FFCP PHASE1:Hg19::chr14:74815145..74815202,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20223 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H8Y1 | |||
|association_with_transcript=0bp_to_NM_018228,uc001xpw.3_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_VRTN_5end | |||
|id=chr14:74815145..74815202,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.40e-34!5;CL:0000039!3.65e-15!7;CL:0000586!3.65e-15!7;CL:0000540!1.01e-10!6;CL:0000031!1.01e-10!6;CL:0000404!1.01e-10!6;CL:0000047!3.74e-08!8;CL:0002563!3.78e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.66e-63;5!CL:0002321;4.13e-21;15!CL:0000540;1.94e-19;6!CL:0000404;1.94e-19;6!CL:0000039;3.00e-16;7!CL:0000586;3.00e-16;7!CL:0000148;5.39e-12;10!CL:0000147;1.01e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.66e-63,5;CL:0000540,2.07e-19,6;CL:0000031,2.07e-19,6;CL:0000404,2.07e-19,6;CL:0000039,3.00e-16,7;CL:0000586,3.00e-16,7;CL:0000047,1.01e-14,8;CL:0000148,5.39e-12,10;CL:0000541,5.39e-12,10;CL:0000147,1.01e-08,14;CL:0000133,4.29e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.77e-20;10!UBERON:0005564;8.77e-20;10!CL:0000031;1.94e-19;6 | |||
|ontology_enrichment_disease=DOID:3095!7.87e-14!22;DOID:2994!7.87e-14!22;DOID:3371!5.70e-08!1;DOID:4549!5.70e-08!1;DOID:5861!5.70e-08!1;DOID:6496!5.70e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.07e-19;22!DOID:2994;1.07e-19;22!DOID:3371;1.25e-13;1!DOID:4549;1.25e-13;1!DOID:5861;1.25e-13;1!DOID:6496;1.25e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.04e-19,22;DOID:2994,1.04e-19,22;DOID:3371,1.25e-13,1;DOID:4549,1.25e-13,1;DOID:5861,1.25e-13,1;DOID:6496,1.25e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.44e-20!11;UBERON:0000473!4.00e-20!8;UBERON:0003101!1.87e-13!22;UBERON:0000079!1.87e-13!22;UBERON:0000991!1.17e-10!21;UBERON:0009196!1.17e-10!21;UBERON:0009117!1.17e-10!21;UBERON:0005564!1.17e-10!21;UBERON:0004176!3.76e-10!22;UBERON:0000029!9.72e-08!1;UBERON:0001154!1.18e-07!1;UBERON:0001153!1.18e-07!1;UBERON:0001301!1.54e-07!1;UBERON:0002372!1.75e-07!1;UBERON:0001961!1.75e-07!1;UBERON:0001744!1.75e-07!1;UBERON:0001735!1.75e-07!1;UBERON:0001242!3.78e-07!4;UBERON:0001262!3.78e-07!4;UBERON:0004786!3.78e-07!4;UBERON:0004808!3.78e-07!4;UBERON:0001277!3.78e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.68e-14;8!UBERON:0003135;1.46e-10;11!UBERON:0000922;6.90e-10;49!UBERON:0000991;1.42e-09;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.68e-14,8;UBERON:0003135,1.46e-10,11;UBERON:0000991,1.42e-09,21;UBERON:0009196,1.42e-09,21;UBERON:0009117,1.42e-09,21;UBERON:0005564,1.42e-09,21;UBERON:0004176,3.78e-09,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,83.1860675803841,102.843100217473,86.9130692663998,43.2266599414095,98.6574526923707,74.0904038923935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,23.2996174465561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,81.1803399748347,80.7356492825762,81.4263062537203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.1071185421807,2.29457701123761,81.8472316533883,15.4003132910392,9.88704399482574,12.0382318390647,0.752122617877125,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@VRTN | |||
}} |
Revision as of 21:00, 11 January 2014
Short description: | p1@VRTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VRTN_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_NM_018228, uc001xpw.3_5end |
EntrezGene: | VRTN |
HGNC: | 20223 |
UniProt: | Q9H8Y1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.66e-63 | 5 |
neuron | 2.07e-19 | 6 |
neuroblast | 2.07e-19 | 6 |
electrically signaling cell | 2.07e-19 | 6 |
germ line cell | 3.00e-16 | 7 |
germ cell | 3.00e-16 | 7 |
neuronal stem cell | 1.01e-14 | 8 |
melanocyte | 5.39e-12 | 10 |
melanoblast | 5.39e-12 | 10 |
pigment cell | 1.01e-08 | 14 |
neurectodermal cell | 4.29e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 2.68e-14 | 8 |
male reproductive organ | 1.46e-10 | 11 |
gonad | 1.42e-09 | 21 |
indifferent external genitalia | 1.42e-09 | 21 |
indifferent gonad | 1.42e-09 | 21 |
gonad primordium | 1.42e-09 | 21 |
external genitalia | 3.78e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.04e-19 | 22 |
germ cell cancer | 1.04e-19 | 22 |
chondrosarcoma | 1.25e-13 | 1 |
extraosseous chondrosarcoma | 1.25e-13 | 1 |
myxoid chondrosarcoma | 1.25e-13 | 1 |
extraskeletal myxoid chondrosarcoma | 1.25e-13 | 1 |