBERON:0005181!7.00e-11!35;UBERON:0005153!7.20e-11!37;UBERON:0002075!1.66e-10!18;UBERON:0003104!3.74e-10!238;UBERON:0009142!3.74e-10!238;UBERON:0008947!4.06e-10!38;UBERON:0003258!4.06e-10!38;UBERON:0001048!7.78e-10!168;UBERON:0002294!8.11e-10!7;UBERON:0001173!8.11e-10!7;UBERON:0004912!8.11e-10!7;UBERON:0000161!1.80e-09!35;UBERON:0005157!2.34e-09!51;UBERON:0000072!4.51e-09!46;UBERON:0002048!6.52e-09!22;UBERON:0000117!6.52e-09!22;UBERON:0000171!6.52e-09!22;UBERON:0000170!6.52e-09!22;UBERON:0005597!6.52e-09!22;UBERON:0000118!6.52e-09!22;UBERON:0007196!7.75e-08!14;UBERON:0001558!7.75e-08!14;UBERON:0000166!1.07e-07!21;UBERON:0002114!1.20e-07!12;UBERON:0005409!1.39e-07!35;UBERON:0002108!1.46e-07!14;UBERON:0002553!1.59e-07!70;UBERON:0001045!1.62e-07!11;UBERON:0000481!2.11e-07!347;UBERON:0000062!5.46e-07!511;UBERON:0004807!8.75e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.96e-11;7!UBERON:0001173;1.96e-11;7!UBERON:0001041;5.04e-10;14!UBERON:0000161;5.75e-10;19!UBERON:0000166;5.75e-10;19!UBERON:0004921;2.49e-09;33!UBERON:0000165;1.23e-08;28!UBERON:0001555;1.45e-08;54!UBERON:0003343;2.62e-08;4!UBERON:0004785;2.62e-08;4!UBERON:0000974;3.30e-08;6!UBERON:0000344;7.83e-08;20!UBERON:0002075;1.04e-07;18!UBERON:0002110;1.84e-07;3!UBERON:0001004;2.24e-07;65!UBERON:0000945;5.42e-07;5!UBERON:0010039;5.42e-07;5!UBERON:0005181;6.19e-07;35!UBERON:0005178;6.21e-07;34!UBERON:0002224;6.21e-07;34!UBERON:0001723;8.40e-07;3!UBERON:0001033;8.40e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.89e-22,160;UBERON:0000925,3.89e-22,160;UBERON:0006595,3.89e-22,160;UBERON:0001007,3.00e-20,145;UBERON:0001555,3.00e-20,145;UBERON:0007026,3.00e-20,145;UBERON:0004921,8.96e-17,118;UBERON:0001004,2.93e-15,74;UBERON:0001041,1.37e-13,87;UBERON:0000161,9.21e-13,36;UBERON:0005177,5.72e-12,101;UBERON:0000166,8.71e-12,22;UBERON:0005911,2.37e-10,82;UBERON:0000065,1.86e-09,54;UBERON:0002294,1.16e-08,9;UBERON:0001173,1.16e-08,9;UBERON:0004912,1.16e-08,9;UBERON:0003343,2.63e-08,4;UBERON:0004785,2.63e-08,4;UBERON:0000165,3.38e-08,29;UBERON:0000930,3.38e-08,29;UBERON:0005178,4.22e-08,34;UBERON:0002224,4.22e-08,34;UBERON:0000344,8.29e-08,20;UBERON:0005181,8.93e-08,35;UBERON:0002075,9.73e-08,18;UBERON:0002110,1.84e-07,3;UBERON:0006242,1.84e-07,3;UBERON:0005153,3.24e-07,37;UBERON:0005157,9.20e-07,47;UBERON:0001723,9.67e-07,3;UBERON:0001033,9.67e-07,3;UBERON:0010056,9.67e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,2.75826367343678,0.30120591877825,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,1.45718115317017,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73934767846967,1.09098448236334,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.435758888184812,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,1.77236972004421,0,0,0,0.548751427043128,3.37205259772859,0.502644862058154,0,0,0,0,0,0,0.577465791044295,2.31492756288305,2.28304982681518,0,0,0,0,0,0.93733833986777,0.503946384596579,0.567100388969546,0.0895585227028483,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,17.1270639420767,0,0,0,4.51199612907412,1.00119938235739,0,1.46139224653261,0.211103257785751,0,0,0,0,0,0,3.05851527654046,6.64860807142979,0,0,0,0,0,0.650756789328606,0.721287081534056,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,1.65284915360978,4.80475168412765,1.14851441245126,5.96830907047745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0.670302275535787,1.08890984861323,0.847294206991012,1.29151611801369,0,0,0,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.92419999510413,0,0,0,0.284136146806413,0,0,0,0,0,0.445234820091624,0,0,2.78947183551498,3.59169090190492,0,0,0,0,10.3348603819426,69.4602157741363,0,0.197286811273867,0,0,0,0,0,0,0,0,5.34829206941848,0.762760950878299,0.236387681767936,0,0,0,0,0,0,0,0,0,0.871507708151921,20.6347141532333,2.07765697960252,0.455768223388005,0,0.0897576444097721,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,26.4437149217819,0,0,5.97157158647103,1.32686346755009,0,0,0,0,0.067401132980677,0,0,0,6.26126780582