FFCP PHASE1:Hg19::chr6:83073952..83074004,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |||
|TSSclassifier=strong | |||
|UniProt=A8K555,Q13641 | |||
|association_with_transcript=0bp_to_ENST00000543496,NM_001166392,uc003pjo.2_5end | |||
|coexpression_cluster_id=C1089 | |||
|description=CAGE_peak_3_at_TPBG_5end | |||
|id=chr6:83073952..83074004,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.71e-21!180;CL:0000057!6.32e-18!75;CL:0000548!1.11e-13!679;CL:0000004!1.11e-13!679;CL:0000255!1.11e-13!679;CL:0000066!6.04e-13!254;CL:0000012!7.81e-13!682;CL:0002321!5.66e-12!248;CL:0000220!2.30e-11!246;CL:0000183!2.06e-09!59;CL:0000680!2.78e-09!57;CL:0000056!2.78e-09!57;CL:0000355!2.78e-09!57;CL:0000187!2.99e-09!54;CL:0000393!3.36e-08!60;CL:0000211!3.36e-08!60;CL:0000192!1.56e-07!42;CL:0000514!1.56e-07!42;CL:0000222!3.43e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.73e-09;55!CL:0000723;1.75e-08;61!CL:0000057;1.23e-07;73!CL:0000048;2.24e-07;58!CL:0000349;2.85e-07;19!CL:0000034;5.00e-07;69!CL:0002620;8.83e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.17e-19,76;CL:0000066,3.23e-10,253;CL:0002321,1.37e-09,250;CL:0000680,2.15e-09,58;CL:0000056,2.15e-09,58;CL:0000355,2.15e-09,58;CL:0000187,2.42e-09,55;CL:0000393,1.93e-08,61;CL:0000211,1.93e-08,61;CL:0000192,1.76e-07,43;CL:0000514,1.76e-07,43;CL:0000349,3.19e-07,19;CL:0002620,7.32e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.64e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.12e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002100!2.93e-14!216;UBERON:0003102!1.06e-13!95;UBERON:0000475!1.70e-12!365;UBERON:0000468!4.28e-12!659;UBERON:0000486!8.35e-12!82;UBERON:0005256!4.10e-11!143;UBERON:0003104!5.98e-11!238;UBERON:0009142!5.98e-11!238;UBERON:0000914!1.13e-10!83;UBERON:0002329!1.13e-10!83;UBERON:0003077!1.13e-10!83;UBERON:0003059!1.13e-10!83;UBERON:0007282!1.13e-10!83;UBERON:0009618!1.13e-10!83;UBERON:0007285!1.13e-10!83;UBERON:0004119!7.26e-10!169;UBERON:0000925!7.26e-10!169;UBERON:0006595!7.26e-10!169;UBERON:0000481!2.21e-09!347;UBERON:0004290!2.98e-09!70;UBERON:0005156!3.23e-08!59;UBERON:0000990!3.23e-08!59;UBERON:0000467!4.56e-08!625;UBERON:0002385!5.88e-08!63;UBERON:0001015!5.88e-08!63;UBERON:0000383!5.88e-08!63;UBERON:0004923!6.88e-08!57;UBERON:0001134!7.01e-08!61;UBERON:0002036!7.01e-08!61;UBERON:0003082!7.01e-08!61;UBERON:0000480!7.37e-08!626;UBERON:0000464!2.00e-07!104;UBERON:0005631!3.98e-07!14;UBERON:0000158!3.98e-07!14;UBERON:0003100!5.24e-07!41;UBERON:0001048!9.43e-07!168 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.73e-14,99;UBERON:0000486,5.88e-12,83;UBERON:0002100,7.96e-12,199;UBERON:0002329,1.89e-09,71;UBERON:0003059,1.89e-09,71;UBERON:0007282,1.89e-09,71;UBERON:0004290,1.89e-09,71;UBERON:0009618,1.89e-09,71;UBERON:0007524,2.18e-09,73;UBERON:0003077,4.86e-09,72;UBERON:0007285,4.86e-09,72;UBERON:0007503,5.04e-09,78;UBERON:0005256,7.71e-09,122;UBERON:0003104,1.69e-08,160;UBERON:0009142,1.69e-08,160;UBERON:0004923,2.33e-08,66;UBERON:0002385,4.59e-08,64;UBERON:0001015,4.59e-08,64;UBERON:0000383,4.59e-08,64;UBERON:0001134,5.62e-08,62;UBERON:0002036,5.62e-08,62;UBERON:0003082,5.62e-08,62;UBERON:0005156,1.10e-07,59;UBERON:0000990,1.10e-07,59;UBERON:0005631,1.30e-07,14;UBERON:0000158,1.30e-07,14;UBERON:0004119,2.06e-07,160;UBERON:0000925,2.06e-07,160;UBERON:0006595,2.06e-07,160;UBERON:0002199,6.77e-07,46;UBERON:0002416,6.77e-07,46;UBERON:0003100,9.93e-07,41 | |||
