FFCP PHASE1:Hg19::chr17:18266797..18266817,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6470 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10850 | |||
|TSSclassifier=strong | |||
|UniProt=P34896,B4DPM9 | |||
|association_with_transcript=0bp_to_ENST00000316694,ENST00000539052_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SHMT1_5end | |||
|id=chr17:18266797..18266817,- | |||
|ontology_enrichment_celltype=CL:0000066!4.20e-17!254;CL:0000223!3.13e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.61e-16,253;CL:0000223,4.34e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0006595;3.46e-07;86!UBERON:0008947;7.36e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.23e-13!106;DOID:0050687!2.97e-09!143;DOID:162!3.94e-08!235;DOID:14566!1.40e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.74e-14,106;DOID:0050687,8.49e-10,143;DOID:162,1.61e-07,235;DOID:14566,5.19e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.08e-14!129;UBERON:0004185!1.08e-14!129;UBERON:0001007!1.36e-14!155;UBERON:0001555!1.36e-14!155;UBERON:0007026!1.36e-14!155;UBERON:0000077!4.03e-13!130;UBERON:0000063!4.66e-13!97;UBERON:0004119!7.12e-13!169;UBERON:0000925!7.12e-13!169;UBERON:0006595!7.12e-13!169;UBERON:0000481!9.96e-13!347;UBERON:0001041!1.13e-12!98;UBERON:0000064!5.88e-12!219;UBERON:0005177!1.09e-11!107;UBERON:0003104!2.95e-11!238;UBERON:0009142!2.95e-11!238;UBERON:0000072!1.02e-10!46;UBERON:0000475!1.43e-09!365;UBERON:0001048!1.53e-09!168;UBERON:0009569!2.88e-09!113;UBERON:0000466!4.71e-09!126;UBERON:0001004!5.81e-09!72;UBERON:0000065!1.28e-08!53;UBERON:0008947!1.55e-08!38;UBERON:0003258!1.55e-08!38;UBERON:0000464!1.18e-07!104;UBERON:0000062!1.34e-07!511;UBERON:0005172!1.85e-07!55;UBERON:0005173!1.85e-07!55;UBERON:0001557!6.27e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;5.30e-08;37!UBERON:0001737;1.53e-07;9!UBERON:0001557;1.53e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.16e-17,145;UBERON:0001555,8.16e-17,145;UBERON:0007026,8.16e-17,145;UBERON:0004921,1.58e-16,118;UBERON:0001041,3.02e-15,87;UBERON:0004119,6.84e-14,160;UBERON:0000925,6.84e-14,160;UBERON:0006595,6.84e-14,160;UBERON:0005177,4.82e-11,101;UBERON:0001048,5.71e-11,160;UBERON:0000072,1.23e-10,47;UBERON:0009569,3.03e-10,112;UBERON:0011216,1.10e-09,223;UBERON:0008947,2.26e-09,38;UBERON:0003258,2.26e-09,38;UBERON:0001004,1.84e-08,74;UBERON:0000065,2.72e-08,54;UBERON:0001737,1.83e-07,9;UBERON:0005172,2.16e-07,54;UBERON:0005173,2.16e-07,54;UBERON:0001557,2.46e-07,19;UBERON:0002100,3.88e-07,199;UBERON:0002417,5.77e-07,60;UBERON:0000916,5.77e-07,60 | |||
|phase1_expression=0.908391896352783,22.9087560563352,2.25527046553554,1.0007329835313,3.12872766099101,0,32.9289841618804,1.26343974685366,50.9311974989685,1.47440361900905,1.39560233594486,0.873765488520689,0.263766978228454,2.59909341216098,0.994192127183747,0,0,1.46062018077475,0.487932798790507,2.21617904538218,2.65200898617529,4.07491137921514,2.86235987131057,4.10623275218653,2.38531015230125,0.61130724598361,1.23150884174919,0.787107813136792,0,0,0.928896739896456,4.59710612239464,0.90361775633475,2.21852406100073,4.02829443017569,4.12290774213522,0.880801318004542,0,0.200544447470142,0,14.5545058255951,9.06902264853143,12.8787783817093,0.145398238779565,0,0,0,0,0.309706370895104,0.28