FFCP PHASE1:Hg19::chr20:30153800..30153854,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81502 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16435 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENST00000493364_5end | |||
|description=CAGE_peak_3_at_HM13_5end | |||
|id=chr20:30153800..30153854,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.18e-27!43;CL:0000066!2.01e-25!254;CL:0000223!5.82e-23!59;CL:0002368!3.01e-15!13;CL:0002251!3.18e-15!21;CL:0002202!1.82e-09!9;CL:0002632!1.82e-09!9;CL:0002159!5.79e-09!13;CL:0000076!1.34e-08!62;CL:0000244!1.73e-07!4;CL:0000731!1.73e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.92e-22;42!CL:0002368;3.73e-22;13!CL:0002202;3.84e-16;9!CL:0002632;3.84e-16;9!CL:0002251;1.24e-13;20!CL:0002328;2.60e-10;3!CL:0000307;9.50e-10;3!CL:0002621;1.09e-09;3!CL:0002327;5.85e-08;4!CL:0000244;1.05e-07;4!CL:0000731;1.05e-07;4!CL:0000575;1.50e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.05e-30,42;CL:0000223,1.42e-22,58;CL:0002368,4.29e-22,13;CL:0000066,4.28e-20,253;CL:0002202,4.37e-16,9;CL:0002632,4.37e-16,9;CL:0002251,1.13e-13,20;CL:0002328,2.86e-10,3;CL:0000068,9.51e-10,3;CL:0000069,9.51e-10,3;CL:0000307,9.51e-10,3;CL:0000377,9.51e-10,3;CL:0002621,1.18e-09,3;CL:0002327,5.65e-08,4;CL:0000244,1.10e-07,4;CL:0000731,1.10e-07,4;CL:0000076,1.12e-07,63;CL:0000575,1.60e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;1.94e-13;58!CL:0000377;9.50e-10;3!UBERON:0008814;2.31e-07;2!UBERON:0010056;2.31e-07;2 | |||
|ontology_enrichment_disease=DOID:1749!5.10e-17!14;DOID:305!9.04e-15!106;DOID:0050687!4.88e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.56e-21;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-21,14;DOID:305,8.91e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.57e-26!169;UBERON:0000925!4.57e-26!169;UBERON:0006595!4.57e-26!169;UBERON:0001007!1.03e-20!155;UBERON:0001555!1.03e-20!155;UBERON:0007026!1.03e-20!155;UBERON:0004921!6.41e-16!129;UBERON:0004185!6.41e-16!129;UBERON:0000161!2.45e-13!35;UBERON:0000077!2.60e-12!130;UBERON:0001004!4.25e-12!72;UBERON:0000344!2.47e-10!12;UBERON:0005911!7.03e-10!82;UBERON:0000065!1.02e-09!53;UBERON:0003729!2.74e-09!5;UBERON:0001008!3.33e-09!45;UBERON:0007196!4.27e-09!14;UBERON:0001558!4.27e-09!14;UBERON:0000365!4.65e-09!5;UBERON:0000162!2.18e-08!14;UBERON:0001353!2.18e-08!14;UBERON:0000163!2.18e-08!14;UBERON:0006866!2.18e-08!14;UBERON:0000164!2.18e-08!14;UBERON:0000931!2.18e-08!14;UBERON:0006554!2.35e-08!44;UBERON:0003343!3.96e-08!4;UBERON:0004785!3.96e-08!4;UBERON:0005153!4.14e-08!37;UBERON:0001041!9.15e-08!98;UBERON:0004122!1.07e-07!15;UBERON:0005910!1.90e-07!6;UBERON:0000072!2.45e-07!46;UBERON:0001046!4.65e-07!19;UBERON:0005178!7.82e-07!34;UBERON:0002224!7.82e-07!34;UBERON:0000166!9.38e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;6.46e-15;15!UBERON:0001558;6.46e-15;15!UBERON:0000486;1.03e-11;12!UBERON:0003126;1.94e-10;7!UBERON:0001005;1.94e-10;7!UBERON:0004815;2.60e-10;3!UBERON:0002031;2.60e-10;3!UBERON:0000365;2.64e-10;5!UBERON:0001949;1.09e-09;3!UBERON:0005178;3.07e-09;34!UBERON:0002224;3.07e-09;34!UBERON:0000161;3.40e-09;19!UBERON:0000166;3.40e-09;19!UBERON:0005181;7.65e-09;35!UBERON:0000344;8.67e-09;20!UBERON:0005911;1.09e-08;36!UBERON:0005910;1.38e-08;6!UBERON:0003729;2.74e-08;13!UBERON:0003343;3.02e-08;4!UBERON:0004785;3.02e-08;4!UBERON:0001911;5.85e-08;4!UBERON:0004807;1.28e-07;22!UBERON:0001555;1.95e-07;54!UBERON:0000165;2.66e-07;28!UBERON:0006562;2.66e-07;2!UBERON:0004921;4.35e-07;33!UBERON:0001255;8.39e-07;2!UBERON:0001556;8.39e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.81e-23,160;UBERON:0000925,7.81e-23,160;UBERON:0006595,7.81e-23,160;UBERON:0001007,1.32e-17,145;UBERON:0001555,1.32e-17,145;UBERON:0007026,1.32e-17,145;UBERON:0000161,1.10e-15,36;UBERON:0004921,5.64e-15,118;UBERON:0007196,7.50e-15,15;UBERON:0001558,7.50e-15,15;UBERON:0001004,2.85e-14,74;UBERON:0000065,1.47e-10,54;UBERON:0003126,2.06e-10,7;UBERON:0001005,2.06e-10,7;UBERON:0000365,2.61e-10,5;UBERON:0004815,2.86e-10,3;UBERON:0002031,2.86e-10,3;UBERON:0005178,3.75e-10,34;UBERON:0002224,3.75e-10,34;UBERON:0000166,8.64e-10,22;UBERON:0005181,8.68e-10,35;UBERON:0001949,1.18e-09,3;UBERON:0000344,8.25e-09,20;UBERON:0005910,1.37e-08,6;UBERON:0005157,1.99e-08,47;UBERON:0003729,2.78e-08,13;UBERON:0003343,2.92e-08,4;UBERON:0004785,2.92e-08,4;UBERON:0005153,5.09e-08,37;UBERON:0000072,5.57e-08,47;UBERON:0001911,5.65e-08,4;UBERON:0005333,5.65e-08,4;UBERON:0008425,5.65e-08,4;UBERON:0005311,5.65e-08,4;UBERON:0001041,7.48e-08,87;UBERON:0005911,9.76e-08,82;UBERON:0003102,1.79e-07,99;UBERON:0000162,2.34e-07,14;UBERON:0001353,2.34e-07,14;UBERON:0000163,2.34e-07,14;UBERON:0006866,2.34e-07,14;UBERON:0000164,2.34e-07,14;UBERON:0000931,2.34e-07,14;UBERON:0000165,5.06e-07,29;UBERON:0000930,5.06e-07,29;UBERON:0001046,6.64e-07,19;UBERON:0004122,8.05e-07,15;UBERON:0001255,8.27e-07,2;UBERON:0001556,8.27e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1136334692682,2.10844143144775,8.50434223383612,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,4.00724817121796,11.1235332835329,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60456474173561,1.09098448236334,3.72845974005705,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.768251997860379,3.37205259772859,1.00528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0.850650583454319,10.2992301108276,7.55648240136301,4.60059214998253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41620704970512,17.4953878978203,0,0,0.131124414959424,0,0.231046011313244,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79326254546837,3.65161127993702,0.765676274967505,5.2602046044886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,5.3624182042863,2.17781969722645,0,2.15252686335615,8.42357378338128,5.76459199597678,0.229723400206959,0,0,0,0.238231775457789,0,0,0,0,0,0,4.16568367167754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,16.1119057208048,0,1.28236427328014,0,0,0,0,0,0,0,0,5.80346586256048,3.0510438035132,0.945550727071745,0,0,0,0,0,0,0,0,0,0,35.831902279601,1.00035336054936,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.1822435590025,0,0,1.99052386215701,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0.182454789215666,6.65259704369105,0.242780379534093,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,12.1510572793828,8.00944700539704,0.17472666824203,0,0.0967563312890851,0,0,4.84945082442097,0,1.35588444468319,0,0,0,1.95551382734803,0.240476460754601,0.213452994739353,2.99714414373195,0.432271251462318,0,0,0,0,12.0203957654566,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,12.7465181287721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0.365377795142688,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16161013012681,0,0,0,0.506827321959218,0.256241518587947,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,3.07734916982778,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7091686037164,0.825788063434183,6.9702867438238,12.4767719442365,0.381382095467167,0,0,0,0,0,0,0,2.06998520703863,0,0,0,0,0,0,0,0,10.093231783528,0,0,0,0,0,0,0,0,0,2.2456829767954,0.333694205676207,0.313972371402056,0,0,0,0.431855182437243,0,0,0,0,0,0,1.45051314914126,0,0,0,0,0,0.423387050190929,0,0,0,0.223710863595585,0.098150233615243,2.92603019957447,0,0,0,0,0,0,0,0,0,0,2.00652811080656,0,0,0,0,0,0,0,0,0,0,0,36.2464495369485,0.352894871715692,1.36410323371586,0.730336388246517,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0.0620747142958579,0,0.0636471582781649,0,2.61260097476354,0,2.42467390852515,2.00822175099494,1.66330178273007,3.90735689332678,0,0,0.0898252021065869,0,0,1.22068853494722,2.66302709674205,0,0 | |||
|short_description=p3@HM13 | |||
}} |
Revision as of 10:40, 21 January 2014
Short description: | p3@HM13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HM13_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000493364_5end |
EntrezGene: | HM13 |
HGNC: | 16435 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.05e-30 | 42 |
endodermal cell | 1.42e-22 | 58 |
respiratory epithelial cell | 4.29e-22 | 13 |
epithelial cell | 4.28e-20 | 253 |
epithelial cell of tracheobronchial tree | 4.37e-16 | 9 |
epithelial cell of lower respiratory tract | 4.37e-16 | 9 |
epithelial cell of alimentary canal | 1.13e-13 | 20 |
bronchial epithelial cell | 2.86e-10 | 3 |
duct epithelial cell | 9.51e-10 | 3 |
branched duct epithelial cell | 9.51e-10 | 3 |
tracheal epithelial cell | 9.51e-10 | 3 |
tracheoblast | 9.51e-10 | 3 |
gingival epithelial cell | 1.18e-09 | 3 |
mammary gland epithelial cell | 5.65e-08 | 4 |
transitional epithelial cell | 1.10e-07 | 4 |
urothelial cell | 1.10e-07 | 4 |
squamous epithelial cell | 1.12e-07 | 63 |
corneal epithelial cell | 1.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.13e-21 | 14 |
carcinoma | 8.91e-09 | 106 |