FFCP PHASE1:Hg19::chr4:55161684..55161701,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:55161684..55161701,+ | |||
|id=chr4:55161684..55161701,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.26e-20!75;CL:0000055!9.42e-19!180;CL:0002620!6.25e-14!23;CL:0000048!7.64e-09!430;CL:0000723!2.77e-08!436;CL:0000034!3.66e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0000135;1.07e-14;3!CL:0000388;1.07e-14;3!CL:0002195;1.95e-10;2!CL:0002571;1.95e-10;2!CL:0002602;1.95e-10;2!CL:0000153;1.48e-08;9!CL:0000447;1.48e-08;9!CL:0000134;8.87e-08;55!CL:0000138;1.02e-07;6!CL:0000048;1.32e-07;58!CL:0000723;1.44e-07;61!CL:0000499;2.65e-07;28!CL:0002564;5.93e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,6.94e-15,3;CL:0000388,6.94e-15,3;CL:0002195,1.25e-10,2;CL:0002571,1.25e-10,2;CL:0002602,1.74e-10,2;CL:0002320,1.16e-09,361;CL:0000153,1.20e-08,9;CL:0000447,1.20e-08,9;CL:0000058,8.03e-08,6;CL:0000138,8.03e-08,6;CL:0000499,2.15e-07,28;CL:0002564,4.82e-07,3;CL:0000048,5.55e-07,427;CL:0000134,6.62e-07,354;CL:0000723,8.88e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.14e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.75e-09!83;UBERON:0002329!1.75e-09!83;UBERON:0003077!1.75e-09!83;UBERON:0003059!1.75e-09!83;UBERON:0007282!1.75e-09!83;UBERON:0009618!1.75e-09!83;UBERON:0007285!1.75e-09!83;UBERON:0003102!2.27e-08!95;UBERON:0002199!6.39e-08!45;UBERON:0002416!6.39e-08!45;UBERON:0002097!3.33e-07!40;UBERON:0004457!6.89e-07!12;UBERON:0000042!6.89e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;5.21e-15;5!UBERON:0002216;5.21e-15;5!UBERON:0011134;5.21e-15;5!UBERON:0002209;5.21e-15;5!UBERON:0002213;5.21e-15;5!UBERON:0007844;5.21e-15;5!UBERON:0011138;5.21e-15;5!UBERON:0001130;5.21e-15;5!UBERON:0001066;5.21e-15;5!UBERON:0001468;5.21e-15;5!UBERON:0007846;1.07e-14;3!UBERON:0000043;1.07e-14;3!UBERON:0007845;1.07e-14;3!UBERON:0004905;3.29e-14;8!UBERON:0000982;3.29e-14;8!UBERON:0004770;3.29e-14;8!UBERON:0006444;1.95e-10;2!UBERON:0001995;1.95e-10;2!UBERON:0005406;1.95e-10;2!UBERON:0004715;1.95e-10;2!UBERON:0000075;9.22e-10;16!UBERON:0001013;3.84e-08;14!UBERON:0002418;3.17e-07;3!UBERON:0004755;3.17e-07;3!UBERON:0002242;5.93e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,3.71e-15,5;UBERON:0002216,3.71e-15,5;UBERON:0011134,3.71e-15,5;UBERON:0002209,3.71e-15,5;UBERON:0002213,3.71e-15,5;UBERON:0005856,3.71e-15,5;UBERON:0005866,3.71e-15,5;UBERON:0005863,3.71e-15,5;UBERON:0007844,3.71e-15,5;UBERON:0011138,3.71e-15,5;UBERON:0001130,3.71e-15,5;UBERON:0001066,3.71e-15,5;UBERON:0001468,3.71e-15,5;UBERON:0007846,6.94e-15,3;UBERON:0000043,6.94e-15,3;UBERON:0007845,6.94e-15,3;UBERON:0004905,2.51e-14,8;UBERON:0000982,2.51e-14,8;UBERON:0004770,2.51e-14,8;UBERON:0005406,1.09e-10,2;UBERON:0006444,1.74e-10,2;UBERON:0001995,1.74e-10,2;UBERON:0004715,1.74e-10,2;UBERON:0000075,5.94e-10,16;UBERON:0002384,3.42e-09,371;UBERON:0001013,3.23e-08,14;UBERON:0002418,2.94e-07,3;UBERON:0004755,2.94e-07,3;UBERON:0002242,4.82e-07,3;UBERON:0003068,4.82e-07,3;UBERON:0002328,4.82e-07,3;UBERON:0004880,4.82e-07,3 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0.281908808191942,3.00219895059391,0.893922188854576,2.61701557230111,0,0,0.261185628199839,0,0,0,0,2.35156070624089,1.32558950291166,0.672325146451775,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.767175371061182,0.722878304769133,2.00535164254356,2.17269778441236,0,1.94653948121054,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,0.264818361626438,0.860509862246441,0.709336764396714,0,0,0,0,0.67355336034844,0.163461903113459,0,0,0,0.624320153660641,0,0.896692083310806,0.117434498643765,0.485618833104395,0.140450806702248,0.204154171254893,0.368502951935304,0.206651562351531,1.18800285728205,1.48360157567134,0,0,1.68336113954066,0.125118519871964,0.277064115484183,0,0.612975591598039,0.300476117813194,0.226864366320042,0.717558542755448,0.213557388818567,0.847727604638247,1.20036438433761,0.309157587715317,0,0.744467425326359,0.506328996723799,0.389748020644795,0.504867548488229,0.920498986422993,0.969876340912871,1.42003837006646,0.302256294682921,0.508681776931463,0,0.272746120590835,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0.845302752556,0.531876233169741,0,0,0,0,1.42977993658148,1.08524321078289,0,0,2.48774364119782,0,0.301439377059586,0,0.099972991182057,0,0,0,0,1.14861935834114,