769239232215,0,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0.605399502633369,0.368277635987565,0,0.211255286311942,0,0.209658645508376,0.22465726229299,0,0,0.285012743741249,0,0.547992461293902,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,1.12101712596307,1.58030450865046,0.393419540227666,0.393010762749165,0.411202997999018,0.334372990781356,0,0.473447805734733,0,0,0,0,0.812411591295047,0.512365278902701,1.04047478047903,0.493313713811028,0.552700035571697,0.579606171470105,0.14828656316206,0,0,0.453237370790265,0.766440987203842,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0.602300476311091,0,0,0.473554504088034,0.821127996921047,0.604820229674197,0.534880391567015,0.434473211648397,4.87613732627923,2.68280343881454,0.383587685530591,0,0,0.579386075843295,0,0,3.30871860074237,2.88248216701333,3.68906099911129,19.7778404001546,5.46442932438813,1.48313777113772,0.324547393654683,0,0.26591592103773,0,0,0,0.993812036833525,0,1.04142150482278,0.56530794192401,2.51699661725944,0.550236083880135,1.04497483268405,0.258416759169329,0.71153252537342,0,0,0,1.46437234528902,0.367663080345869,0,0.803697554556718,1.12264686313085,2.0270066486998,3.06633274931766,0,0.549605231791222,0,0,4.36094052142534,0,0.379891534993739,0.529636723252875,0.286836620748814,1.06400514659507,0,0,0.49333509683432,0,0.269421344139376,1.14423332179421,0.605429710579726,0,0,0.936480230490962,1.71141546463335,0,1.29177948508141,0.809364721840658,1.54495887372473,1.22492502752936,1.22834317311768,0.413303124703062,0,0,0.910161361938026,2.87447256726495,2.02003336744879,2.00189631795143,1.10825646193673,0,0.30648779579902,0.150238058906597,0.567160915800105,0.358779271377724,0,0,0.600182192168805,0.412210116953756,0,0,1.18143432568886,0.487185025805993,0.757301322732344,0,0,0,0.302256294682921,0.847802961552438,1.35282597214308,0.272746120590835,1.43402297694502,1.70763188581434,3.71083351300159,2.78865462886844,1.45125477021519,4.54177531576131,1.45990943630332,0,1.28648187638577,1.38134921352481,0,2.16563844500876,5.79703320195235,5.56329477257736,4.82022059766964,7.279402200338,6.10062443458737,4.50814176311084,5.39325232640658,4.12065076763227,5.00171304030308,0.738155454624648,1.40241773803446,0,0,275.058425563373,30.4676437170064,123.475090496413,3.97316789473185,2.09080345523293,1.02940686179115,0.768251997860379,1.1240175325762,5.32803553781643,3.88871469665824,0.651616610620649,5.19967392639789,0,2.43453850447661,0.352226082707465,0.866198686566443,0.925971025153221,0.761016608938393,7.90204397959275,4.29243081047436,1.23108503043699,0.468008530278475,0.891786973732369,0.93733833986777,0,0.992425680696705,0.895585227028483,0.290633938513962,5.75074018747817,0,0.264145302039678,0,0.576479813667846,0.50496973370552,3.17489471460845,4.20187268114105,4.68869788840188,5.13217338068116,2.46785982487976,1.50171528921959,1.14330573052231,0.560655421726804,0.43596006883328,0.8800594298514,0.258543431515556,14.3062578340753,0,0.531876233169741,0,1.02882949704857,0,2.39779961114489,0.428933980974443,0.542621605391443,1.64648067356154,0.325736184293735,0,1.58390374586686,0,0,0.499864955910285,1.2162378064119,0.502257091432126,0,0,0,1.42636905040718,0.579125226670317,1.02738161275192,1.61154866915906,1.2329365839288,0,0.862510299