FFCP PHASE1:Hg19::chr5:140868673..140868706,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56097 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8718 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y5F6 | |||
|association_with_transcript=-101bp_to_ENST00000252087,NM_018929,NM_032407,uc003lla.1,uc011dbc.1_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_PCDHGC5_5end | |||
|id=chr5:140868673..140868706,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.62e-21!180;CL:0000680!6.70e-13!57;CL:0000056!6.70e-13!57;CL:0000355!6.70e-13!57;CL:0000187!2.52e-11!54;CL:0000192!4.15e-11!42;CL:0000514!4.15e-11!42;CL:0000183!5.23e-11!59;CL:0000393!2.25e-10!60;CL:0000211!2.25e-10!60;CL:0000359!3.51e-10!32;CL:0000057!8.22e-10!75;CL:0002620!4.06e-08!23;CL:0000499!9.64e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.58e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.07e-09,32;CL:0000680,2.42e-07,58;CL:0000056,2.42e-07,58;CL:0000355,2.42e-07,58;CL:0000192,8.12e-07,43;CL:0000514,8.12e-07,43 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.68e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.11e-29!57;UBERON:0005068!5.11e-29!57;UBERON:0006241!5.11e-29!57;UBERON:0007135!5.11e-29!57;UBERON:0001017!3.79e-26!82;UBERON:0002616!3.41e-25!59;UBERON:0005743!2.15e-24!86;UBERON:0000955!9.13e-24!69;UBERON:0006238!9.13e-24!69;UBERON:0001893!9.53e-23!34;UBERON:0002020!2.64e-22!34;UBERON:0003528!2.64e-22!34;UBERON:0000073!4.46e-22!94;UBERON:0001016!4.46e-22!94;UBERON:0002780!5.64e-22!41;UBERON:0001890!5.64e-22!41;UBERON:0006240!5.64e-22!41;UBERON:0002791!7.54e-22!33;UBERON:0001869!1.04e-21!32;UBERON:0003080!4.53e-21!42;UBERON:0000475!6.87e-21!365;UBERON:0003075!2.82e-19!86;UBERON:0007284!2.82e-19!86;UBERON:0000033!1.82e-18!123;UBERON:0002346!5.45e-18!90;UBERON:0000153!2.96e-17!129;UBERON:0007811!2.96e-17!129;UBERON:0000914!6.03e-16!83;UBERON:0002329!6.03e-16!83;UBERON:0003077!6.03e-16!83;UBERON:0003059!6.03e-16!83;UBERON:0007282!6.03e-16!83;UBERON:0009618!6.03e-16!83;UBERON:0007285!6.03e-16!83;UBERON:0000956!8.32e-16!25;UBERON:0000203!8.32e-16!25;UBERON:0004121!5.86e-15!169;UBERON:0000119!6.06e-15!312;UBERON:0002619!6.13e-15!22;UBERON:0000483!2.05e-14!309;UBERON:0000924!2.51e-14!173;UBERON:0006601!2.51e-14!173;UBERON:0001950!2.99e-13!20;UBERON:0000486!4.30e-13!82;UBERON:0003056!8.22e-13!61;UBERON:0004290!3.05e-12!70;UBERON:0000025!8.09e-12!194;UBERON:0001134!4.26e-11!61;UBERON:0002036!4.26e-11!61;UBERON:0003082!4.26e-11!61;UBERON:0002385!2.68e-10!63;UBERON:0001015!2.68e-10!63;UBERON:0000383!2.68e-10!63;UBERON:0004111!8.78e-10!241;UBERON:0007023!1.66e-09!115;UBERON:0000477!1.71e-09!286;UBERON:0003076!4.50e-09!15;UBERON:0003057!4.50e-09!15;UBERON:0004573!7.34e-09!33;UBERON:0004571!7.34e-09!33;UBERON:0001637!8.87e-09!42;UBERON:0003509!8.87e-09!42;UBERON:0004572!8.87e-09!42;UBERON:0002420!1.46e-08!9;UBERON:0007245!1.46e-08!9;UBERON:0010009!1.46e-08!9;UBERON:0010011!1.46e-08!9;UBERON:0000454!1.46e-08!9;UBERON:0000481!2.62e-08!347;UBERON:0002308!4.99e-08!9;UBERON:0000125!4.99e-08!9;UBERON:0004733!1.75e-07!12;UBERON:0002028!1.75e-07!12;UBERON:0007277!1.75e-07!12;UBERON:0000467!2.72e-07!625;UBERON:0002199!2.84e-07!45;UBERON:0002416!2.84e-07!45;UBERON:0000480!3.47e-07!626;UBERON:0000468!3.66e-07!659;UBERON:0009663!8.06e-07!7;UBERON:0000200!8.22e-07!6;UBERON:0002097!9.83e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.81e-31;32!UBERON:0001893;5.34e-31;34!UBERON:0003528;3.53e-29;34!UBERON:0002020;3.53e-29;34!UBERON:0002791;8.18e-29;32!UBERON:0002619;3.44e-26;22!UBERON:0000956;1.99e-24;25!UBERON:0000203;1.99e-24;25!UBERON:0002780;3.83e-24;41!UBERON:0001890;3.83e-24;41!UBERON:0001950;3.16e-