FFCP PHASE1:Hg19::chr3:108541608..108541624,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50852 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30698 | |||
|TSSclassifier=strong | |||
|UniProt=C9JF66 | |||
|association_with_transcript=0bp_to_ENST00000426646,ENST00000484927,ENST00000493604_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_TRAT1_5end | |||
|id=chr3:108541608..108541624,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.99e-32!140;CL:0000084!2.67e-28!25;CL:0000827!2.67e-28!25;CL:0000791!1.29e-27!18;CL:0000789!1.29e-27!18;CL:0002420!1.29e-27!18;CL:0002419!1.29e-27!18;CL:0000790!1.29e-27!18;CL:0000037!5.36e-25!172;CL:0000566!5.36e-25!172;CL:0002087!7.33e-25!119;CL:0000988!1.83e-22!182;CL:0002031!9.05e-22!124;CL:0002032!1.25e-21!165;CL:0000837!1.25e-21!165;CL:0000838!8.60e-20!52;CL:0000542!3.13e-19!53;CL:0000051!3.13e-19!53;CL:0000625!1.04e-17!11;CL:0000624!2.12e-10!6;CL:0000766!1.05e-09!76;CL:0000763!8.97e-07!112;CL:0000049!8.97e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.78e-47;25!CL:0000791;8.20e-45;18!CL:0000789;8.20e-45;18!CL:0002419;8.20e-45;18!CL:0000625;2.54e-28;11!CL:0000624;3.53e-16;6!CL:0000542;8.18e-15;53!CL:0000898;4.45e-09;3!CL:0000226;2.33e-08;3!CL:0000842;2.33e-08;3!CL:0000767;4.06e-08;3!CL:0000623;4.65e-08;3!CL:0002087;1.05e-07;104!CL:0000094;2.00e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.96e-47,25;CL:0000827,6.96e-47,25;CL:0000791,8.78e-45,18;CL:0000789,8.78e-45,18;CL:0002420,8.78e-45,18;CL:0002419,8.78e-45,18;CL:0000790,8.78e-45,18;CL:0000625,2.61e-28,11;CL:0000838,1.54e-27,52;CL:0000542,7.08e-27,53;CL:0000051,7.08e-27,53;CL:0000738,2.64e-24,136;CL:0002087,5.56e-19,115;CL:0000037,1.32e-18,168;CL:0000988,4.48e-17,177;CL:0000624,3.49e-16,6;CL:0002032,2.13e-15,161;CL:0000837,2.13e-15,161;CL:0002031,3.00e-15,120;CL:0000898,4.34e-09,3;CL:0000226,2.19e-08,3;CL:0000842,2.19e-08,3;CL:0000767,4.32e-08,3;CL:0000623,4.32e-08,3;CL:0000825,4.32e-08,3;CL:0000094,1.98e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;8.20e-45;18!CL:0000051;8.18e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.22e-15!102;UBERON:0003061!1.22e-15!102;UBERON:0002193!6.18e-15!112;UBERON:0000178!6.92e-13!15;UBERON:0000179!6.92e-13!15;UBERON:0000463!6.92e-13!15;UBERON:0007023!1.05e-09!115;UBERON:0004177!5.39e-08!7;UBERON:0002370!2.10e-07!4;UBERON:0005058!2.10e-07!4;UBERON:0009113!2.10e-07!4;UBERON:0003295!2.10e-07!4;UBERON:0005562!2.10e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.55e-18;15!UBERON:0000179;6.55e-18;15!UBERON:0000463;6.55e-18;15!UBERON:0002390;4.01e-11;32!UBERON:0002193;1.59e-08;42!UBERON:0002370;9.39e-07;2!UBERON:0005058;9.39e-07;2!UBERON:0009113;9.39e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.06e-18,15;UBERON:0000179,6.06e-18,15;UBERON:0000463,6.06e-18,15;UBERON:0002370,3.10e-11,4;UBERON:0005058,3.10e-11,4;UBERON:0009113,3.10e-11,4;UBERON:0003295,3.10e-11,4;UBERON:0005562,3.10e-11,4;UBERON:0004177,2.36e-09,7;UBERON:0005057,2.36e-09,7;UBERON:0002193,2.54e-08,108;UBERON:0002390,5.19e-08,98;UBERON:0003061,5.19e-08,98;UBERON:0003351,1.83e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,7.47392126012918,5.75744097145819,2.01260960310899,0,0,0,0,0,0.293600439334847,2.21598163412751,1.00272223735071,1.73608696572681,0.447830948479849,1.29557466407592,1.03030227053675,0.145398238779565,0,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0.47296445977717,0,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,1.92557416245656,0,0,0.598390972864896,0,0.870627715885752,0,0,0,0,0.217188844705117,0.605399502633369,3.31449872388808,0,0.211255286311942,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,1.12101712596307,0.263384084775077,30.2933045975303,9.03924754323079,8.42966145897988,22.7373633731322,16.9479578649467,16.5706732007157,7.79306913631645,11.1410456885174,10.6058126690941,15.2858387262699,14.6234086433108,4.48319619