438069,0.256686072559497,0,0,0,0.335032530668698,0,0,0,0,2.08575535922538,1.50051156317903,0,0.415941723061614,0.178428988797162,0.315404830067869,0.234282829985426,0.601892199455438,0,1.03473071292505,0,0.368738337083406,1.12948698808508,0.587403472388222,0,0.206768026122887,0.431428401637234,0.74709290462411,1.21251028578504,1.66435439510497,0.604780586659361,0.248107807818777,0,0.280660094433074,0.256278298511402,0,0,0,1.23367755042124,0,0.98552587216571,0,0.929683027679674,3.86750238693191,0.601519410909855,1.01289087829486,1.83703117063371,0.728364672026868,0.262248829918848,2.70719767744447,0.924184045252977,5.49044838423799,1.46139224653261,0.73886140225013,3.4120015221269,1.19065593693561,2.15915916102139,0,2.70946437543853,7.5253466078228,3.56826782263054,4.98645605357235,8.05949116999842,0.657779629937804,0.522870902049801,3.59030175162945,0.656029291399411,0.650756789328606,20.1960382829536,1.55668090191184,1.98022799809411,1.14853107599234,0.650060246036521,0,0.290012154876366,1.69453478826109,1.68854042198743,2.48105830472155,2.0409846524972,2.46528379654188,1.96021243057032,0.623224249527161,0.330569830721956,0.192190067365106,0.638063562472921,0.50578890427775,0.464845549297286,0.31481234683064,0,0,0.532306030317022,0,0,0.143124886741991,2.60510858551767,0.949138274156178,2.85945290885737,1.79128453917934,0.42793898803392,0.318203247925937,0.78494864019923,0.719489830333259,1.92175920815238,2.82749765629647,0.202182481573316,0,2.10629228119491,1.95053495635836,0,0,0.272999822815972,0.424216295861138,2.26016233240486,0,0,0,2.31510213706675,5.9030527684197,0.202910376962704,0.30982349809975,0.281695602532241,0.860468113224309,0.294747123039363,0,0.709522128141196,0,0.987884678879706,3.41525856389144,1.74967360122491,1.73199802905922,6.03272047982209,2.17781969722645,22.4062245848734,0.43050537267123,0,1.33029046061003,0,0,0.764637207142375,0.569647187174163,0.238231775457789,0,0.648473311192717,0,1.58625035258854,2.45695363593188,0.962479855263359,3.92064345569651,0.185803175125719,1.44269212976445,2.56110636054291,2.71024663638998,0.997896857164083,2.2980644415884,1.2700414963433,0,0.842391534340376,1.14117339516596,0.783399478865116,2.50634477090067,0.50787533340481,0.802940375518498,0.403599414382095,2.55507742614196,2.06103206853459,1.53620382154229,0.447352215784832,1.66849141711908,2.73543333562856,1.11362469558097,1.23087398947712,0.270455678475983,0.66614393599564,0,2.43282702530686,4.68826173670061,0.485442086998054,1.5602073798847,1.98895302764489,0.95497793895076,0.890894042497916,0.614321404198464,0,0.844016498463076,1.33570446027487,0.16480387422676,1.68900326502395,0.996239941255349,1.93398740871803,0.755798243562828,1.32949287252801,0.123084805461069,0.311039587661807,2.42644548097782,1.43216939740487,0,0.394573622547734,0,0,1.93866549219044,1.39152147242777,0,1.5625665665114,1.57427999993152,4.34999745260876,2.04828206913899,4.06805840468426,2.36387681767936,1.03423011972439,0.874813840149763,0.694499979733169,0,0.60298219312704,0,2.43274371848694,2.06883333267483,1.09692698576986,0.435753854075961,6.55291598109435,1.53900517007594,0,3.22789466143284,7.18061155278177,1.73835795075213,2.23300811812344,0.824378340616761,1.5991043280559,2.04386596391473,0.627921025580099,0.166211681900156