23;20!UBERON:0000073;9.01e-22;53!UBERON:0002616;9.01e-22;53!UBERON:0001017;5.55e-16;75!UBERON:0000955;5.38e-15;68!UBERON:0001016;2.85e-12;83!UBERON:0002420;1.00e-11;9!UBERON:0007245;1.00e-11;9!UBERON:0010009;1.00e-11;9!UBERON:0010011;1.00e-11;9!UBERON:0000454;1.00e-11;9!UBERON:0000125;8.61e-11;9!UBERON:0002308;8.61e-11;9!UBERON:0000200;1.14e-10;6!UBERON:0000349;2.69e-09;5!UBERON:0009663;8.94e-09;7!UBERON:0001871;1.95e-08;6!UBERON:0000369;7.04e-08;4!UBERON:0002435;7.04e-08;4!UBERON:0000204;7.04e-08;4!UBERON:0002298;7.74e-08;6!UBERON:0004573;3.99e-07;33!UBERON:0004571;3.99e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.53e-39,56;UBERON:0005068,2.53e-39,56;UBERON:0006241,2.53e-39,56;UBERON:0007135,2.53e-39,56;UBERON:0000073,4.33e-38,53;UBERON:0002616,4.33e-38,53;UBERON:0001893,1.02e-34,34;UBERON:0001869,1.15e-34,32;UBERON:0001017,2.01e-34,81;UBERON:0003528,5.50e-34,34;UBERON:0002020,5.50e-34,34;UBERON:0002780,1.04e-33,41;UBERON:0001890,1.04e-33,41;UBERON:0003080,1.04e-33,41;UBERON:0006240,1.04e-33,41;UBERON:0002791,8.19e-32,32;UBERON:0000955,2.11e-31,68;UBERON:0006238,2.11e-31,68;UBERON:0001016,5.69e-31,89;UBERON:0002619,3.47e-26,22;UBERON:0000956,1.65e-24,25;UBERON:0000203,1.65e-24,25;UBERON:0003075,6.89e-24,82;UBERON:0007284,6.89e-24,82;UBERON:0001950,3.17e-23,20;UBERON:0002346,3.90e-22,86;UBERON:0010314,9.47e-22,132;UBERON:0010371,4.79e-21,104;UBERON:0003056,3.60e-19,61;UBERON:0000025,1.51e-16,192;UBERON:0004121,2.38e-14,171;UBERON:0000924,2.38e-14,171;UBERON:0006601,2.38e-14,171;UBERON:0007023,5.04e-14,114;UBERON:0002420,1.02e-11,9;UBERON:0007245,1.02e-11,9;UBERON:0010009,1.02e-11,9;UBERON:0010011,1.02e-11,9;UBERON:0000454,1.02e-11,9;UBERON:0000125,7.08e-11,9;UBERON:0002308,7.08e-11,9;UBERON:0000200,1.16e-10,6;UBERON:0004111,3.63e-10,240;UBERON:0000349,2.73e-09,5;UBERON:0000483,6.83e-09,306;UBERON:0009663,9.05e-09,7;UBERON:0000119,1.26e-08,309;UBERON:0001871,1.91e-08,6;UBERON:0004573,5.48e-08,33;UBERON:0004571,5.48e-08,33;UBERON:0001637,5.62e-08,42;UBERON:0003509,5.62e-08,42;UBERON:0004572,5.62e-08,42;UBERON:0002298,6.10e-08,6;UBERON:0000369,7.12e-08,4;UBERON:0002435,7.12e-08,4;UBERON:0000204,7.12e-08,4;UBERON:0010082,7.12e-08,4;UBERON:0011216,1.83e-07,223;UBERON:0003076,2.69e-07,15;UBERON:0003057,2.69e-07,15 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,2.52687949370732,0,0,0,0,0,2.59909341216098,0.662794751455832,0.672325146451775,1.80808358407193,0,1.95173119516203,0.984968464614303,0.816002764977012,0.313454721478088,1.71741592278634,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,1.44575660953827,2.50668955317945,0.434539556882471,12.7245751528176,1.94653948121054,0,0,0.087834785693126,9.23402482258874,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0.633152558322899,1.32409180813219,1.43418310374407,0.709336764396714,0,0,0,1.24484414159907,0,0,0,0,0,0.936480230490962,0.570471821544449,0.597794722207204,0.117434498643765,0,0.280901613404497,0.408308342509787,0.122834317311768,0.103325781175765,0,0.494533858557114,0,0.718618141816238,0,0.250237039743928,0,2.63386572528503,1.5324389789951,0.901428353439581,0.113432183160021,1.97328599257748,0.85422955527427,1.69545520927649,0.900273288253207,1.44273540933814,1.54584324027377,0.930584281657949,6.24472429292685,1.36411807225678,2.27190396819703,1.47279837827679,0.323292113637624,10.2952781829818,3.22406714328449,0.847802961552438,0.773043412653187,1.36373060295417,0.286804595389004,0,0,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0,5.26801369961403,0,0.301586917234893,0.925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,1.87467667973554,1.51183915378974,0.992425680696705,1.43293636324557,