FFCP PHASE1:Hg19::chr14:22928041..22928068,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-20bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_1_at_uc001wea.3_5end,CAGE_peak_1_at_uc010ajt.2_5end,CAGE_peak_1_at_uc010aju.1_5end | |||
|id=chr14:22928041..22928068,+ | |||
|ontology_enrichment_celltype=CL:0000623!8.65e-11!3;CL:0000825!8.65e-11!3;CL:0000625!3.12e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0002127;2.78e-26;1!CL:0000911;2.78e-26;1!CL:0000814;2.78e-26;1!CL:0002253;1.29e-13;2!CL:0002563;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,2.78e-26,1;CL:0000914,2.78e-26,1;CL:0000911,2.78e-26,1;CL:0000814,2.78e-26,1;CL:0002042,2.78e-26,1;CL:0002039,2.78e-26,1;CL:0002040,2.78e-26,1;CL:0002041,2.78e-26,1;CL:0000893,7.30e-14,2;CL:0002489,7.30e-14,2;CL:0000809,7.30e-14,2;CL:0000808,7.30e-14,2;CL:0000894,7.30e-14,2;CL:0000806,7.30e-14,2;CL:0000807,7.30e-14,2;CL:0000805,7.30e-14,2;CL:0002425,7.30e-14,2;CL:0002253,1.21e-13,2;CL:0002563,1.80e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002425;7.30e-14;2!UBERON:0006965;9.40e-14;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.75e-12!7;UBERON:0002370!4.88e-09!4;UBERON:0005058!4.88e-09!4;UBERON:0009113!4.88e-09!4;UBERON:0003295!4.88e-09!4;UBERON:0005562!4.88e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.14e-50;2!UBERON:0005058;1.14e-50;2!UBERON:0009113;1.14e-50;2!UBERON:0004177;5.44e-21;5!UBERON:0005057;5.44e-21;5!UBERON:0000341;1.29e-13;2!UBERON:0001052;1.86e-07;4!UBERON:0001242;1.86e-07;4!UBERON:0001262;1.86e-07;4!UBERON:0004786;1.86e-07;4!UBERON:0004808;1.86e-07;4!UBERON:0001277;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.48e-56,4;UBERON:0005058,1.48e-56,4;UBERON:0009113,1.48e-56,4;UBERON:0003295,1.48e-56,4;UBERON:0005562,1.48e-56,4;UBERON:0000974,4.75e-40,10;UBERON:0003351,4.90e-38,6;UBERON:0004177,9.77e-33,7;UBERON:0005057,9.77e-33,7;UBERON:0003408,3.52e-23,10;UBERON:0001042,3.52e-23,10;UBERON:0009145,3.52e-23,10;UBERON:0006562,3.79e-21,11;UBERON:0009722,3.79e-21,11;UBERON:0007690,3.79e-21,11;UBERON:0000341,1.37e-13,2;UBERON:0008814,3.20e-13,18;UBERON:0001557,1.45e-12,19;UBERON:0004807,9.72e-09,28;UBERON:0000077,1.85e-08,29;UBERON:0003929,8.01e-08,54;UBERON:0001052,1.80e-07,4;UBERON:0001242,1.80e-07,4;UBERON:0001262,1.80e-07,4;UBERON:0004786,1.80e-07,4;UBERON:0004808,1.80e-07,4;UBERON:0001277,1.80e-07,4;UBERON:0002368,4.12e-07,35;UBERON:0000153,7.52e-07,62;UBERON:0007811,7.52e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0.786728553697808,0,0,0,0,0,0,0,0.293600439334847,0,0,0.434021741431704,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0.222820913770347,0,0,0.270803863765016,0.128091319725675,0.260118695119756,0.328875809207352,0,0.289803085735052,0.14828656316206,0.267540828089713,0,0.226618685395132,0,0,0.506039384039006,0.95569624297229,0,1.90090408889675,0.150575119077773,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.9774545186731,0.985153801009636,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,0.764637207142375,0,0,0.822724546172388,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0.766021480529467,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0,0,1.73110911793673,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487170393523584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0,0.235676547101626,0,0,0,0,0.0939839179798536,0.580120991762195,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1903221573187,38.6241680819316,20.8571040034083,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.244482888365733,0.406896178315738,0,2.81783311027437,0 | |||
|short_description=p1@uc001wea.3,p1@uc010ajt.2,p1@uc010aju.1 | |||
}} |
Revision as of 19:07, 11 January 2014
Short description: | p1@uc001wea.3, p1@uc010ajt.2, p1@uc010aju.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wea.3_5end, CAGE_peak_1_at_uc010ajt.2_5end, CAGE_peak_1_at_uc010aju.1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -20bp_to_uc001wea.3, uc010ajt.2, uc010aju.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 2.78e-26 | 1 |
immature NK T cell | 2.78e-26 | 1 |
effector T cell | 2.78e-26 | 1 |
mature NK T cell | 2.78e-26 | 1 |
immature NK T cell stage IV | 2.78e-26 | 1 |
immature NK T cell stage I | 2.78e-26 | 1 |
immature NK T cell stage II | 2.78e-26 | 1 |
immature NK T cell stage III | 2.78e-26 | 1 |
thymocyte | 7.30e-14 | 2 |
double negative thymocyte | 7.30e-14 | 2 |
double-positive, alpha-beta thymocyte | 7.30e-14 | 2 |
DN4 thymocyte | 7.30e-14 | 2 |
DN1 thymic pro-T cell | 7.30e-14 | 2 |
DN2 thymocyte | 7.30e-14 | 2 |
DN3 thymocyte | 7.30e-14 | 2 |
immature single positive thymocyte | 7.30e-14 | 2 |
early T lineage precursor | 7.30e-14 | 2 |
epithelial cell of large intestine | 1.21e-13 | 2 |
intestinal epithelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.48e-56 | 4 |
hemolymphoid system gland | 1.48e-56 | 4 |
thymic region | 1.48e-56 | 4 |
pharyngeal gland | 1.48e-56 | 4 |
thymus primordium | 1.48e-56 | 4 |
neck | 4.75e-40 | 10 |
pharyngeal epithelium | 4.90e-38 | 6 |
hemopoietic organ | 9.77e-33 | 7 |
immune organ | 9.77e-33 | 7 |
gland of gut | 3.52e-23 | 10 |
chordate pharynx | 3.52e-23 | 10 |
pharyngeal region of foregut | 3.52e-23 | 10 |
pharynx | 3.79e-21 | 11 |
entire pharyngeal arch endoderm | 3.79e-21 | 11 |
early pharyngeal endoderm | 3.79e-21 | 11 |
throat | 1.37e-13 | 2 |
pharyngeal arch system | 3.20e-13 | 18 |
upper respiratory tract | 1.45e-12 | 19 |
respiratory system epithelium | 9.72e-09 | 28 |
mixed endoderm/mesoderm-derived structure | 1.85e-08 | 29 |
gut epithelium | 8.01e-08 | 54 |
rectum | 1.80e-07 | 4 |
intestinal mucosa | 1.80e-07 | 4 |
wall of intestine | 1.80e-07 | 4 |
gastrointestinal system mucosa | 1.80e-07 | 4 |
gastrointestinal system epithelium | 1.80e-07 | 4 |
intestinal epithelium | 1.80e-07 | 4 |
endocrine gland | 4.12e-07 | 35 |
anterior region of body | 7.52e-07 | 62 |
craniocervical region | 7.52e-07 | 62 |