039863,4.42201781703586,18.2526074110081,17.1337011027226,28.9803085735052,31.881611079843,30.2321135741376,17.7710390468461,54.0485564667391,42.1542542962113,44.6715679127419,57.1824503964076,34.4050647470024,24.7411712465439,24.7117531556577,11.4437090499107,9.98295567004463,27.4847598415161,34.0959242943384,27.9183518953156,9.67712367478716,4.27904313253612,6.22744936696036,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0.324547393654683,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4780405847809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,0,1.00993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12085143993527,4.53170748464433,4.74380664690938,3.33691894327346,0,0,0,0,0,0.749007023947182,0,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5076019592166,5.1771408196468,3.62873696531711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,3.04468565539302,0.764637207142375,1.13929437434833,11.9115887728895,10.2840568271549,1.29694662238543,2.16012574895246,11.1037524681198,0,0,0,0,0,15.0109289465154,3.98565681822056,4.59032554295478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,2.70786572014353,0,0,0,0,0.690503839458535,4.7896618469388,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0,0,17.3728606932752,0.784901281975124,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,2.99004755189545,0,0.828478110694391,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55888247071511,0.398594520940089,0.327130788511688,0,0,0,9.59939500103664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.177404740325278,0.576169937778896,0,0.0679697329768317,0,0,0,0.470958557103084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62065732026684,0.655678681511872,0,0,0,0,0,0,0,3.00748537535531,0.386747327841463,0,0,0,0,0,0.917458566809082,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0.714193294391221,30.0338430737428,18.1258165743905,0,0.12729431655633,0,0,0,2.1552656964668,0.860666464712116,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | |||
|short_description=p2@TRAT1 | |||
}} |
Revision as of 20:25, 21 January 2014
Short description: | p2@TRAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAT1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000426646, ENST00000484927, ENST00000493604_5end |
EntrezGene: | TRAT1 |
HGNC: | 30698 |
UniProt: | C9JF66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 6.96e-47 | 25 |
pro-T cell | 6.96e-47 | 25 |
mature alpha-beta T cell | 8.78e-45 | 18 |
alpha-beta T cell | 8.78e-45 | 18 |
immature T cell | 8.78e-45 | 18 |
mature T cell | 8.78e-45 | 18 |
immature alpha-beta T cell | 8.78e-45 | 18 |
CD8-positive, alpha-beta T cell | 2.61e-28 | 11 |
lymphoid lineage restricted progenitor cell | 1.54e-27 | 52 |
lymphocyte | 7.08e-27 | 53 |
common lymphoid progenitor | 7.08e-27 | 53 |
leukocyte | 2.64e-24 | 136 |
nongranular leukocyte | 5.56e-19 | 115 |
hematopoietic stem cell | 1.32e-18 | 168 |
hematopoietic cell | 4.48e-17 | 177 |
CD4-positive, alpha-beta T cell | 3.49e-16 | 6 |
hematopoietic oligopotent progenitor cell | 2.13e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 3.00e-15 | 120 |
naive T cell | 4.34e-09 | 3 |
single nucleate cell | 2.19e-08 | 3 |
mononuclear cell | 2.19e-08 | 3 |
basophil | 4.32e-08 | 3 |
natural killer cell | 4.32e-08 | 3 |
pro-NK cell | 4.32e-08 | 3 |
granulocyte | 1.98e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 6.06e-18 | 15 |
haemolymphatic fluid | 6.06e-18 | 15 |
organism substance | 6.06e-18 | 15 |
thymus | 3.10e-11 | 4 |
hemolymphoid system gland | 3.10e-11 | 4 |
thymic region | 3.10e-11 | 4 |
pharyngeal gland | 3.10e-11 | 4 |
thymus primordium | 3.10e-11 | 4 |
hemopoietic organ | 2.36e-09 | 7 |
immune organ | 2.36e-09 | 7 |
hemolymphoid system | 2.54e-08 | 108 |
hematopoietic system | 5.19e-08 | 98 |
blood island | 5.19e-08 | 98 |
pharyngeal epithelium | 1.83e-07 | 6 |