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,1.2269149171914,1.50051156317903,0.271265023699736,0.831883446123229,0.892144943985809,0.157702415033935,0.585707074963566,0,0,1.03473071292505,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0.640695746278505,0,0.64341568457443,1.48418066444991,0.616838775210622,0.177561725313127,0.164254312027618,0,0.116210378459959,0,0,0,0.34444334449382,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0.275673144969061,0.214840489736547,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,1.88887408098384,0,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0,0,0.571890581771475,0,0.42793898803392,0,0,0.539617372749944,0.54907405947211,0.353437207037059,0,0,0.421258456238981,0,1.21856744815642,0,0.136499911407986,0.424216295861138,5.65040583101214,0,0,0.438450885253763,0,0.655894752046633,0,0,0,0.430234056612155,0.294747123039363,0,0.354761064070598,0.633322905892992,1.31717957183961,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0.766021480529467,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.597743964753209,0.276283915531148,0,0,0,0.933118762985422,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0,0,0.153900517007594,1.02547850262301,0,0,0,0,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0.451961481561065,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.458320848023367,0,0,0.429226048136571,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0.5085370753095,0,0,0.326587360109409,0,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0.488105059607853,0,0.573409195690071,0,0,0,0,0,0,0,0,0,1.04478362020812,0.233713309847224,1.66441758450784,0.189403005275089,2.26411111577318,0,0,1.36107831386915,0.777186002913902,1.03498604992744,0.796483835818512,0.449803112163605,0.310525913752519,0,0.265841714557995,1.04349012362347,0.901545653983311,1.52322084867518,0.813741466409323,0,0.429642228169954,0.928067519756987,1.19428766609585,0,0.343395705182793,2.02049693259551,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0.109209638192014,0,0,0,0,1.27201740261367,0,0,1.41070377476274,2.4499638188256,0,0,0,0,0.252071696221718,0,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.874238242015829,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,2.116107362061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| |||
|short_description=p@chr4:55161684..55161701,+ | |||
}} |
Revision as of 01:05, 22 January 2014
Short description: | p@chr4:55161684..55161701, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr4:55161684..55161701, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 6.94e-15 | 3 |
tendon cell | 6.94e-15 | 3 |
hepatic stem cell | 1.25e-10 | 2 |
hepatic mesenchymal stem cell | 1.25e-10 | 2 |
annulus pulposus cell | 1.74e-10 | 2 |
connective tissue cell | 1.16e-09 | 361 |
GAG secreting cell | 1.20e-08 | 9 |
carbohydrate secreting cell | 1.20e-08 | 9 |
chondroblast | 8.03e-08 | 6 |
chondrocyte | 8.03e-08 | 6 |
stromal cell | 2.15e-07 | 28 |
nucleus pulposus cell of intervertebral disc | 4.82e-07 | 3 |
multi fate stem cell | 5.55e-07 | 427 |
mesenchymal cell | 6.62e-07 | 354 |
somatic stem cell | 8.88e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 3.71e-15 | 5 |
symphysis | 3.71e-15 | 5 |
nonsynovial joint | 3.71e-15 | 5 |
fibrous joint | 3.71e-15 | 5 |
cartilaginous joint | 3.71e-15 | 5 |
developing mesenchymal condensation | 3.71e-15 | 5 |
pre-cartilage condensation | 3.71e-15 | 5 |
cartilaginous condensation | 3.71e-15 | 5 |
cartilage element | 3.71e-15 | 5 |
post-cranial axial skeletal system | 3.71e-15 | 5 |
vertebral column | 3.71e-15 | 5 |
intervertebral disk | 3.71e-15 | 5 |
intervertebral joint | 3.71e-15 | 5 |
dense regular connective tissue | 6.94e-15 | 3 |
tendon | 6.94e-15 | 3 |
regular connective tissue | 6.94e-15 | 3 |
articulation | 2.51e-14 | 8 |
skeletal joint | 2.51e-14 | 8 |
articular system | 2.51e-14 | 8 |
perirenal fat | 1.09e-10 | 2 |
annulus fibrosus | 1.74e-10 | 2 |
fibrocartilage | 1.74e-10 | 2 |
annulus fibrosus disci intervertebralis | 1.74e-10 | 2 |
subdivision of skeletal system | 5.94e-10 | 16 |
connective tissue | 3.42e-09 | 371 |
adipose tissue | 3.23e-08 | 14 |
cartilage tissue | 2.94e-07 | 3 |
skeletal tissue | 2.94e-07 | 3 |
nucleus pulposus | 4.82e-07 | 3 |
axial mesoderm | 4.82e-07 | 3 |
notochord | 4.82e-07 | 3 |
chordamesoderm | 4.82e-07 | 3 |