FFCP PHASE1:Hg19::chr2:21233959..21233966,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=strong | |||
|UniProt=P04114 | |||
|association_with_transcript=-28bp_to_X03326_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_50_at_APOB_5end | |||
|id=chr2:21233959..21233966,- | |||
|ontology_enrichment_celltype=CL:0000181!1.12e-50!12;CL:0000417!1.12e-50!12;CL:0000668!1.12e-50!12;CL:0000414!1.12e-50!12;CL:0000412!1.12e-50!12;CL:0000182!1.12e-50!12;CL:0000223!3.79e-16!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.68e-74;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.90e-74,12;CL:0000223,1.53e-15,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.09e-36;11!UBERON:0009497;9.12e-31;13!UBERON:0001041;1.19e-13;30!UBERON:0003104;4.25e-13;31!CL:0000223;2.08e-11;58 | |||
|ontology_enrichment_disease=DOID:178!1.42e-13!1;DOID:326!1.42e-13!1;DOID:3978!1.42e-13!1;DOID:3394!1.42e-13!1;DOID:5844!1.42e-13!1;DOID:7!6.17e-08!39;DOID:114!1.99e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.70e-41!19;UBERON:0006925!1.70e-41!19;UBERON:0008836!1.70e-41!19;UBERON:0008835!9.38e-36!22;UBERON:0003894!9.38e-36!22;UBERON:0009854!3.58e-34!23;UBERON:0007499!2.18e-31!25;UBERON:0009497!2.18e-31!25;UBERON:0000015!2.18e-31!25;UBERON:0002423!2.18e-31!25;UBERON:0006235!2.18e-31!25;UBERON:0004161!2.18e-31!25;UBERON:0005057!3.73e-30!26;UBERON:0009856!3.73e-30!26;UBERON:0002365!3.50e-25!31;UBERON:0002330!3.50e-25!31;UBERON:0002368!3.18e-22!35;UBERON:0003929!6.07e-22!54;UBERON:0000949!4.03e-17!45;UBERON:0002530!3.26e-16!59;UBERON:0004921!1.31e-14!129;UBERON:0004185!1.31e-14!129;UBERON:0005911!4.68e-14!82;UBERON:0005172!7.25e-14!55;UBERON:0005173!7.25e-14!55;UBERON:0002417!2.01e-12!61;UBERON:0000916!2.01e-12!61;UBERON:0001007!6.68e-12!155;UBERON:0001555!6.68e-12!155;UBERON:0007026!6.68e-12!155;UBERON:0004119!8.77e-11!169;UBERON:0000925!8.77e-11!169;UBERON:0006595!8.77e-11!169;UBERON:0000490!7.56e-08!138;UBERON:0001041!2.06e-07!98;UBERON:0000160!2.73e-07!27;UBERON:0000077!8.78e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.06e-63;19!UBERON:0006925;2.06e-63;19!UBERON:0002423;2.77e-48;25!UBERON:0002365;3.53e-38;31!UBERON:0002330;3.53e-38;31!UBERON:0002368;3.27e-32;33!UBERON:0000949;6.32e-26;43!UBERON:0005172;8.03e-15;52!UBERON:0005173;8.03e-15;52!UBERON:0002530;1.81e-13;57!UBERON:0002417;1.65e-12;58!UBERON:0000916;1.65e-12;58!UBERON:0001007;1.23e-11;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.79e-63,19;UBERON:0006925,1.79e-63,19;UBERON:0008836,1.79e-63,19;UBERON:0008835,7.16e-55,22;UBERON:0003894,7.16e-55,22;UBERON:0009854,1.68e-52,23;UBERON:0007499,2.49e-48,25;UBERON:0009497,2.49e-48,25;UBERON:0000015,2.49e-48,25;UBERON:0002423,2.49e-48,25;UBERON:0006235,2.49e-48,25;UBERON:0004161,2.49e-48,25;UBERON:0009856,1.75e-46,26;UBERON:0002365,4.89e-39,31;UBERON:0002330,4.89e-39,31;UBERON:0002368,1.31e-34,35;UBERON:0000949,5.70e-27,45;UBERON:0003929,1.66e-22,54;UBERON:0005172,1.66e-22,54;UBERON:0005173,1.66e-22,54;UBERON:0002530,1.30e-20,59;UBERON:0002417,2.85e-20,60;UBERON:0000916,2.85e-20,60;UBERON:0005911,7.37e-15,82;UBERON:0001041,5.23e-14,87;UBERON:0004921,2.56e-13,118;UBERON:0005177,4.53e-12,101;UBERON:0009569,6.96e-11,112;UBERON:0001007,7.53e-11,145;UBERON:0001555,7.53e-11,145;UBERON:0007026,7.53e-11,145;UBERON:0003914,2.04e-10,117;UBERON:0005256,5.46e-10,122;UBERON:0004119,7.84e-10,160;UBERON:0000925,7.84e-10,160;UBERON:0006595,7.84e-10,160;UBERON:0000490,3.20e-08,148;UBERON:0001048,1.35e-07,160;UBERON:0003104,1.35e-07,160;UBERON:0009142,1.35e-07,160;UBERON:0011216,6.23e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9430538304014,1.96565443335525,2.95394953340702,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,2.75741138075283,2.71972332657849,1.41547442093788,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90517903781507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p50@APOB | |||
}} |
Revision as of 02:00, 21 January 2014
Short description: | p50@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_50_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -28bp_to_X03326_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.90e-74 | 12 |
endodermal cell | 1.53e-15 | 58 |