FFCP PHASE1:Hg19::chr17:79989572..79989600,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5881 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9803 | |||
|TSSclassifier=strong | |||
|UniProt=P60763 | |||
|association_with_transcript=40bp_to_ENST00000306897,NM_005052,uc002kdf.2_5end | |||
|coexpression_cluster_id=C3700 | |||
|description=CAGE_peak_2_at_RAC3_5end | |||
|id=chr17:79989572..79989600,+ | |||
|ontology_enrichment_celltype=CL:0002321!8.84e-27!248;CL:0000220!5.62e-26!246;CL:0000066!1.20e-15!254;CL:0000055!2.42e-14!180;CL:0000222!5.79e-14!119;CL:0000133!2.91e-12!59;CL:0000221!1.57e-11!71;CL:0000393!1.69e-11!60;CL:0000211!1.69e-11!60;CL:0000183!6.76e-11!59;CL:0000115!1.07e-09!35;CL:0002319!6.57e-09!25;CL:0000187!8.31e-09!54;CL:0002078!9.11e-09!44;CL:1000449!1.27e-08!16;CL:0002139!2.24e-08!24;CL:0000680!2.25e-08!57;CL:0000056!2.25e-08!57;CL:0000355!2.25e-08!57;CL:0000333!3.93e-08!41;CL:1000497!8.12e-08!18;CL:0002518!8.12e-08!18;CL:0000071!1.01e-07!18;CL:0002546!1.01e-07!18;CL:0000075!3.10e-07!27;CL:0000192!4.16e-07!42;CL:0000514!4.16e-07!42;CL:0002681!5.52e-07!13;CL:0002584!5.52e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.25e-09;25!CL:0000115;5.56e-09;36!CL:0002139;1.71e-08;24!CL:1000449;3.40e-08;15!CL:0000071;8.20e-08;18!CL:1000497;2.18e-07;17!CL:0002518;2.18e-07;17!CL:0000075;2.87e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.16e-27,250;CL:0000222,7.03e-15,121;CL:0000066,9.59e-15,253;CL:0000133,1.87e-12,59;CL:0000221,4.15e-12,72;CL:0000393,4.52e-12,61;CL:0000211,4.52e-12,61;CL:0000115,1.63e-10,36;CL:0000187,2.58e-09,55;CL:0002078,3.17e-09,45;CL:0002319,3.44e-09,25;CL:0000680,7.30e-09,58;CL:0000056,7.30e-09,58;CL:0000355,7.30e-09,58;CL:0002139,1.86e-08,24;CL:0000333,2.87e-08,41;CL:1000449,3.57e-08,15;CL:0000071,8.50e-08,18;CL:0002546,8.50e-08,18;CL:0000192,1.36e-07,43;CL:0000514,1.36e-07,43;CL:1000497,2.26e-07,17;CL:0002518,2.26e-07,17;CL:0000075,2.65e-07,27 | |||
|ontology_enrichment_development_v019=CL:0002546;8.20e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.68e-21!312;UBERON:0000483!1.22e-20!309;UBERON:0000481!1.76e-14!347;UBERON:0000475!5.39e-14!365;UBERON:0002049!2.83e-12!79;UBERON:0007798!2.83e-12!79;UBERON:0000025!6.58e-12!194;UBERON:0000924!8.69e-11!173;UBERON:0006601!8.69e-11!173;UBERON:0000477!2.65e-10!286;UBERON:0004121!3.57e-10!169;UBERON:0004111!3.97e-10!241;UBERON:0000073!8.50e-10!94;UBERON:0001016!8.50e-10!94;UBERON:0000490!1.12e-09!138;UBERON:0000064!2.75e-09!219;UBERON:0003914!5.12e-09!118;UBERON:0004290!9.07e-09!70;UBERON:0004211!1.27e-08!16;UBERON:0001285!1.27e-08!16;UBERON:0007684!1.27e-08!16;UBERON:0003220!1.27e-08!16;UBERON:0004208!1.27e-08!16;UBERON:0000914!1.43e-08!83;UBERON:0002329!1.43e-08!83;UBERON:0003077!1.43e-08!83;UBERON:0003059!1.43e-08!83;UBERON:0007282!1.43e-08!83;UBERON:0009618!1.43e-08!83;UBERON:0007285!1.43e-08!83;UBERON:0000055!1.80e-08!69;UBERON:0005256!2.36e-08!143;UBERON:0002100!2.36e-08!216;UBERON:0006555!3.13e-08!17;UBERON:0005103!3.13e-08!17;UBERON:0000083!3.13e-08!17;UBERON:0009201!3.13e-08!17;UBERON:0004819!3.13e-08!17;UBERON:0006553!3.13e-08!17;UBERON:0003074!3.13e-08!17;UBERON:0003060!3.13e-08!17;UBERON:0005743!3.39e-08!86;UBERON:0000922!5.25e-08!612;UBERON:0000080!6.06e-08!18;UBERON:0002120!6.06e-08!18;UBERON:0004875!6.06e-08!18;UBERON:0005721!6.06e-08!18;UBERON:0005754!6.06e-08!18;UBERON:0007297!6.06e-08!18;UBERON:0001981!6.10e-08!60;UBERON:0007500!6.10e-08!60;UBERON:0004537!6.10e-08!60;UBERON:0006965!6.10e-08!60;UBERON:0000486!9.02e-08!82;UBERON:0001986!1.01e-07!18;UBERON:0004638!1.01e-07!18;UBERON:0004852!1.01e-07!18;UBERON:0001017!1.34e-07!82;UBERON:0002113!2.36e-07!27;UBERON:0003918!2.36e-07!27;UBERON:0005095!2.36e-07!27;UBERON:0007687!2.36e-07!27;UBERON:0000033!2.40e-07!123;UBERON:0001134!2.70e-07!61;UBERON:0002036!2.70e-07!61;UBERON:0003082!2.70e-07!61;UBERON:0000487!4.06e-07!22;UBERON:0001225!5.52e-07!13;UBERON:0008987!5.52e-07!13;UBERON:0000489!8.94e-07!32;UBERON:0003104!8.96e-07!238;UBERON:0009142!8.96e-07!238;UBERON:0002050!9.07e-07!605;UBERON:0005423!9.07e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;1.58e-09;33!UBERON:0006555;3.40e-08;15!UBERON:0004819;3.40e-08;15!UBERON:0001285;3.40e-08;15!UBERON:0007684;3.40e-08;15!UBERON:0003914;6.32e-08;74!UBERON:0004638;8.20e-08;18!UBERON:0001986;8.20e-08;18!UBERON:0004852;8.20e-08;18!UBERON:0002113;2.42e-07;24!UBERON:0011143;2.42e-07;24!UBERON:0000487;2.80e-07;22 | |||
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| |||
|short_description=p2@RAC3 | |||
}} |
Revision as of 18:06, 20 January 2014
Short description: | p2@RAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAC3_5end |
Coexpression cluster: | C3700_occipital_brain_temporal_duodenum_parietal_Renal_Neurons |
Association with transcript: | 40bp_to_ENST00000306897, NM_005052, uc002kdf.2_5end |
EntrezGene: | RAC3 |
HGNC: | 9803 |
UniProt: | P60763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.16e-27 | 250 |
mesodermal cell | 7.03e-15 | 121 |
epithelial cell | 9.59e-15 | 253 |
neurectodermal cell | 1.87e-12 | 59 |
ectodermal cell | 4.15e-12 | 72 |
electrically responsive cell | 4.52e-12 | 61 |
electrically active cell | 4.52e-12 | 61 |
endothelial cell | 1.63e-10 | 36 |
muscle cell | 2.58e-09 | 55 |
meso-epithelial cell | 3.17e-09 | 45 |
neural cell | 3.44e-09 | 25 |
muscle precursor cell | 7.30e-09 | 58 |
myoblast | 7.30e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.30e-09 | 58 |
endothelial cell of vascular tree | 1.86e-08 | 24 |
migratory neural crest cell | 2.87e-08 | 41 |
epithelial cell of nephron | 3.57e-08 | 15 |
blood vessel endothelial cell | 8.50e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.50e-08 | 18 |
smooth muscle cell | 1.36e-07 | 43 |
smooth muscle myoblast | 1.36e-07 | 43 |
kidney cell | 2.26e-07 | 17 |
kidney epithelial cell | 2.26e-07 | 17 |
columnar/cuboidal epithelial cell | 2.65e-07 | 27 |