,1.1279783030859,1.17637520590644,0.167821586975843,0.948768663620925,1.11255605286265,1.05499032264014,4.57051862845614,5.08871057162187,1.94749775767882,1.99052386215701,8.49192619232056,1.22206028986725,0,0.494255755786011,0.835375596043643,2.22423738836234,1.60515529459758,1.1713222286267,0.91227394607833,0.391329237864179,2.91336455440911,2.36750641709634,1.20990716048664,0,2.27471686662557,2.55549813004637,3.5253985075064,0,0,0.627865836814451,0,1.70765727617876,0.138674673013139,1.90915712168644,1.07791637155815,5.48473001456536,2.62090002363045,0.51595809741485,3.19295893253981,3.43519790305072,4.4342346808733,6.013319022282,0.176512253383001,1.58186518546373,0.274083849293502,1.39100228192093,0.949661939338181,4.10657903743086,0.320635281006135,2.34798294213288,0.39961921916426,1.58499458869517,2.1761953271524,1.20116498503375,0,0.248505071130865,2.59263438078475,0.815425236441684,0.313808538937,2.3459590056354,0.577901179803038,1.20084057741958,2.46429682005587,1.27746588066972,0,0.262887354279314,1.39641200636127,0.687481272035051,0.717873024576814,1.39775300349294,0,0.89268582976749,0.671834724867263,0,5.82479747637269,7.40561913687902,6.09877352020632,5.45968705218898,1.77169466726548,1.18542664892098,0.795229689809303,0.817220436669454,4.34033500855552,2.33817042215297,2.07720169014593,0,0,0.303747783290123,8.05043250238239,56.2672750116275,14.7921938540695,0.105600336519406,0.896436696664224,5.56554072226391,0.714695326373367,0.662091970365432,2.28841683889275,0.542999601753713,0,0,0,0.410462603746695,0.170388021785422,3.85261111168427,88.957205842596,42.4022044519108,1.16354660725395,2.11572162788304,1.53978154095896,4.9337051562167,2.88326013932776,0,0.414239055347196,1.9846640872478,0.988058159489721,1.70509637733254,0.638341257770182,11.424373870759,9.52621597286261,5.20787480497885,13.442777859102,0.628216385000937,0.886068179966986,0.610131324509816,0.876336514945499,1.72022758707021,1.44207766997908,1.17983165588629,0.276697269872462,2.74956897516635,1.97143852804142,0,0,3.74667924645505,1.59413131471908,0.298509605773748,0.934853239388898,0,1.89403005275089,2.26411111577318,0,0,0.907385542579434,1.08806040407946,0.443565449968902,0.63718706865481,0,0.931577741257556,0,0,0,0.150257608997218,0,0,0.181848659202559,1.61115835563733,0.464033759878494,0.398095888698616,1.20008329398946,0,0.336749488765919,0,0.963099152036517,0.857766365499703,0.521988583930423,0.680117776536817,1.62065732026684,0,0.537266523244462,3.08801447160972,1.53498834705095,3.7104720648635,1.92914038270915,4.73038833828603,2.30617366729152,3.79973375904318,2.43087964941906,0.829550616910385,0,0,0.163565394255844,0.982829546539238,2.45772908753719,2.11312123358627,0.999936979274649,1.17360902663555,0.344429959321631,1.13503190713367,0.184105950251841,0.419638523158333,1.24415452006595,0.383683113910955,0.539124056983409,0.471797825567689,0.218419276384028,1.52759276958623,0.212574920101683,0.619678821295011,0.558644917973244,0,0.867479195013787,1.60114149657094,0,0.3062454773532,0.834979926253974,0,1.27707087245721,0.41023272848151,0,0.760729777106397,0.484426936895553,0,1.57036349601641,1.65157612686837,5.68628655417205,1.61735932610474,0,2.0710797781803,1.5913297769302,1.27857558193737,0.60511520611056,3.12605604493237,3.40