|phase1_expression=1.63510541343501,2.35510576280081,2.67813367782345,3.00219895059391,1.78784437770915,1.74467704820074,2.53299878168311,2.52687949370732,0.783556884599516,4.42321085702716,3.48900583986214,6.11635841964482,5.01157258634062,2.22779435328084,2.65117900582333,6.05092631806598,3.01347264011988,5.11217063271161,5.36726078669558,0.861847406537515,2.44800829493104,2.19418305034661,0.286235987131057,0.821246550437305,0.376627918784408,0,0,0,0,0,0.154816123316076,0,2.10844143144775,1.10926203050036,0,0,0.587200878669695,0,0,0,1.11957737119962,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,3.83587685530591,0.722878304769133,2.00535164254356,2.60723734129483,0,1.45990461090791,1.22895262313288,1.10864698731282,2.54720878510066,0.72038491523742,3.27865759463288,5.19098219898201,0,0,0.531831842075461,0,0,0,0.198762407366705,0.860234595106124,1.04142150482278,1.13061588384802,1.67799774483962,1.10047216776027,1.04497483268405,1.03366703667732,0.35576626268671,0.33472061276467,0.805658634218294,0.760272105718513,1.95249646038536,0.735326160691737,2.43042584364528,0.625098097988558,0.44905874525234,0.225222960966644,0,0,2.19842092716489,0,0,7.84969293856562,6.46063537203914,4.05217637326655,5.82600395578163,19.5048902109193,4.25602058638028,1.68203280042692,4.2699598291882,5.18001851676036,4.66816553099649,4.31074150623002,1.14423332179421,4.23800797405808,4.03323147135999,2.34321431833797,6.24320153660641,3.4228309292667,5.82849854152024,2.3486899728753,1.13311061057692,2.10676210053373,3.87892925384297,6.1417158655884,2.89312187292143,3.56400857184616,4.94533858557114,7.28129089550421,7.18618141816238,3.53505839303539,4.37914819551875,3.60183350129438,4.82875382968922,1.83892677479412,4.20666564938471,2.83580457900053,4.84352016359927,4.48470516518992,3.60284231971255,9.90300617078528,4.84346887420663,6.44101350114073,3.7223371266318,6.07594796068558,3.80004320128675,3.28163906517349,3.12969655383818,4.20279747728911,7.10019185033229,1.91428986632517,4.23901480776219,3.47869535693934,4.09119180886252,2.00763216772303,7.19644866164613,5.4337205011809,5.92589108634544,7.56725701612204,4.54177531576131,1.09493207722749,3.12899064659632,8.36213219650751,1.38134921352481,5.10804720835177,5.0531563716871,1.65629520055781,1.34867752062481,2.89213235860178,1.7647035637183,2.17879444092406,2.37270619111097,2.15730093056263,2.74710051175484,2.30848294167834,0.738155454624648,4.20725321410337,2.8810180793198,2.94017422771084,0,0,0.590789906681404,0,0.491953754172454,4.11762744716461,4.2802611309364,2.24803506515239,4.2222168412885,3.98130314181677,1.3032332212413,3.11980435583874,1.44331342025273,1.73895607462615,3.63966952131047,0.433099343283221,0.462985512576611,0,6.3216351836742,6.00940313466411,0.492434012174795,0.234004265139238,0,1.87467667973554,3.52762469217605,2.69372684760534,5.0152772713595,4.35950907770943,6.51750554580859,0.492663237895943,0.088048434013226,0,0.720599767084807,0.50496973370552,0.507983154337352,1.14596527667483,0,1.71072446022705,0.205654985406647,0,0,2.46688385559794,0.43596006883328,1.98013371716565,4.52451005152222,10.7296933755565,4.22651376278,6.38251479803689,4.16029747645464,4.37252536245642,0,2.39779961114489,3.57444984145369,5.42621605391443,0,4.23457039581856,5.33087923113819,4.75171123760058,5.42590878707255,2.61460037580088,6.09835246210548,0,0,0,1.19812427745791,3.44585807502342,1.42636905040718,2.17171960001369,2.87666851570537,1.43248770591916,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,4.2942022101699,3.50119364741774,4.34024037