687,0.242780379534093,0.394584402849391,0,0,0.189559738885464,0,0,1.32930774541437,0.330991955875499,0.627865836814451,2.38944859545918,18.4996204919365,0,2.42983633669183,7.64340699832146,6.61649970011059,2.79562669187248,0,0.0967563312890851,0.0730893170861856,0,1.26085721434945,0,2.25980740780532,0,0,0,11.3419801986186,31.7428928196073,13.0206326791005,38.7630642589333,4.03453168031497,0,0,26.3620280318314,0,11.3133136616062,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,8.16948096572415,0,0,0,0,0,0,0,0,0,3.35434687599266,1.33969702408637,0.157363764404994,0,0,42.0294282129585,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,9.06760240786946,41.5840863166836,2.56289790162467,2.20086027139532,3.31391244277756,0,0,0,7.021753835472,0,0,0,0,1.09937867375164,0,0,0,0.573409195690071,0,0,0,0.124980407962107,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56596575179127,1.58694147858591,0,0,0,2.47041157728778,0.438568099157414,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0.163565394255844,0,0,43.5302974118772,0,0,0,0,0,3.49698769298611,1.86623178009892,0,0,0.314531883711793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72961330303897,1.29766695682514,5.13600075860701,16.751221591799,0,0,0,0.752103283492572,0.20170506870352,1.56302802246618,0,0.655087670040387,45.835386727284,0,0,0,0,0,4.93431990171464,1.98484471355718,0,80.6180918405846,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0.945550727071746,5.00541308514311,1.17739639275771,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0,0,0,8.17431981758527,0,0,0,62.5461751125257,0,0,16.2190376106799,46.3269102663947,41.9397661939007,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0.45120521581504,0,69.9931439334178,37.759751273579,11.7152395366186,1.46067277649303,4.12856355064087,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0,0,0,3.83821167421766,0.952257725854961,0,0.186224142887574,0,0.318235791390825,0,4.13661821004227,2.05339980651169,2.55937801455433,17.9305513481691,4.65724499164419,42.2482964090958,0.853818767021724,0,22.0969997182204,0,0.366724332548599,2.03448089157869,0,0.402547587182052,0 | |||
|short_description=p2@LCN2 | |||
}} |
Revision as of 03:29, 23 January 2014
Short description: | p2@LCN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LCN2_5end |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | -17bp_to_ENST00000372998_5end |
EntrezGene: | LCN2 |
HGNC: | 6526 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.12e-23 | 253 |
endodermal cell | 2.27e-20 | 58 |
endo-epithelial cell | 2.45e-20 | 42 |
epithelial cell of alimentary canal | 1.30e-11 | 20 |
squamous epithelial cell | 1.72e-07 | 63 |
epithelial cell of stomach | 2.01e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.89e-22 | 160 |
endoderm | 3.89e-22 | 160 |
presumptive endoderm | 3.89e-22 | 160 |
digestive system | 3.00e-20 | 145 |
digestive tract | 3.00e-20 | 145 |
primitive gut | 3.00e-20 | 145 |
subdivision of digestive tract | 8.96e-17 | 118 |
respiratory system | 2.93e-15 | 74 |
foregut | 1.37e-13 | 87 |
orifice | 9.21e-13 | 36 |
trunk region element | 5.72e-12 | 101 |
oral opening | 8.71e-12 | 22 |
endo-epithelium | 2.37e-10 | 82 |
respiratory tract | 1.86e-09 | 54 |
biliary system | 1.16e-08 | 9 |
biliary tree | 1.16e-08 | 9 |
biliary bud | 1.16e-08 | 9 |
mucosa of oral region | 2.63e-08 | 4 |
respiratory system mucosa | 2.63e-08 | 4 |
mouth | 3.38e-08 | 29 |
stomodeum | 3.38e-08 | 29 |
thoracic cavity element | 4.22e-08 | 34 |
thoracic cavity | 4.22e-08 | 34 |
mucosa | 8.29e-08 | 20 |
thoracic segment organ | 8.93e-08 | 35 |
viscus | 9.73e-08 | 18 |
gallbladder | 1.84e-07 | 3 |
gall bladder primordium | 1.84e-07 | 3 |
epithelial bud | 3.24e-07 | 37 |
epithelial fold | 9.20e-07 | 47 |
tongue | 9.67e-07 | 3 |
gustatory system | 9.67e-07 | 3 |
future tongue | 9.67e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.40e-23 | 14 |
carcinoma | 2.24e-20 | 106 |
adenocarcinoma | 2.52e-14 | 25 |
cell type cancer | 3.57e-12 | 143 |