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0,0,0.845302752556,0,0,1.28603687131071,0,0,0,0,0.823240336780769,0.325736184293735,0,0,0.904318131178758,1.74306691720059,0.399891964728228,0,0,0,0.958499421966331,0,1.42636905040718,1.44781306667579,2.26023954805422,5.01370697071708,0,0,0,0,4.31960861178188,1.30139853857622,0,1.67516265334349,0.637938751653163,0,0,0,0.613457458595699,0,0.271265023699736,0,0.356857977594324,0,0.585707074963566,0.601892199455438,0,0,1.99267679560631,2.02806085395873,0.434418072340414,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0.248107807818777,1.53461973288062,0.280660094433074,0.128139149255701,0.511707249066704,0.64341568457443,0,0.771048469013278,3.72879623157567,2.05317890034523,1.03850885836724,0.697262270759755,0,0.601519410909855,0.0920809889358963,0.459257792658427,0.546273504020151,0.393373244878272,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,3.44559322797703,0.650060246036521,0,0.676695028044854,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0.767039646744908,2.49289699810865,0,0,0.382838137483752,0.10115778085555,0,5.66662224295152,1.3940745403212,4.00443654228915,2.12922412126809,0.869932992075073,2.96518750566272,0.715624433709956,0.372158369359667,0.316379424718726,0,0.511795582622668,0,4.45484547096312,0.78494864019923,0.179872457583315,0,0,4.24583211303964,1.58510321173008,2.94880919367287,0.48763373908959,1.46228093778771,2.11300293513511,0.136499911407986,0.424216295861138,4.52032466480971,0,2.65375590096488,1.75380354101505,0.578775534266688,0.655894752046633,0.608731130888112,1.54911749049875,1.12678241012897,0,0.196498082026242,0,1.06428319221179,1.05553817648832,0.987884678879706,0.379473173765715,0.349934720244983,0.577332676353072,0,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.7951676718204,20.9597430451664,0.111308705022906,0,0,0.597743964753209,0,0,0,0,0.622079175323615,0.0898683511473268,0,0,0,0,0,27.1413168906661,30.7062404915728,1.99613798001194,0,0,0,0,0,0,0,0,0.173624994933292,31.8866898892982,22.7927269002021,1.52581736317083,0.552896299656123,2.06883333267483,33.7853511617118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,6.470508766145,0,24.5977668011606,0,0,0,0,0,1.53036380815245,1.13735843331278,0,0,0,0,0,0,0.284609546029793,0.970722711091971,0,0.195984794828755,0,0,3.26773461696071,0,0,0,0.0969890164884194,0,0,0.685209623233754,0.397429223405979,65.779916998158,0,0,0.213452994739353,0,0,0,0,0,0.248505071130865,0,0.407712618220842,0.941425616810999,0,0,16.2113477951643,2.46429682005587,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,41.3519438700838,15.1185780783849,0,0,0,0,0,77.8809316355876,0,0,0.0524545881349981,0,0,0,0,0,0,4.88699641578341,7.77799342081141,11.1039702437199,0,0,1.5334921960688,0,0,0,1.80996138906171,2.11572162788304,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,25.6959772190426,23.9171479207848,13.270238654889,1.14681839138014,1.55300672151593,2.98062734118641,0,0,0,0,0,0,0,1.791057634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| |||
|short_description=p1@PCDHGC5 | |||
}} |
Revision as of 07:54, 22 January 2014
Short description: | p1@PCDHGC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCDHGC5_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -101bp_to_ENST00000252087, NM_018929, NM_032407, uc003lla.1, uc011dbc.1_5end |
EntrezGene: | PCDHGC5 |
HGNC: | 8718 |
UniProt: | Q9Y5F6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.07e-09 | 32 |
muscle precursor cell | 2.42e-07 | 58 |
myoblast | 2.42e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-07 | 58 |
smooth muscle cell | 8.12e-07 | 43 |
smooth muscle myoblast | 8.12e-07 | 43 |