FFCP PHASE1:Hg19::chr16:66413154..66413184,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1003 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1764 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-22bp_to_uc002eon.1_5end | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_4_at_CDH5_5end | |||
|id=chr16:66413154..66413184,+ | |||
|ontology_enrichment_celltype=CL:0000039!1.85e-17!7;CL:0000586!1.85e-17!7;CL:0000066!1.32e-13!254;CL:0002541!1.73e-10!3;CL:0000239!2.11e-10!3;CL:1000615!2.11e-10!3;CL:0002306!2.11e-10!3;CL:1000507!3.48e-09!12;CL:1000494!3.48e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.91e-21;7!CL:0000586;1.91e-21;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.02e-21,7;CL:0000586,2.02e-21,7 | |||
|ontology_enrichment_development_v019=UBERON:0008947;9.21e-19;29!UBERON:0003124;8.14e-11;1 | |||
|ontology_enrichment_disease=DOID:305!1.92e-20!106;DOID:0050687!1.98e-18!143;DOID:1749!2.25e-10!14;DOID:162!2.21e-09!235;DOID:14566!5.15e-09!239 | |||
|ontology_enrichment_disease_v019=DOID:1799;6.73e-11;1!DOID:10165;6.73e-11;1!DOID:1798;6.73e-11;1!DOID:3095;6.06e-07;22!DOID:2994;6.06e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.37e-13,143;DOID:305,3.43e-12,106;DOID:1799,6.73e-11,1;DOID:10165,6.73e-11,1;DOID:1798,6.73e-11,1;DOID:162,3.63e-07,235;DOID:14566,5.82e-07,239;DOID:3095,6.16e-07,22;DOID:2994,6.16e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.37e-30!9;UBERON:0001557!3.89e-23!19;UBERON:0000072!5.00e-13!46;UBERON:0000065!7.79e-11!53;UBERON:0000476!1.73e-10!3;UBERON:0000920!1.73e-10!3;UBERON:0008947!1.91e-10!38;UBERON:0003258!1.91e-10!38;UBERON:0006853!2.11e-10!3;UBERON:0007685!2.11e-10!3;UBERON:0004134!2.11e-10!3;UBERON:0001004!2.41e-09!72;UBERON:0009773!3.48e-09!12;UBERON:0001231!3.48e-09!12;UBERON:0004810!3.48e-09!12;UBERON:0000077!5.57e-09!130;UBERON:0001041!6.52e-09!98;UBERON:0001007!7.73e-09!155;UBERON:0001555!7.73e-09!155;UBERON:0007026!7.73e-09!155;UBERON:0001264!1.37e-08!10;UBERON:0003922!1.37e-08!10;UBERON:0003923!1.37e-08!10;UBERON:0003924!1.37e-08!10;UBERON:0003921!1.37e-08!10;UBERON:0004119!1.90e-08!169;UBERON:0000925!1.90e-08!169;UBERON:0006595!1.90e-08!169;UBERON:0003886!2.49e-08!63;UBERON:0004921!5.27e-08!129;UBERON:0004185!5.27e-08!129;UBERON:0003124!6.24e-08!7;UBERON:0001045!8.98e-08!11;UBERON:0002553!3.60e-07!70;UBERON:0000064!9.35e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.42e-35;9!UBERON:0001557;3.42e-35;9!UBERON:0000072;3.76e-13;37!UBERON:0000065;2.26e-11;44!UBERON:0001264;9.20e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.64e-35,9;UBERON:0001557,2.37e-22,19;UBERON:0000072,3.21e-14,47;UBERON:0008947,4.21e-14,38;UBERON:0003258,4.21e-14,38;UBERON:0000065,3.23e-12,54;UBERON:0001264,8.96e-09,10;UBERON:0001004,1.40e-08,74;UBERON:0001041,4.13e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573609190778008,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0.828147600278907,0.505754070234305,0.723033089650446,1.10293972732394,1.08939722046203,1.42362371466658,1.07865046528132,2.35465758150415,1.53898862778556,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.802025881213139,0,0,0,0,0.451199612907412,0.847168708148562,0,0,0.211103257785751,0,0,0,0,0,0,0.509752546090077,0.831076008928724,0.223874754722178,0,0,0,0,0,7.21287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62564786291911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0.508507300585533,4.49136595359079,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,17.0617289247165,50.7130690915213,14.124158349861,0.638002319463839,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,1.32930774541437,0,0.627865836814451,1.19472429772959,0,0,0,0.391969589657511,0.174118413160805,0,0,0.0967563312890851,0.146178634172371,0,0,0,0,0,0,0,0.586654148204409,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,2.07946199070609,0,0,0,0,0,0,64.1671401479485,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.150412512616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06196181689645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,1.19463369395298,0.250707539292375,0,0,0,0,0,0,0.129177819672012,0.186224142887574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@CDH5 | |||
}} |
Revision as of 11:47, 20 January 2014
Short description: | p4@CDH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDH5_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | -22bp_to_uc002eon.1_5end |
EntrezGene: | CDH5 |
HGNC: | 1764 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.02e-21 | 7 |
germ cell | 2.02e-21 | 7 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.64e-35 | 9 |
upper respiratory tract | 2.37e-22 | 19 |
segment of respiratory tract | 3.21e-14 | 47 |
respiratory primordium | 4.21e-14 | 38 |
endoderm of foregut | 4.21e-14 | 38 |
respiratory tract | 3.23e-12 | 54 |
pancreas | 8.96e-09 | 10 |
respiratory system | 1.40e-08 | 74 |
foregut | 4.13e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.37e-13 | 143 |
carcinoma | 3.43e-12 | 106 |
islet cell tumor | 6.73e-11 | 1 |
endocrine pancreas cancer | 6.73e-11 | 1 |
pancreatic endocrine carcinoma | 6.73e-11 | 1 |
cancer | 3.63e-07 | 235 |
disease of cellular proliferation | 5.82e-07 | 239 |
germ cell and embryonal cancer | 6.16e-07 | 22 |
germ cell cancer | 6.16e-07 | 22 |