478702825849,0,0.443568258651136,0.472763092328763,0,1.44680757550829,0.570742291745161,0,5.48257766857182,1.48863353516788,0.175871244359621,1.66091155931474,0,0.672567444437648,0.606965604236632,0,0.887023701626388,0.806637912890455,0.685952037749674,1.15548546060614,0.394636641377094,3.30942754475111,1.55723962648897,1.25588948560822,0.628462359664008,2.24217730651031,0.913158720509496,6.26190014534002,0.47775168788705,2.14429632529969,4.89842196371452,2.44106993273063,0.347716544605159,0,1.24329698497822,2.3900586793153,2.76503864725637,0.860454717640555,1.53831600949735,0.596493833314104,0.846774100381858,3.43660302816075,0.62041277132864,0,0.335566295393377,2.15930513953535,2.31644057466312,1.94228651156368,0.513314034281235,2.3196288626764,6.31424290976881,7.95394175771159,0.795803100645473,0,1.01651473835064,0.879524133963433,1.05673990496671,8.18046075944213,1.31135736302374,0.470317296361523,0.245148321753905,0,1.37415926980462,0.891139200981258,2.5359343655004,0,5.82700291475092,3.22289439867886,0.799529247399431,1.60698544745092,0,3.20965466756673,1.46067277649303,2.2936464170227,1.43339583151451,1.57771562193185,1.08786384305464,0,1.0580536810308,0.743990036333503,0.924351257262837,0,2.27099564703142,2.29457701123761,3.54755802832024,5.91535212503494,2.13773924212448,4.59474497674225,1.50424523575425,2.34913964476542,1.60778478093707,1.65833887891756,2.27552590896169,9.16906122174218,1.90451545170992,3.48780113114433,3.60033342915976,1.45771421354797,3.30965223046457,2.82964064541507,6.31378568901188,0.342233301085281,5.52286834719618,2.79716601031438,2.66128285236811,1.62806537221949,0.426909383510862,0,0.359300808426348,0,0.244482888365733,0.813792356631477,1.33151354837103,3.01910690386539,0.320568492303233 | |||
|short_description=p3@SHMT1 | |||
}} |
Revision as of 14:10, 20 January 2014
Short description: | p3@SHMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHMT1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000316694, ENST00000539052_5end |
EntrezGene: | SHMT1 |
HGNC: | 10850 |
UniProt: | P34896B4DPM9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.61e-16 | 253 |
endodermal cell | 4.34e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
digestive system | 8.16e-17 | 145 |
digestive tract | 8.16e-17 | 145 |
primitive gut | 8.16e-17 | 145 |
subdivision of digestive tract | 1.58e-16 | 118 |
foregut | 3.02e-15 | 87 |
endoderm-derived structure | 6.84e-14 | 160 |
endoderm | 6.84e-14 | 160 |
presumptive endoderm | 6.84e-14 | 160 |
trunk region element | 4.82e-11 | 101 |
primordium | 5.71e-11 | 160 |
segment of respiratory tract | 1.23e-10 | 47 |
subdivision of trunk | 3.03e-10 | 112 |
organ system subdivision | 1.10e-09 | 223 |
respiratory primordium | 2.26e-09 | 38 |
endoderm of foregut | 2.26e-09 | 38 |
respiratory system | 1.84e-08 | 74 |
respiratory tract | 2.72e-08 | 54 |
larynx | 1.83e-07 | 9 |
abdomen element | 2.16e-07 | 54 |
abdominal segment element | 2.16e-07 | 54 |
upper respiratory tract | 2.46e-07 | 19 |
trunk | 3.88e-07 | 199 |
abdominal segment of trunk | 5.77e-07 | 60 |
abdomen | 5.77e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.74e-14 | 106 |
cell type cancer | 8.49e-10 | 143 |
cancer | 1.61e-07 | 235 |
disease of cellular proliferation | 5.19e-07 | 239 |