FFCP PHASE1:Hg19::chr4:80748619..80748630,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=118425 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000504263,NR_026555,uc003hlw.3_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_GDEP_5end | |||
|id=chr4:80748619..80748630,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.00e-18;3!UBERON:0009847;1.12e-17;3!UBERON:0003353;1.12e-17;3 | |||
|ontology_enrichment_disease=DOID:5409!2.61e-08!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.51e-57!2;UBERON:0002757!1.51e-57!2;UBERON:0010134!1.51e-57!2;UBERON:0002784!1.51e-57!2;UBERON:0005408!1.51e-57!2;UBERON:0001899!1.51e-57!2;UBERON:0003296!2.06e-29!4;UBERON:0010133!2.06e-29!4;UBERON:0000966!1.44e-23!5;UBERON:0005388!1.44e-23!5;UBERON:0001802!1.44e-23!5;UBERON:0001894!2.67e-17!7;UBERON:0006222!2.67e-17!7;UBERON:0000970!1.92e-13!20;UBERON:0002104!7.73e-13!21;UBERON:0000020!8.72e-12!23;UBERON:0001032!2.52e-11!24;UBERON:0004456!2.52e-11!24;UBERON:0003056!8.01e-08!61;UBERON:0000019!6.19e-07!19;UBERON:0000047!6.19e-07!19;UBERON:0004088!6.19e-07!19;UBERON:0003072!6.19e-07!19;UBERON:0003071!6.19e-07!19;UBERON:0004128!6.19e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;9.38e-99;2!UBERON:0002757;9.38e-99;2!UBERON:0010134;9.38e-99;2!UBERON:0005408;9.38e-99;2!UBERON:0001899;9.38e-99;2!UBERON:0003296;4.00e-50;4!UBERON:0010133;4.00e-50;4!UBERON:0002784;4.00e-50;4!UBERON:0001894;3.16e-29;7!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0002530;5.25e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.38e-99,2;UBERON:0002757,9.38e-99,2;UBERON:0010134,9.38e-99,2;UBERON:0005408,9.38e-99,2;UBERON:0001899,9.38e-99,2;UBERON:0003296,4.00e-50,4;UBERON:0010133,4.00e-50,4;UBERON:0002784,4.00e-50,4;UBERON:0001894,3.16e-29,7;UBERON:0006222,3.16e-29,7;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0002530,1.93e-08,59;UBERON:0003056,4.28e-08,61;UBERON:0000955,2.91e-07,68;UBERON:0006238,2.91e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89272019466115,29.9292512774753,0,0,0,0,0,0,0,0,0,1.56986185701028,0,0,0,0,0,0.643288897589907,15.1693067263418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@GDEP | |||
}} |
Revision as of 01:51, 22 January 2014
Short description: | p2@GDEP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GDEP_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000504263, NR_026555, uc003hlw.3_5end |
EntrezGene: | GDEP |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 9.38e-99 | 2 |
regional part of epithalamus | 9.38e-99 | 2 |
secretory circumventricular organ | 9.38e-99 | 2 |
circumventricular organ | 9.38e-99 | 2 |
epithalamus | 9.38e-99 | 2 |
gland of diencephalon | 4.00e-50 | 4 |
neuroendocrine gland | 4.00e-50 | 4 |
regional part of diencephalon | 4.00e-50 | 4 |
diencephalon | 3.16e-29 | 7 |
future diencephalon | 3.16e-29 | 7 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
gland | 1.93e-08 | 59 |
pre-chordal neural plate | 4.28e-08 | 61 |
brain | 2.91e-07 | 68 |
future brain | 2.91e-07 | 68 |