919577,2.70362119990049,1.96271887676878,3.94256037584837,3.74852527976682,1.80567659836631,0,3.10419213877515,5.31380478828349,2.02806085395873,8.25394337446787,1.95801157462741,2.40200396667599,0,0,0,3.03127571446259,3.32870879020994,4.83824469327489,2.97729369382532,7.21271274453894,5.89386198309454,4.74114852246094,1.53512174720011,5.62988724002626,5.93672265779964,4.62629081407967,6.21466038595945,5.09188367285617,7.2695620085707,3.02146983995894,0.725156697549733,8.62177822304125,4.78821142466661,5.28146461557191,4.55227920016793,6.03172308813351,3.15839729035188,1.61732207919271,2.35304930753057,4.38417673959782,1.89992932007176,1.13733384070897,0.510281115829547,1.0795795805107,0,4.87703587578935,2.50844886927427,3.05851527654046,2.49322802678617,1.79099803777743,0,0,0.256450125116389,0.984043937099117,0.325378394664303,2.06082023295445,1.00726411300178,0.41254749960294,4.01985876597321,1.95018073810956,9.64103579064957,3.77015801339276,3.54311819363682,3.68408819342711,2.89456802217514,4.94133126394059,2.46528379654188,4.00565148855674,3.73934549716297,7.10725136052206,6.1500821556834,10.0814042870721,11.7343025792438,0.464845549297286,28.9627359084189,2.7881490806424,1.23213432070436,2.12922412126809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| |||
|short_description=p3@TPBG | |||
}} |
Revision as of 12:50, 22 January 2014
Short description: | p3@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TPBG_5end |
Coexpression cluster: | C1089_Smooth_Small_Fibroblast_Prostate_anaplastic_mesenchymal_nasal |
Association with transcript: | 0bp_to_ENST00000543496, NM_001166392, uc003pjo.2_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | A8K555Q13641 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.17e-19 | 76 |
epithelial cell | 3.23e-10 | 253 |
embryonic cell | 1.37e-09 | 250 |
muscle precursor cell | 2.15e-09 | 58 |
myoblast | 2.15e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.15e-09 | 58 |
muscle cell | 2.42e-09 | 55 |
electrically responsive cell | 1.93e-08 | 61 |
electrically active cell | 1.93e-08 | 61 |
smooth muscle cell | 1.76e-07 | 43 |
smooth muscle myoblast | 1.76e-07 | 43 |
extraembryonic cell | 3.19e-07 | 19 |
skin fibroblast | 7.32e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.73e-14 | 99 |
multilaminar epithelium | 5.88e-12 | 83 |
trunk | 7.96e-12 | 199 |
somite | 1.89e-09 | 71 |
presomitic mesoderm | 1.89e-09 | 71 |
presumptive segmental plate | 1.89e-09 | 71 |
dermomyotome | 1.89e-09 | 71 |
trunk paraxial mesoderm | 1.89e-09 | 71 |
dense mesenchyme tissue | 2.18e-09 | 73 |
paraxial mesoderm | 4.86e-09 | 72 |
presumptive paraxial mesoderm | 4.86e-09 | 72 |
epithelial vesicle | 5.04e-09 | 78 |
trunk mesenchyme | 7.71e-09 | 122 |
mesenchyme | 1.69e-08 | 160 |
entire embryonic mesenchyme | 1.69e-08 | 160 |
organ component layer | 2.33e-08 | 66 |
muscle tissue | 4.59e-08 | 64 |
musculature | 4.59e-08 | 64 |
musculature of body | 4.59e-08 | 64 |
skeletal muscle tissue | 5.62e-08 | 62 |
striated muscle tissue | 5.62e-08 | 62 |
myotome | 5.62e-08 | 62 |
reproductive structure | 1.10e-07 | 59 |
reproductive system | 1.10e-07 | 59 |
extraembryonic membrane | 1.30e-07 | 14 |
membranous layer | 1.30e-07 | 14 |
endoderm-derived structure | 2.06e-07 | 160 |
endoderm | 2.06e-07 | 160 |
presumptive endoderm | 2.06e-07 | 160 |
integument | 6.77e-07 | 46 |
integumental system | 6.77e-07 | 46 |
female organism | 9.93e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.12e-07 | 14 |