FFCP PHASE1:Hg19::chr4:85420484..85420519,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C63 | |||
|description=CAGE_peak_at_chr4:85420484..85420519,- | |||
|id=chr4:85420484..85420519,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;3.17e-11;3!CL:0002575;2.76e-09;2!CL:0000333;6.27e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.24e-11,3;CL:0002575,2.72e-09,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.06e-08!239;DOID:162!3.27e-08!235;DOID:0050687!2.79e-07!143;DOID:171!2.89e-07!10;DOID:3095!3.42e-07!22;DOID:2994!3.42e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:171;3.85e-14;10!DOID:3095;2.18e-10;22!DOID:2994;2.18e-10;22!DOID:154;4.86e-08;2!DOID:4236;4.86e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.75e-14,10;DOID:3095,2.35e-10,22;DOID:2994,2.35e-10,22;DOID:154,3.38e-08,2;DOID:4236,3.38e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.30e-12!94;UBERON:0001016!1.30e-12!94;UBERON:0001017!2.82e-11!82;UBERON:0000955!5.75e-11!69;UBERON:0006238!5.75e-11!69;UBERON:0005743!3.45e-10!86;UBERON:0000924!1.11e-08!173;UBERON:0006601!1.11e-08!173;UBERON:0003076!6.99e-08!15;UBERON:0003057!6.99e-08!15;UBERON:0002616!9.46e-08!59;UBERON:0001049!1.30e-07!57;UBERON:0005068!1.30e-07!57;UBERON:0006241!1.30e-07!57;UBERON:0007135!1.30e-07!57;UBERON:0004121!4.14e-07!169;UBERON:0000033!8.70e-07!123;UBERON:0000153!8.79e-07!129;UBERON:0007811!8.79e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.54e-11;5!UBERON:0002216;1.54e-11;5!UBERON:0011134;1.54e-11;5!UBERON:0002209;1.54e-11;5!UBERON:0002213;1.54e-11;5!UBERON:0007844;1.54e-11;5!UBERON:0011138;1.54e-11;5!UBERON:0001130;1.54e-11;5!UBERON:0001066;1.54e-11;5!UBERON:0001468;1.54e-11;5!UBERON:0002242;3.17e-11;3!UBERON:0002346;9.90e-10;4!UBERON:0000923;9.90e-10;4!UBERON:0010316;9.90e-10;4!UBERON:0005291;9.90e-10;4!UBERON:0003714;1.18e-08;2!UBERON:0000013;6.27e-08;5!UBERON:0002410;6.27e-08;5!UBERON:0002050;7.44e-08;5!UBERON:0005423;7.44e-08;5!UBERON:0004905;3.06e-07;8!UBERON:0000982;3.06e-07;8!UBERON:0004770;3.06e-07;8!UBERON:0000010;3.65e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,8.98e-12,5;UBERON:0002216,8.98e-12,5;UBERON:0011134,8.98e-12,5;UBERON:0002209,8.98e-12,5;UBERON:0002213,8.98e-12,5;UBERON:0005856,8.98e-12,5;UBERON:0005866,8.98e-12,5;UBERON:0005863,8.98e-12,5;UBERON:0007844,8.98e-12,5;UBERON:0011138,8.98e-12,5;UBERON:0001130,8.98e-12,5;UBERON:0001066,8.98e-12,5;UBERON:0001468,8.98e-12,5;UBERON:0002242,1.24e-11,3;UBERON:0003068,1.24e-11,3;UBERON:0002328,1.24e-11,3;UBERON:0004880,1.24e-11,3;UBERON:0003714,1.23e-08,2;UBERON:0000013,6.14e-08,5;UBERON:0002410,6.14e-08,5;UBERON:0004905,2.21e-07,8;UBERON:0000982,2.21e-07,8;UBERON:0004770,2.21e-07,8;UBERON:0000010,3.66e-07,8 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,1.23766352960047,0.994192127183747,0,0.602694528023977,0,0,0.123121058076788,0,0.313454721478088,0,0.136874425072884,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50401373190767,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0.117434498643765,0,0,2.24569588380383,0.368502951935304,4.33968280938215,0,0,0,0,0.841680569770331,0.125118519871964,1.10825646193673,0.438977620880838,0,0,0,0,0,0.423863802319124,0,0.92747276314595,0,0.37223371266318,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,1.56983518083505,0.87192013766656,0.51336800074665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,1.50051156317903,1.62759014219841,0,0,0,0,0,0,0,0,0,0,12.9228763925409,8.92172901908225,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6970372701606,0,0,0,0.55597265731176,0.286249773483982,1.48863347743867,2.53103539774981,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0,0,0,5.36397112998549,0,0,0.409499734223957,0,0,0,0,0.438450885253763,0.578775534266688,3.9353685122798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973865820823666,1.12318871245384,0.684704037099577,0,0,0,0,0,0,0,0.921722292925374,1.56573275524691,0.667396566847634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,2.22617410045812,0,0.211125408127993,0.398495976502139,0,0,0.613612095012929,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0.254253650292766,0,0,1.45802306691627,1.38899995946634,0,0,0,0.110579259931225,0.591095237907095,0.87754158