FFCP PHASE1:Hg19::chr3:49507674..49507758,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1605 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2666 | |||
|TSSclassifier=strong | |||
|UniProt=C9JLH6,C9JYS1,C9JQL4,C9JEH2,C9JEN1,C9JY76 | |||
|association_with_transcript=0bp_to_ENST00000419218,ENST00000428779,ENST00000430636,ENST00000431960,ENST00000435508,ENST00000452060,ENST00000452317,ENST00000461492,ENST00000461987,ENST00000466701_5end | |||
|description=CAGE_peak_1_at_DAG1_5end | |||
|id=chr3:49507674..49507758,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.49e-27!254;CL:0002321!6.59e-15!248;CL:0000220!7.71e-15!246;CL:0000213!2.03e-08!57;CL:0000215!2.03e-08!57;CL:0000076!2.78e-07!62;CL:1000449!4.79e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000449;6.73e-08;15!CL:1000497;6.37e-07;17!CL:0002518;6.37e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.98e-27,253;CL:0002321,5.36e-15,250;CL:0000213,8.45e-09,58;CL:0000215,8.45e-09,58;CL:1000449,6.49e-08,15;CL:0000076,5.14e-07,63;CL:1000497,6.29e-07,17;CL:0002518,6.29e-07,17;CL:0002078,8.74e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.34e-10!106;DOID:0050687!4.18e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.34e-10,106;DOID:0050687,4.18e-10,143 | |||
|ontology_enrichment_uberon=UBERON:0000475!5.89e-18!365;UBERON:0000468!6.85e-17!659;UBERON:0000119!4.60e-16!312;UBERON:0000481!7.35e-16!347;UBERON:0000477!2.18e-15!286;UBERON:0000483!3.24e-15!309;UBERON:0000064!8.89e-14!219;UBERON:0004111!4.27e-13!241;UBERON:0000467!2.02e-12!625;UBERON:0000480!3.35e-12!626;UBERON:0009569!8.65e-12!113;UBERON:0000062!5.96e-11!511;UBERON:0000025!7.82e-11!194;UBERON:0002417!1.15e-10!61;UBERON:0000916!1.15e-10!61;UBERON:0004121!5.70e-10!169;UBERON:0000924!5.98e-10!173;UBERON:0006601!5.98e-10!173;UBERON:0000922!6.34e-10!612;UBERON:0005172!2.71e-09!55;UBERON:0005173!2.71e-09!55;UBERON:0002050!3.31e-09!605;UBERON:0005423!3.31e-09!605;UBERON:0000923!3.90e-09!604;UBERON:0005291!3.90e-09!604;UBERON:0006598!3.90e-09!604;UBERON:0002532!3.90e-09!604;UBERON:0000466!6.11e-09!126;UBERON:0003914!8.00e-09!118;UBERON:0001048!1.52e-08!168;UBERON:0003104!1.60e-08!238;UBERON:0009142!1.60e-08!238;UBERON:0002100!2.55e-08!216;UBERON:0005177!3.28e-08!107;UBERON:0000033!4.27e-07!123;UBERON:0004211!4.79e-07!16;UBERON:0001285!4.79e-07!16;UBERON:0007684!4.79e-07!16;UBERON:0003220!4.79e-07!16;UBERON:0004208!4.79e-07!16;UBERON:0000353!6.51e-07!17;UBERON:0004876!6.99e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;6.73e-08;15!UBERON:0004819;6.73e-08;15!UBERON:0001285;6.73e-08;15!UBERON:0007684;6.73e-08;15!UBERON:0002113;1.66e-07;24!UBERON:0011143;1.66e-07;24!UBERON:0000353;1.71e-07;15!UBERON:0001851;1.83e-07;15!UBERON:0006554;4.70e-07;30!UBERON:0001008;4.70e-07;30!UBERON:0000489;5.46e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,4.73e-15,309;UBERON:0000483,3.12e-14,306;UBERON:0004111,1.64e-13,240;UBERON:0009569,4.65e-12,112;UBERON:0000025,3.79e-11,192;UBERON:0002417,3.97e-11,60;UBERON:0000916,3.97e-11,60;UBERON:0005172,9.66e-10,54;UBERON:0005173,9.66e-10,54;UBERON:0004121,3.04e-09,171;UBERON:0000924,3.04e-09,171;UBERON:0006601,3.04e-09,171;UBERON:0003914,4.33e-09,117;UBERON:0005177,8.84e-09,101;UBERON:0002100,1.78e-08,199;UBERON:0000922,3.80e-08,592;UBERON:0011216,4.14e-08,223;UBERON:0001048,4.28e-08,160;UBERON:0004211,6.49e-08,15;UBERON:0009773,6.49e-08,15;UBERON:0001231,6.49e-08,15;UBERON:0001285,6.49e-08,15;UBERON:0007684,6.49e-08,15;UBERON:0004208,6.49e-08,15;UBERON:0005423,9.49e-08,581;UBERON:0006555,1.69e-07,16;UBERON:0004819,1.69e-07,16;UBERON:0000353,1.72e-07,15;UBERON:0001851,1.82e-07,15;UBERON:0002113,5.69e-07,26;UBERON:0003918,5.69e-07,26;UBERON:0011143,5.69e-07,26;UBERON:0005095,5.69e-07,26;UBERON:0007687,5.69e-07,26 | |||
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| |||
|short_description=p1@DAG1 | |||
}} |
Revision as of 18:55, 21 January 2014
Short description: | p1@DAG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DAG1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000419218, ENST00000428779, ENST00000430636, ENST00000431960, ENST00000435508, ENST00000452060, ENST00000452317, ENST00000461492, ENST00000461987, ENST00000466701_5end |
EntrezGene: | DAG1 |
HGNC: | 2666 |
UniProt: | C9JLH6C9JYS1C9JQL4C9JEH2C9JEN1C9JY76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.98e-27 | 253 |
embryonic cell | 5.36e-15 | 250 |
lining cell | 8.45e-09 | 58 |
barrier cell | 8.45e-09 | 58 |
epithelial cell of nephron | 6.49e-08 | 15 |
squamous epithelial cell | 5.14e-07 | 63 |
kidney cell | 6.29e-07 | 17 |
kidney epithelial cell | 6.29e-07 | 17 |
meso-epithelial cell | 8.74e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cell layer | 4.73e-15 | 309 |
epithelium | 3.12e-14 | 306 |
anatomical conduit | 1.64e-13 | 240 |
subdivision of trunk | 4.65e-12 | 112 |
tube | 3.79e-11 | 192 |
abdominal segment of trunk | 3.97e-11 | 60 |
abdomen | 3.97e-11 | 60 |
abdomen element | 9.66e-10 | 54 |
abdominal segment element | 9.66e-10 | 54 |
ectoderm-derived structure | 3.04e-09 | 171 |
ectoderm | 3.04e-09 | 171 |
presumptive ectoderm | 3.04e-09 | 171 |
epithelial tube | 4.33e-09 | 117 |
trunk region element | 8.84e-09 | 101 |
trunk | 1.78e-08 | 199 |
embryo | 3.80e-08 | 592 |
organ system subdivision | 4.14e-08 | 223 |
primordium | 4.28e-08 | 160 |
nephron epithelium | 6.49e-08 | 15 |
renal tubule | 6.49e-08 | 15 |
nephron tubule | 6.49e-08 | 15 |
nephron | 6.49e-08 | 15 |
uriniferous tubule | 6.49e-08 | 15 |
nephrogenic mesenchyme | 6.49e-08 | 15 |
developing anatomical structure | 9.49e-08 | 581 |
excretory tube | 1.69e-07 | 16 |
kidney epithelium | 1.69e-07 | 16 |
parenchyma | 1.72e-07 | 15 |
cortex | 1.82e-07 | 15 |
kidney | 5.69e-07 | 26 |
kidney mesenchyme | 5.69e-07 | 26 |
upper urinary tract | 5.69e-07 | 26 |
kidney rudiment | 5.69e-07 | 26 |
kidney field | 5.69e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.34e-10 | 106 |
cell type cancer | 4.18e-10 | 143 |