861589,0,0,0,0,0.23056390438806,0.269272933229316,0,0.31900115973192,0.183195186803725,0,0,0,0.166211681900156,0,0,0,0,0,0.632994193584081,0.163232808159148,0,1.94749775767882,0,0,0,2.37216902944498,3.70691816839509,2.19286093961456,0.202203398942031,0,0,0,0.19566461893209,0,0,1.20990716048664,0,0.442306057399416,0.150323419414493,0.518440956986236,1.32930774541437,0.992975867626496,0.313932918407225,1.19472429772959,0.853828638089378,0,0,0.195984794828755,0.609414446062818,0,0,0,0,0,2.32773639572207,0,0.451961481561065,0.411125773940253,0,0.189932387867636,0,0,0,0.19980960958213,0.288180834308212,0.458146384663663,0,0,1.49103042678519,0,1.08723364858891,0.313808538937,0.407992870545287,2.88950589901519,0,0.547621515567972,0,0,0.788662062837943,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0.717149357331379,0,0,0,0,0,0.864221491201268,0,0,0,2.21504428321048,0.113312091520126,0.146552233678082,0,1.55139547633861,0.66116300871345,0.342173675768659,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.998361463831671,1.4903136705932,3.87376177821446,0.624902039810533,0.606596470166591,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0.251567901752575,0,0,0.453692771289717,0,0,0,0,0,0,0.265841714557995,0.521745061811734,0,0.380805212168795,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0.231522474323834,0.244736704506468,0.895444205407437,0,0.438568099157414,0.176689145945881,0,0,0.76872455576384,0,1.21543982470953,0,0,0,0,1.96565909307848,0.983091635014877,0,1.39991177098451,0.640150378164845,0,0,0.736423801007363,0,0,0,0.323474434190045,8.8068927439302,4.58680480406458,3.56438312903453,4.46407332213534,28.1334184867935,10.6142534414916,0,0,0.80057074828547,0,0,0.192687675289379,0,0.319267718114302,0,0,0.138314504928436,0.161475645631851,1.42769420259154,0,0.707818340086442,0,0,0,3.4517996303005,0.596748666348824,0.0752103283492573,1.41193548092464,0,0,0.163771917510097,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0.351742488719241,0.511049710558381,0,0.336283722218824,0,0,0,0,0,1.01954599465248,0.197318320688547,0.236387681767936,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0,0,0,0,0.121917924982269,0,0.102662806856247,0,0,1.63757624423474,0,0,0,0.219881033490858,0,0,0,0,0,0,0.588925401344836,0.594092800654172,3.3812458206672,0,0,0,0,0.357107877211315,0.352894871715692,0,0,0,0.573358332605805,0,0,0,0.5290268405154,0,0,0,2.14482922219634,3.16870158694717,0.126698501011437,0,0,0.735159196278759,0,0.833565680400634,0.535928260312357,0,0.20686599172379,0,0.952257725854961,0.0645889098360061,0,0,0.445530107947154,4.04234377916439,0.2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| |||
|short_description=p@chr4:85420484..85420519,- | |||
}} |
Revision as of 02:02, 22 January 2014
Short description: | p@chr4:85420484..85420519, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:85420484..85420519, - |
Coexpression cluster: | C63_neuroectodermal_neuroblastoma_carcinoid_peripheral_chronic_neuroepithelioma_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.24e-11 | 3 |
central nervous system pericyte | 2.72e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 8.98e-12 | 5 |
symphysis | 8.98e-12 | 5 |
nonsynovial joint | 8.98e-12 | 5 |
fibrous joint | 8.98e-12 | 5 |
cartilaginous joint | 8.98e-12 | 5 |
developing mesenchymal condensation | 8.98e-12 | 5 |
pre-cartilage condensation | 8.98e-12 | 5 |
cartilaginous condensation | 8.98e-12 | 5 |
cartilage element | 8.98e-12 | 5 |
post-cranial axial skeletal system | 8.98e-12 | 5 |
vertebral column | 8.98e-12 | 5 |
intervertebral disk | 8.98e-12 | 5 |
intervertebral joint | 8.98e-12 | 5 |
nucleus pulposus | 1.24e-11 | 3 |
axial mesoderm | 1.24e-11 | 3 |
notochord | 1.24e-11 | 3 |
chordamesoderm | 1.24e-11 | 3 |
neural tissue | 1.23e-08 | 2 |
sympathetic nervous system | 6.14e-08 | 5 |
autonomic nervous system | 6.14e-08 | 5 |
articulation | 2.21e-07 | 8 |
skeletal joint | 2.21e-07 | 8 |
articular system | 2.21e-07 | 8 |
peripheral nervous system | 3.66e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.75e-14 | 10 |
germ cell and embryonal cancer | 2.35e-10 | 22 |
germ cell cancer | 2.35e-10 | 22 |
mixed cell type cancer | 3.38e-08 | 2 |
carcinosarcoma | 3.38e-08 | 2 |